Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1045

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1044 and Psyr_1045 are separated by 132 nucleotidesPsyr_1045 and Psyr_1046 overlap by 4 nucleotides Psyr_1044: Psyr_1044 - transcriptional regulator, LysR family, at 1,179,211 to 1,180,209 _1044 Psyr_1045: Psyr_1045 - RND efflux system, outer membrane lipoprotein, NodT, at 1,180,342 to 1,181,826 _1045 Psyr_1046: Psyr_1046 - Fusaric acid resistance protein conserved region, at 1,181,823 to 1,184,012 _1046 Position (kb) 1180 1181 1182Strain fitness (log2 ratio) -2 -1 0 1 2at 1179.347 kb on + strand, within Psyr_1044at 1179.347 kb on + strand, within Psyr_1044at 1179.348 kb on - strand, within Psyr_1044at 1179.426 kb on - strand, within Psyr_1044at 1179.645 kb on - strand, within Psyr_1044at 1179.671 kb on + strand, within Psyr_1044at 1179.671 kb on + strand, within Psyr_1044at 1179.671 kb on + strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.675 kb on + strand, within Psyr_1044at 1179.676 kb on - strand, within Psyr_1044at 1179.743 kb on + strand, within Psyr_1044at 1179.743 kb on + strand, within Psyr_1044at 1179.743 kb on + strand, within Psyr_1044at 1179.744 kb on - strand, within Psyr_1044at 1179.842 kb on + strand, within Psyr_1044at 1179.842 kb on + strand, within Psyr_1044at 1179.842 kb on + strand, within Psyr_1044at 1179.842 kb on + strand, within Psyr_1044at 1179.842 kb on + strand, within Psyr_1044at 1179.842 kb on + strand, within Psyr_1044at 1179.843 kb on - strand, within Psyr_1044at 1179.843 kb on - strand, within Psyr_1044at 1179.843 kb on - strand, within Psyr_1044at 1179.843 kb on - strand, within Psyr_1044at 1179.843 kb on - strand, within Psyr_1044at 1179.843 kb on - strand, within Psyr_1044at 1179.843 kb on - strand, within Psyr_1044at 1179.965 kb on + strand, within Psyr_1044at 1180.028 kb on - strand, within Psyr_1044at 1180.028 kb on - strand, within Psyr_1044at 1180.028 kb on - strand, within Psyr_1044at 1180.162 kb on + strandat 1180.162 kb on + strandat 1180.162 kb on + strandat 1180.163 kb on - strandat 1180.163 kb on - strandat 1180.174 kb on + strandat 1180.174 kb on + strandat 1180.174 kb on + strandat 1180.174 kb on + strandat 1180.174 kb on + strandat 1180.174 kb on + strandat 1180.175 kb on - strandat 1180.175 kb on - strandat 1180.175 kb on - strandat 1180.175 kb on - strandat 1180.175 kb on - strandat 1180.175 kb on - strandat 1180.175 kb on - strandat 1180.175 kb on - strandat 1180.175 kb on - strandat 1180.175 kb on - strandat 1180.175 kb on - strandat 1180.175 kb on - strandat 1180.211 kb on + strandat 1180.292 kb on - strandat 1180.359 kb on - strandat 1180.392 kb on + strandat 1180.392 kb on + strandat 1180.393 kb on - strandat 1180.721 kb on - strand, within Psyr_1045at 1180.721 kb on - strand, within Psyr_1045at 1180.721 kb on - strand, within Psyr_1045at 1180.743 kb on + strand, within Psyr_1045at 1180.906 kb on + strand, within Psyr_1045at 1180.906 kb on + strand, within