Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1107

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
1,253,227	-				-1.2
1,253,287	-		Psyr_1106	0.16	-0.2
1,253,310	-		Psyr_1106	0.18	-0.2
1,253,310	-		Psyr_1106	0.18	+0.3
1,253,336	+		Psyr_1106	0.21	+1.1
1,253,336	+		Psyr_1106	0.21	-0.7
1,253,495	+		Psyr_1106	0.38	-0.2
1,253,496	-		Psyr_1106	0.38	+1.3
1,253,496	-		Psyr_1106	0.38	-0.3
1,253,496	-		Psyr_1106	0.38	-0.8
1,253,625	+		Psyr_1106	0.51	-0.5
1,253,625	+		Psyr_1106	0.51	+0.4
1,253,626	-		Psyr_1106	0.51	+0.1
1,253,626	-		Psyr_1106	0.51	-0.8
1,253,626	-		Psyr_1106	0.51	+0.7
1,254,124	+				+0.2
1,254,131	-				-0.8
1,254,188	-				-0.3
1,254,188	-				-1.5
1,254,188	-				+0.1
1,254,188	-				-0.2
1,254,223	+		Psyr_1107	0.12	+1.1
1,254,223	+		Psyr_1107	0.12	+0.6
1,254,223	+		Psyr_1107	0.12	+0.1
1,254,224	-		Psyr_1107	0.12	-1.0
1,254,266	+		Psyr_1107	0.19	+0.1
1,254,267	-		Psyr_1107	0.20	-1.4
1,254,267	-		Psyr_1107	0.20	+0.6
1,254,267	-		Psyr_1107	0.20	-0.0
1,254,618	+		Psyr_1107	0.82	-0.1
1,254,618	+		Psyr_1107	0.82	-1.6
1,254,618	+		Psyr_1107	0.82	-0.9
1,254,618	+		Psyr_1107	0.82	-2.8
1,254,619	-		Psyr_1107	0.82	-0.4
1,254,619	-		Psyr_1107	0.82	+0.5
1,254,622	+		Psyr_1107	0.82	-0.3
1,254,622	+		Psyr_1107	0.82	-0.4
1,254,622	+		Psyr_1107	0.82	+0.4
1,254,622	+		Psyr_1107	0.82	-0.4
1,254,622	+		Psyr_1107	0.82	-1.3
1,254,622	+		Psyr_1107	0.82	-0.6
1,254,623	-		Psyr_1107	0.83	-0.9
1,254,623	-		Psyr_1107	0.83	-0.4
1,254,623	-		Psyr_1107	0.83	-1.6
1,254,749	-				-0.8
1,254,752	+				-2.3
1,254,752	+				+0.5
1,254,752	+				-0.5
1,254,752	+				-0.5
1,254,752	+				-2.0
1,254,753	-				+0.8
1,254,753	-				-0.6
1,254,753	-				+2.1
1,254,753	-				-0.0
1,254,753	-				+0.7
1,254,859	+				+0.4
1,254,936	+				+1.1
1,254,937	-				-1.6
1,254,937	-				-0.9
1,254,937	-				-0.4
1,254,937	-				-0.1
1,254,937	-				-0.8
1,255,037	-		Psyr_1108	0.18	-0.4
1,255,197	+		Psyr_1108	0.34	-1.9
1,255,282	+		Psyr_1108	0.42	-1.3
1,255,282	+		Psyr_1108	0.42	+1.2
1,255,283	-		Psyr_1108	0.42	-0.8
1,255,312	+		Psyr_1108	0.45	+0.1
1,255,313	-		Psyr_1108	0.45	-1.7
1,255,313	-		Psyr_1108	0.45	-3.5
1,255,313	-		Psyr_1108	0.45	+1.2
1,255,365	+		Psyr_1108	0.51	-1.1
1,255,365	+		Psyr_1108	0.51	-0.7
1,255,365	+		Psyr_1108	0.51	-1.6
1,255,366	-		Psyr_1108	0.51	-0.8
1,255,366	-		Psyr_1108	0.51	+3.1
1,255,366	-		Psyr_1108	0.51	-0.9
1,255,366	-		Psyr_1108	0.51	-0.6
1,255,456	+		Psyr_1108	0.60	-0.5
1,255,457	-		Psyr_1108	0.60	-1.7
1,255,457	-		Psyr_1108	0.60	-0.9
1,255,457	-		Psyr_1108	0.60	-1.9
1,255,457	-		Psyr_1108	0.60	-0.8
1,255,496	+		Psyr_1108	0.64	-0.5
1,255,497	-		Psyr_1108	0.64	-2.1
1,255,581	+		Psyr_1108	0.72	+2.1
1,255,581	+		Psyr_1108	0.72	-2.1
1,255,581	+		Psyr_1108	0.72	-0.5
1,255,582	-		Psyr_1108	0.72	-0.9
1,255,582	-		Psyr_1108	0.72	-0.4
1,255,582	-		Psyr_1108	0.72	-0.0
1,255,582	-		Psyr_1108	0.72	-0.1
1,255,582	-		Psyr_1108	0.72	-1.3
1,255,582	-		Psyr_1108	0.72	-1.1
1,255,582	-		Psyr_1108	0.72	-0.4
1,255,582	-		Psyr_1108	0.72	-2.6
1,255,637	+		Psyr_1108	0.78	+0.2
1,255,637	+		Psyr_1108	0.78	-1.0
1,255,638	-		Psyr_1108	0.78	-1.8
1,255,701	+		Psyr_1108	0.84	-2.6
1,255,702	-		Psyr_1108	0.84	-0.7
1,255,702	-		Psyr_1108	0.84	-1.4
1,255,702	-		Psyr_1108	0.84	+0.6
1,255,702	-		Psyr_1108	0.84	-0.5