Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1101

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1100 and Psyr_1101 are separated by 170 nucleotidesPsyr_1101 and Psyr_1102 are separated by 695 nucleotides Psyr_1100: Psyr_1100 - PAS/PAC sensor signal transduction histidine kinase, at 1,244,685 to 1,246,415 _1100 Psyr_1101: Psyr_1101 - Helix-turn-helix, Fis-type, at 1,246,586 to 1,248,094 _1101 Psyr_1102: Psyr_1102 - conserved hypothetical protein, at 1,248,790 to 1,249,146 _1102 Position (kb) 1246 1247 1248 1249Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1245.607 kb on + strand, within Psyr_1100at 1245.607 kb on + strand, within Psyr_1100at 1245.608 kb on - strand, within Psyr_1100at 1245.608 kb on - strand, within Psyr_1100at 1245.608 kb on - strand, within Psyr_1100at 1245.634 kb on + strand, within Psyr_1100at 1245.635 kb on - strand, within Psyr_1100at 1245.865 kb on + strand, within Psyr_1100at 1245.865 kb on + strand, within Psyr_1100at 1245.865 kb on + strand, within Psyr_1100at 1245.865 kb on + strand, within Psyr_1100at 1245.865 kb on + strand, within Psyr_1100at 1245.865 kb on + strand, within Psyr_1100at 1245.865 kb on + strand, within Psyr_1100at 1245.866 kb on - strand, within Psyr_1100at 1245.866 kb on - strand, within Psyr_1100at 1245.866 kb on - strand, within Psyr_1100at 1245.866 kb on - strand, within Psyr_1100at 1245.866 kb on - strand, within Psyr_1100at 1246.036 kb on + strand, within Psyr_1100at 1246.036 kb on + strand, within Psyr_1100at 1246.036 kb on + strand, within Psyr_1100at 1246.036 kb on + strand, within Psyr_1100at 1246.036 kb on + strand, within Psyr_1100at 1246.036 kb on + strand, within Psyr_1100at 1246.036 kb on + strand, within Psyr_1100at 1246.037 kb on - strand, within Psyr_1100at 1246.048 kb on + strand, within Psyr_1100at 1246.048 kb on + strand, within Psyr_1100at 1246.048 kb on + strand, within Psyr_1100at 1246.049 kb on - strand, within Psyr_1100at 1246.049 kb on - strand, within Psyr_1100at 1246.080 kb on + strand, within Psyr_1100at 1246.081 kb on - strand, within Psyr_1100at 1246.243 kb on - strandat 1246.285 kb on + strandat 1246.285 kb on + strandat 1246.286 kb on - strandat 1246.286 kb on - strandat 1246.415 kb on + strandat 1246.431 kb on + strandat 1246.431 kb on + strandat 1246.431 kb on + strandat 1246.432 kb on - strandat 1246.467 kb on + strandat 1246.492 kb on + strandat 1246.492 kb on + strandat 1246.492 kb on + strandat 1246.493 kb on - strandat 1246.493 kb on - strandat 1246.493 kb on - strandat 1246.493 kb on - strandat 1246.532 kb on + strandat 1246.532 kb on + strandat 1246.533 kb on - strandat 1246.537 kb on - strandat 1246.540 kb on - strandat 1246.540 kb on - strandat 1246.561 kb on - strandat 1246.561 kb on - strandat 1246.587 kb on + strandat 1246.608 kb on + strandat 1246.645 kb on + strandat 1246.645 kb on + strandat 1246.646 kb on - strandat 1246.646 kb on - strandat 1246.646 kb on - strandat 1246.646 kb on - strandat 1246.646 kb on - strandat 1246.799 kb on + strand, within Psyr_1101at 1246.799 kb on + strand, within Psyr_1101at 1246.799 kb on + strand, within Psyr_1101at 1246.799 kb on + strand, within Psyr_1101at 1246.800 kb on - strand, within Psyr_1101at 1246.800 kb on - strand, within