Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1152

Experiment: KB with capsaicin 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1151 and Psyr_1152 are separated by 145 nucleotidesPsyr_1152 and Psyr_1153 are separated by 63 nucleotides Psyr_1151: Psyr_1151 - cyclohexadienyl dehydratase, at 1,303,150 to 1,303,941 _1151 Psyr_1152: Psyr_1152 - transcriptional regulator, ArsR family, at 1,304,087 to 1,304,395 _1152 Psyr_1153: Psyr_1153 - Zinc-containing alcohol dehydrogenase superfamily, at 1,304,459 to 1,305,469 _1153 Position (kb) 1304 1305Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1303.098 kb on + strandat 1303.098 kb on + strandat 1303.098 kb on + strandat 1303.098 kb on + strandat 1303.098 kb on + strandat 1303.098 kb on + strandat 1303.098 kb on + strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.102 kb on + strandat 1303.102 kb on + strandat 1303.141 kb on + strandat 1303.142 kb on - strandat 1303.142 kb on - strandat 1303.238 kb on + strand, within Psyr_1151at 1303.238 kb on + strand, within Psyr_1151at 1303.238 kb on + strand, within Psyr_1151at 1303.238 kb on + strand, within Psyr_1151at 1303.238 kb on + strand, within Psyr_1151at 1303.238 kb on + strand, within Psyr_1151at 1303.238 kb on + strand, within Psyr_1151at 1303.239 kb on - strand, within Psyr_1151at 1303.239 kb on - strand, within Psyr_1151at 1303.239 kb on - strand, within Psyr_1151at 1303.239 kb on - strand, within Psyr_1151at 1303.274 kb on + strand, within Psyr_1151at 1303.275 kb on - strand, within Psyr_1151at 1303.275 kb on - strand, within Psyr_1151at 1303.299 kb on - strand, within Psyr_1151at 1303.346 kb on + strand, within Psyr_1151at 1303.346 kb on + strand, within Psyr_1151at 1303.347 kb on - strand, within Psyr_1151at 1303.536 kb on - strand, within Psyr_1151at 1303.536 kb on - strand, within Psyr_1151at 1303.770 kb on - strand, within Psyr_1151at 1303.805 kb on + strand, within Psyr_1151at 1303.805 kb on + strand, within Psyr_1151at 1303.868 kb on + strandat 1303.869 kb on - strandat 1303.869 kb on - strandat 1303.869 kb on - strandat 1303.925 kb on + strandat 1303.925 kb on + strandat 1303.926 kb on - strandat 1303.926 kb on - strandat 1303.929 kb on + strandat 1303.952 kb on - strandat 1304.022 kb on + strandat 1304.023 kb on - strandat 1304.053 kb on - strandat 1304.053 kb on - strandat 1304.053 kb on - strandat 1304.053 kb on - strandat 1304.053 kb on - strandat 1304.261 kb on - strand, within Psyr_1152at 1304.333 kb on + strand, within Psyr_1152at 1304.333 kb on + strand, within Psyr_1152at 1304.334 kb on - strand, within Psyr_1152at 1304.334 kb on - strand, within Psyr_1152at 1304.393 kb on + strandat 1304.394 kb on - strandat 1304.467 kb on + strandat 1304.467 kb on + strandat 1304.467 kb on + strandat 1304.467 kb on + strandat 1304.467 kb on + strandat 1304.467 kb on + strandat 1304.467 kb on + strandat 1304.467 kb on + strandat 1304.467 kb on + strandat 1304.467 kb on + strandat 1304.467 kb on + strandat 1304.468 kb on - strandat 1304.468 kb on - strandat 1304.468 kb on - strandat 1304.468 kb on - strandat 1304.468 kb on - strandat 1304.468 kb on - strandat 1304.468 kb on - strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.477 kb on + strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.478 kb on - strandat 1304.585 kb on + strand, within Psyr_1153at 1304.585 kb on + strand, within Psyr_1153at 1304.585 kb on + strand, within Psyr_1153at 1304.585 kb on + strand, within Psyr_1153at 1304.585 kb on + strand, within Psyr_1153at 1304.586 kb on - strand, within Psyr_1153at 1304.586 kb on - strand, within Psyr_1153at 1304.662 kb on - strand, within Psyr_1153at 1304.673 kb on + strand, within Psyr_1153at 1304.674 kb on - strand, within Psyr_1153at 1304.674 kb on - strand, within Psyr_1153at 1304.827 kb on + strand, within Psyr_1153at 1304.828 kb on - strand, within Psyr_1153at 1304.828 kb on - strand, within Psyr_1153at 1304.856 kb on - strand, within Psyr_1153at 1305.089 kb on + strand, within Psyr_1153at 1305.089 kb on + strand, within Psyr_1153