Psyr_1045at 1180.906 kb on + strand, within Psyr_1045at 1180.907 kb on - strand, within Psyr_1045at 1180.907 kb on - strand, within Psyr_1045at 1180.907 kb on - strand, within Psyr_1045at 1180.976 kb on + strand, within Psyr_1045at 1180.976 kb on + strand, within Psyr_1045at 1180.976 kb on + strand, within Psyr_1045at 1180.976 kb on + strand, within Psyr_1045at 1181.338 kb on + strand, within Psyr_1045at 1181.338 kb on + strand, within Psyr_1045at 1181.338 kb on + strand, within Psyr_1045at 1181.338 kb on + strand, within Psyr_1045at 1181.338 kb on + strand, within Psyr_1045at 1181.338 kb on + strand, within Psyr_1045at 1181.338 kb on + strand, within Psyr_1045at 1181.339 kb on - strand, within Psyr_1045at 1181.339 kb on - strand, within Psyr_1045at 1181.339 kb on - strand, within Psyr_1045at 1181.339 kb on - strand, within Psyr_1045at 1181.339 kb on - strand, within Psyr_1045at 1181.339 kb on - strand, within Psyr_1045at 1181.339 kb on - strand, within Psyr_1045at 1181.339 kb on - strand, within Psyr_1045at 1181.339 kb on - strand, within Psyr_1045at 1181.339 kb on - strand, within Psyr_1045at 1181.393 kb on - strand, within Psyr_1045at 1181.473 kb on + strand, within Psyr_1045at 1181.473 kb on + strand, within Psyr_1045at 1181.473 kb on + strand, within Psyr_1045at 1181.474 kb on - strand, within Psyr_1045at 1181.494 kb on + strand, within Psyr_1045at 1181.494 kb on + strand, within Psyr_1045at 1181.494 kb on + strand, within Psyr_1045at 1181.495 kb on - strand, within Psyr_1045at 1181.611 kb on + strand, within Psyr_1045at 1181.611 kb on + strand, within Psyr_1045at 1181.910 kb on + strandat 1181.911 kb on - strandat 1181.911 kb on - strandat 1181.911 kb on - strandat 1181.946 kb on + strandat 1181.946 kb on + strandat 1181.947 kb on - strandat 1182.387 kb on + strand, within Psyr_1046at 1182.388 kb on - strand, within Psyr_1046at 1182.472 kb on + strand, within Psyr_1046at 1182.472 kb on + strand, within Psyr_1046at 1182.472 kb on + strand, within Psyr_1046at 1182.472 kb on + strand, within Psyr_1046at 1182.473 kb on - strand, within Psyr_1046at 1182.473 kb on - strand, within Psyr_1046at 1182.473 kb on - strand, within Psyr_1046at 1182.524 kb on - strand, within Psyr_1046at 1182.772 kb on - strand, within Psyr_1046

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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1,179,347 + Psyr_1044 0.14 -0.5
1,179,347 + Psyr_1044 0.14 +0.6
1,179,348 - Psyr_1044 0.14 -0.4
1,179,426 - Psyr_1044 0.22 -2.5
1,179,645 - Psyr_1044 0.43 -0.3
1,179,671 + Psyr_1044 0.46 -0.3
1,179,671 + Psyr_1044 0.46 +0.3
1,179,671 + Psyr_1044 0.46 +0.1
1,179,672 - Psyr_1044 0.46 -0.7
1,179,672 - Psyr_1044 0.46 +0.2
1,179,672 - Psyr_1044 0.46 -1.5
1,179,672 - Psyr_1044 0.46 -0.2
1,179,672 - Psyr_1044 0.46 -2.4
1,179,672 - Psyr_1044 0.46 +2.4
1,179,672 - Psyr_1044 0.46 -0.3
1,179,672 - Psyr_1044 0.46 -0.2
1,179,675 + Psyr_1044 0.46 -0.1
1,179,676 - Psyr_1044 0.47 +0.2
1,179,743 + Psyr_1044 0.53 -0.4