Psyr_1101at 1246.800 kb on - strand, within Psyr_1101at 1246.800 kb on - strand, within Psyr_1101at 1246.800 kb on - strand, within Psyr_1101at 1246.800 kb on - strand, within Psyr_1101at 1246.800 kb on - strand, within Psyr_1101at 1246.800 kb on - strand, within Psyr_1101at 1246.801 kb on + strand, within Psyr_1101at 1246.801 kb on + strand, within Psyr_1101at 1246.853 kb on + strand, within Psyr_1101at 1246.854 kb on - strand, within Psyr_1101at 1246.854 kb on - strand, within Psyr_1101at 1246.854 kb on - strand, within Psyr_1101at 1246.900 kb on - strand, within Psyr_1101at 1246.900 kb on - strand, within Psyr_1101at 1247.123 kb on + strand, within Psyr_1101at 1247.193 kb on + strand, within Psyr_1101at 1247.194 kb on - strand, within Psyr_1101at 1247.225 kb on + strand, within Psyr_1101at 1247.225 kb on + strand, within Psyr_1101at 1247.225 kb on + strand, within Psyr_1101at 1247.225 kb on + strand, within Psyr_1101at 1247.225 kb on + strand, within Psyr_1101at 1247.226 kb on - strand, within Psyr_1101at 1247.226 kb on - strand, within Psyr_1101at 1247.226 kb on - strand, within Psyr_1101at 1247.226 kb on - strand, within Psyr_1101at 1247.593 kb on + strandat 1247.979 kb on + strandat 1247.979 kb on + strandat 1247.979 kb on + strandat 1247.979 kb on + strandat 1247.980 kb on - strandat 1248.131 kb on + strandat 1248.131 kb on + strandat 1248.131 kb on + strandat 1248.131 kb on + strandat 1248.131 kb on + strandat 1248.131 kb on + strandat 1248.131 kb on + strandat 1248.132 kb on - strandat 1248.132 kb on - strandat 1248.132 kb on - strandat 1248.132 kb on - strandat 1248.132 kb on - strandat 1248.132 kb on - strandat 1248.132 kb on - strandat 1248.132 kb on - strandat 1248.213 kb on - strandat 1248.213 kb on - strandat 1248.213 kb on - strandat 1248.213 kb on - strandat 1248.213 kb on - strandat 1248.268 kb on - strandat 1248.268 kb on - strandat 1248.268 kb on - strandat 1248.458 kb on - strandat 1248.458 kb on - strandat 1248.458 kb on - strandat 1248.561 kb on - strandat 1248.648 kb on - strandat 1248.750 kb on + strandat 1248.751 kb on - strandat 1248.751 kb on - strandat 1248.791 kb on + strandat 1249.067 kb on + strand, within Psyr_1102at 1249.085 kb on + strand, within Psyr_1102at 1249.085 kb on + strand, within Psyr_1102at 1249.085 kb on + strand, within Psyr_1102at 1249.085 kb on + strand, within Psyr_1102at 1249.085 kb on + strand, within Psyr_1102at 1249.085 kb on + strand, within Psyr_1102at 1249.085 kb on + strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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1,245,607 + Psyr_1100 0.53 -2.4
1,245,607 + Psyr_1100 0.53 +0.2
1,245,608 - Psyr_1100 0.53 -0.4
1,245,608 - Psyr_1100 0.53 -0.8
1,245,608 - Psyr_1100 0.53 +1.5
1,245,634 + Psyr_1100 0.55 -0.1
1,245,635 - Psyr_1100 0.55 -0.4
1,245,865 + Psyr_1100 0.68 +0.1
1,245,865 + Psyr_1100 0.68 -0.2
1,245,865 + Psyr_1100 0.68 +1.1
1,245,865 + Psyr_1100 0.68 +0.2
1,245,865 + Psyr_1100 0.68 +1.1
1,245,865 + Psyr_1100 0.68 -2.9
1,245,865 + Psyr_1100 0.68 -0.1
1,245,866 - Psyr_1100 0.68 +0.7
1,245,866 - Psyr_1100 0.68 +0.5
1,245,866 - Psyr_1100 0.68 -2.6
1,245,866 - Psyr_1100 0.68 +1.8
1,245,866 - Psyr_1100 0.68 -1.3
1,246,036 + Psyr_1100 0.78 +1.4
1,246,036 + Psyr_1100 0.78 -1.4