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
remove
1,303,098 + -1.8
1,303,098 + +0.0
1,303,098 + +0.3
1,303,098 + -0.2
1,303,098 + +1.0
1,303,098 + -2.5
1,303,098 + -1.8
1,303,099 - +1.0
1,303,099 - +0.6
1,303,099 - -1.3
1,303,099 - +0.6
1,303,099 - -0.5
1,303,099 - -0.0
1,303,099 - -0.6
1,303,099 - -0.3
1,303,099 - -0.4
1,303,099 - +1.0
1,303,099 - -0.8
1,303,099 - -0.5
1,303,099 - +1.0
1,303,099 - +0.7
1,303,099 - -1.6
1,303,099 - -1.0
1,303,099 - +1.4
1,303,102 + -1.6
1,303,102 + +1.0
1,303,141 + -2.1
1,303,142 - -0.7
1,303,142 - +2.6
1,303,238 + Psyr_1151 0.11 -0.4
1,303,238 + Psyr_1151 0.11 +0.6
1,303,238 + Psyr_1151 0.11 +0.6
1,303,238 + Psyr_1151 0.11 -0.7
1,303,238 + Psyr_1151 0.11 -0.1
1,303,238 + Psyr_1151 0.11 +0.0
1,303,238 + Psyr_1151 0.11 -1.0
1,303,239 - Psyr_1151 0.11 +1.2
1,303,239 - Psyr_1151 0.11 +0.8
1,303,239 - Psyr_1151 0.11 +0.9
1,303,239 - Psyr_1151 0.11 -1.6
1,303,274 + Psyr_1151 0.16 +1.1
1,303,275 - Psyr_1151 0.16 -1.0
1,303,275 - Psyr_1151 0.16 +0.5
1,303,299 - Psyr_1151 0.19 +0.6
1,303,346 + Psyr_1151 0.25 -0.0
1,303,346 + Psyr_1151 0.25 +0.8
1,303,347 - Psyr_1151 0.25 +1.8
1,303,536 - Psyr_1151 0.49 -0.9
1,303,536 - Psyr_1151 0.49 -0.1
1,303,770 - Psyr_1151 0.78 +1.5
1,303,805 + Psyr_1151 0.83 +1.0
1,303,805 + Psyr_1151 0.83 +0.4
1,303,868 + +0.0
1,303,869 - +0.7
1,303,869 - -0.5
1,303,869 - +1.9
1,303,925 + -1.0
1,303,925 + +1.0
1,303,926 - +0.7
1,303,926 - -0.3
1,303,929 + -0.8
1,303,952 - +0.0
1,304,022 + +0.2
1,304,023 - -0.3
1,304,053 - +0.3
1,304,053 - -0.1
1,304,053 - -0.7
1,304,053 - -1.1
1,304,053 - -1.0
1,304,261 - Psyr_1152 0.56 -2.8
1,304,333 + Psyr_1152 0.80 +0.1
1,304,333 + Psyr_1152 0.80 -0.2
1,304,334 - Psyr_1152 0.80 -1.3
1,304,334 - Psyr_1152 0.80 -2.1
1,304,393 + -0.6
1,304,394 - +1.7
1,304,467 + +0.4
1,304,467 + +0.2
1,304,467 + -0.2
1,304,467 + -1.7
1,304,467 + +0.0
1,304,467 + +0.1
1,304,467 + -0.4
1,304,467 + +0.8
1,304,467 + +0.5
1,304,467 + +0.7
1,304,467 + -0.1
1,304,468 - -0.1
1,304,468 - +0.5
1,304,468 - +0.6
1,304,468 - -0.5
1,304,468 - -0.1
1,304,468 - -0.6
1,304,468 - +0.3
1,304,477 + -0.1
1,304,477 + -0.1
1,304,477 + +1.0
1,304,477 + -0.3
1,304,477 + -0.2
1,304,477 + +0.5
1,304,477 + +0.8
1,304,477 + -1.0
1,304,477 + +1.9
1,304,477 + +0.2
1,304,477 + +1.4
1,304,477 + -0.1
1,304,477 + -0.0
1,304,477 + +0.3
1,304,477 + -1.9
1,304,477 + +0.0
1,304,477 + -1.7
1,304,477 + +0.7
1,304,477 + -0.2
1,304,477 + +2.0
1,304,477 + +0.6
1,304,477 + +0.8
1,304,478 - +0.0
1,304,478 - -0.3
1,304,478 - -0.0
1,304,478 - -1.3
1,304,478 - +0.3
1,304,478 - -0.5
1,304,478 - +1.9
1,304,478 - -0.2
1,304,478 - +1.0
1,304,478 - -0.7
1,304,478 - -0.2
1,304,478 - -0.5
1,304,478 - +0.5
1,304,478 - -0.0
1,304,478 - -0.8
1,304,478 - -0.8
1,304,478 - -0.5
1,304,478 - +2.0
1,304,478 - +0.4
1,304,478 - -2.7
1,304,478 - -1.8
1,304,478 - +1.0
1,304,478 - -1.0
1,304,478 - +0.0
1,304,478 - -1.3
1,304,478 - -0.5
1,304,585 + Psyr_1153 0.12 -0.4
1,304,585 + Psyr_1153 0.12 -0.6
1,304,585 + Psyr_1153 0.12 +0.1
1,304,585 + Psyr_1153 0.12 -0.9
1,304,585 + Psyr_1153 0.12 +0.4
1,304,586 - Psyr_1153 0.13 -1.3
1,304,586 - Psyr_1153 0.13 +0.5
1,304,662 - Psyr_1153 0.20 -0.7
1,304,673 + Psyr_1153 0.21 -0.5
1,304,674 - Psyr_1153 0.21 -0.7
1,304,674 - Psyr_1153 0.21 +0.8
1,304,827 + Psyr_1153 0.36 -0.1
1,304,828 - Psyr_1153 0.36 -0.2
1,304,828 - Psyr_1153 0.36 +0.6
1,304,856 - Psyr_1153 0.39 -0.2
1,305,089 + Psyr_1153 0.62 +0.8
1,305,089 + Psyr_1153 0.62 +1.0

Or see this region's nucleotide sequence