1,179,743 + Psyr_1044 0.53 -0.5
1,179,743 + Psyr_1044 0.53 +0.5
1,179,744 - Psyr_1044 0.53 -0.3
1,179,842 + Psyr_1044 0.63 +0.4
1,179,842 + Psyr_1044 0.63 +1.0
1,179,842 + Psyr_1044 0.63 -0.0
1,179,842 + Psyr_1044 0.63 +2.3
1,179,842 + Psyr_1044 0.63 +0.5
1,179,842 + Psyr_1044 0.63 +1.6
1,179,843 - Psyr_1044 0.63 -1.1
1,179,843 - Psyr_1044 0.63 -0.7
1,179,843 - Psyr_1044 0.63 +1.4
1,179,843 - Psyr_1044 0.63 -0.2
1,179,843 - Psyr_1044 0.63 +2.0
1,179,843 - Psyr_1044 0.63 -0.1
1,179,843 - Psyr_1044 0.63 -0.3
1,179,965 + Psyr_1044 0.75 +0.3
1,180,028 - Psyr_1044 0.82 -0.5
1,180,028 - Psyr_1044 0.82 -0.4
1,180,028 - Psyr_1044 0.82 -0.2
1,180,162 + +0.2
1,180,162 + +0.7
1,180,162 + +0.0
1,180,163 - +0.6
1,180,163 - +1.0
1,180,174 + -0.4
1,180,174 + -0.2
1,180,174 + +0.2
1,180,174 + +1.0
1,180,174 + +1.6
1,180,174 + +0.9
1,180,175 - +0.7
1,180,175 - +2.0
1,180,175 - +0.8
1,180,175 - -0.2
1,180,175 - +0.3
1,180,175 - +1.6
1,180,175 - +1.0
1,180,175 - +0.1
1,180,175 - +0.7
1,180,175 - -0.5
1,180,175 - -0.8
1,180,175 - -0.5
1,180,211 + +0.7
1,180,292 - -2.7
1,180,359 - +0.6
1,180,392 + -0.0
1,180,392 + -0.3
1,180,393 - +0.4
1,180,721 - Psyr_1045 0.26 -0.2
1,180,721 - Psyr_1045 0.26 -2.4
1,180,721 - Psyr_1045 0.26 +0.4
1,180,743 + Psyr_1045 0.27 -2.2
1,180,906 + Psyr_1045 0.38 -1.3
1,180,906 + Psyr_1045 0.38 -0.4
1,180,906 + Psyr_1045 0.38 -0.8
1,180,907 - Psyr_1045 0.38 +0.1
1,180,907 - Psyr_1045 0.38 +1.1
1,180,907 - Psyr_1045 0.38 -1.5
1,180,976 + Psyr_1045 0.43 -0.2
1,180,976 + Psyr_1045 0.43 -0.6
1,180,976 + Psyr_1045 0.43 -0.1
1,180,976 + Psyr_1045 0.43 -0.9
1,181,338 + Psyr_1045 0.67 -0.9
1,181,338 + Psyr_1045 0.67 -0.5
1,181,338 + Psyr_1045 0.67 -0.3
1,181,338 + Psyr_1045 0.67 +0.2
1,181,338 + Psyr_1045 0.67 -1.1
1,181,338 + Psyr_1045 0.67 -2.1
1,181,338 + Psyr_1045 0.67 +0.4
1,181,339 - Psyr_1045 0.67 +1.1
1,181,339 - Psyr_1045 0.67 +0.7
1,181,339 - Psyr_1045 0.67 -0.5
1,181,339 - Psyr_1045 0.67 +0.4
1,181,339 - Psyr_1045 0.67 -0.2
1,181,339 - Psyr_1045 0.67 -1.9
1,181,339 - Psyr_1045 0.67 +0.1
1,181,339 - Psyr_1045 0.67 -0.9
1,181,339 - Psyr_1045 0.67 -0.5
1,181,339 - Psyr_1045 0.67 +0.5
1,181,393 - Psyr_1045 0.71 -0.7
1,181,473 + Psyr_1045 0.76 +0.2
1,181,473 + Psyr_1045 0.76 +0.8
1,181,473 + Psyr_1045 0.76 -0.8
1,181,474 - Psyr_1045 0.76 -0.4
1,181,494 + Psyr_1045 0.78 -0.2
1,181,494 + Psyr_1045 0.78 -0.4
1,181,494 + Psyr_1045 0.78 +1.1
1,181,495 - Psyr_1045 0.78 -0.5
1,181,611 + Psyr_1045 0.85 +0.3
1,181,611 + Psyr_1045 0.85 -0.9
1,181,910 + -0.7
1,181,911 - -0.9
1,181,911 - +0.3
1,181,911 - -1.8
1,181,946 + -0.7
1,181,946 + -2.5
1,181,947 - +1.4
1,182,387 + Psyr_1046 0.26 +1.1
1,182,388 - Psyr_1046 0.26 -0.6
1,182,472 + Psyr_1046 0.30 -1.3
1,182,472 + Psyr_1046 0.30 -1.1
1,182,472 + Psyr_1046 0.30 -0.7
1,182,472 + Psyr_1046 0.30 -2.1
1,182,473 - Psyr_1046 0.30 -0.3
1,182,473 - Psyr_1046 0.30 +0.5
1,182,473 - Psyr_1046 0.30 -0.0
1,182,524 - Psyr_1046 0.32 +0.4
1,182,772 - Psyr_1046 0.43 +0.1

Or see this region's nucleotide sequence