1,246,036 + Psyr_1100 0.78 -1.6
1,246,036 + Psyr_1100 0.78 -1.1
1,246,036 + Psyr_1100 0.78 -0.3
1,246,036 + Psyr_1100 0.78 +0.5
1,246,036 + Psyr_1100 0.78 -0.4
1,246,037 - Psyr_1100 0.78 +1.0
1,246,048 + Psyr_1100 0.79 +0.9
1,246,048 + Psyr_1100 0.79 -0.4
1,246,048 + Psyr_1100 0.79 +0.1
1,246,049 - Psyr_1100 0.79 +0.5
1,246,049 - Psyr_1100 0.79 +0.4
1,246,080 + Psyr_1100 0.81 +0.2
1,246,081 - Psyr_1100 0.81 -1.0
1,246,243 - +0.2
1,246,285 + -0.3
1,246,285 + -0.1
1,246,286 - +3.1
1,246,286 - +0.3
1,246,415 + -0.7
1,246,431 + -1.8
1,246,431 + -0.5
1,246,431 + +2.1
1,246,432 - +0.2
1,246,467 + -0.3
1,246,492 + -0.2
1,246,492 + -1.3
1,246,492 + -0.9
1,246,493 - -0.5
1,246,493 - -0.4
1,246,493 - +1.1
1,246,493 - -1.2
1,246,532 + +0.3
1,246,532 + +0.9
1,246,533 - -0.5
1,246,537 - -0.2
1,246,540 - -0.0
1,246,540 - -1.1
1,246,561 - +1.5
1,246,561 - -0.0
1,246,587 + -1.3
1,246,608 + +0.2
1,246,645 + +0.1
1,246,645 + -0.3
1,246,646 - -1.2
1,246,646 - -0.2
1,246,646 - -0.6
1,246,646 - -0.6
1,246,646 - -2.9
1,246,799 + Psyr_1101 0.14 -0.7
1,246,799 + Psyr_1101 0.14 +0.1
1,246,799 + Psyr_1101 0.14 -1.9
1,246,799 + Psyr_1101 0.14 -0.7
1,246,800 - Psyr_1101 0.14 +0.7
1,246,800 - Psyr_1101 0.14 +0.5
1,246,800 - Psyr_1101 0.14 +0.4
1,246,800 - Psyr_1101 0.14 -0.3
1,246,800 - Psyr_1101 0.14 +0.4
1,246,800 - Psyr_1101 0.14 +0.6
1,246,800 - Psyr_1101 0.14 -0.5
1,246,800 - Psyr_1101 0.14 -0.5
1,246,801 + Psyr_1101 0.14 +0.2
1,246,801 + Psyr_1101 0.14 +0.5
1,246,853 + Psyr_1101 0.18 -0.4
1,246,854 - Psyr_1101 0.18 -0.9
1,246,854 - Psyr_1101 0.18 +0.6
1,246,854 - Psyr_1101 0.18 -1.6
1,246,900 - Psyr_1101 0.21 +0.1
1,246,900 - Psyr_1101 0.21 +0.1
1,247,123 + Psyr_1101 0.36 -0.8
1,247,193 + Psyr_1101 0.40 +0.3
1,247,194 - Psyr_1101 0.40 +0.2
1,247,225 + Psyr_1101 0.42 -0.4
1,247,225 + Psyr_1101 0.42 +1.0
1,247,225 + Psyr_1101 0.42 +1.3
1,247,225 + Psyr_1101 0.42 -1.1
1,247,225 + Psyr_1101 0.42 +3.1
1,247,226 - Psyr_1101 0.42 -0.9
1,247,226 - Psyr_1101 0.42 +0.1
1,247,226 - Psyr_1101 0.42 +1.6
1,247,226 - Psyr_1101 0.42 +0.1
1,247,593 + +0.5
1,247,979 + -0.5
1,247,979 + +0.7
1,247,979 + -0.8
1,247,979 + -0.7
1,247,980 - +1.7
1,248,131 + +0.7
1,248,131 + -0.2
1,248,131 + -1.5
1,248,131 + -0.2
1,248,131 + +1.3
1,248,131 + +0.1
1,248,131 + -0.3
1,248,132 - -2.4
1,248,132 - -0.9
1,248,132 - -1.8
1,248,132 - +1.2
1,248,132 - +1.3
1,248,132 - +1.1
1,248,132 - -1.8
1,248,132 - -1.6
1,248,213 - -1.5
1,248,213 - +0.2
1,248,213 - -0.5
1,248,213 - +0.1
1,248,213 - +0.4
1,248,268 - +0.4
1,248,268 - -0.6
1,248,268 - +0.3
1,248,458 - -0.7
1,248,458 - -0.9
1,248,458 - +1.4
1,248,561 - +1.1
1,248,648 - -0.3
1,248,750 + -0.8
1,248,751 - +0.2
1,248,751 - -0.5
1,248,791 + -0.3
1,249,067 + Psyr_1102 0.78 -0.6
1,249,085 + Psyr_1102 0.83 +0.5
1,249,085 + Psyr_1102 0.83 -0.9
1,249,085 + Psyr_1102 0.83 -0.4
1,249,085 + Psyr_1102 0.83 -1.3
1,249,085 + Psyr_1102 0.83 +0.8
1,249,085 + Psyr_1102 0.83 -1.1
1,249,085 + Psyr_1102 0.83 +0.4
1,249,086 - Psyr_1102 0.83 -0.8
1,249,086 - Psyr_1102 0.83 +0.1
1,249,086 - Psyr_1102 0.83 -0.6
1,249,086 - Psyr_1102 0.83 -0.1
1,249,086 - Psyr_1102 0.83 -0.2
1,249,086 - Psyr_1102 0.83 -0.5
1,249,086 - Psyr_1102 0.83 -2.6
1,249,086 - Psyr_1102 0.83 -0.4

Or see this region's nucleotide sequence