Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0872

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0871 and Psyr_0872 are separated by 88 nucleotidesPsyr_0872 and Psyr_0873 overlap by 4 nucleotidesPsyr_0873 and Psyr_0874 are separated by 201 nucleotides Psyr_0871: Psyr_0871 - PAS, at 992,870 to 994,183 _0871 Psyr_0872: Psyr_0872 - Alkaline phosphatase, at 994,272 to 995,843 _0872 Psyr_0873: Psyr_0873 - GCN5-related N-acetyltransferase, at 995,840 to 996,403 _0873 Psyr_0874: Psyr_0874 - outer membrane transport energization protein ExbD, at 996,605 to 997,012 _0874 Position (kb) 994 995 996Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 993.305 kb on - strand, within Psyr_0871at 993.422 kb on - strand, within Psyr_0871at 993.530 kb on - strand, within Psyr_0871at 993.535 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.602 kb on + strand, within Psyr_0871at 993.602 kb on + strand, within Psyr_0871at 993.602 kb on + strand, within Psyr_0871at 993.602 kb on + strand, within Psyr_0871at 993.603 kb on - strand, within Psyr_0871at 993.603 kb on - strand, within Psyr_0871at 993.603 kb on - strand, within Psyr_0871at 993.603 kb on - strand, within Psyr_0871at 993.603 kb on - strand, within Psyr_0871at 993.603 kb on - strand, within Psyr_0871at 993.603 kb on - strand, within Psyr_0871at 994.241 kb on - strandat 994.667 kb on - strand, within Psyr_0872at 994.667 kb on - strand, within Psyr_0872at 994.667 kb on - strand, within Psyr_0872at 994.667 kb on - strand, within Psyr_0872at 994.667 kb on - strand, within Psyr_0872at 994.667 kb on - strand, within Psyr_0872at 994.975 kb on + strand, within Psyr_0872at 994.975 kb on + strand, within Psyr_0872at 994.976 kb on - strand, within Psyr_0872at 994.979 kb on + strand, within Psyr_0872at 994.979 kb on + strand, within Psyr_0872at 994.980 kb on - strand, within Psyr_0872at 995.033 kb on - strand, within Psyr_0872at 995.033 kb on - strandat 995.033 kb on - strand, within Psyr_0872at 995.113 kb on + strand, within Psyr_0872at 995.114 kb on - strand, within Psyr_0872at 995.198 kb on - strand, within Psyr_0872at 995.198 kb on - strand, within Psyr_0872at 995.198 kb on - strand, within Psyr_0872at 995.283 kb on + strand, within Psyr_0872at 995.284 kb on - strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.302 kb on + strand, within Psyr_0872at 995.302 kb on + strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.365 kb on + strand, within Psyr_0872at 995.518 kb on - strand, within Psyr_0872at 995.518 kb on - strand, within Psyr_0872at 995.518 kb on - strand, within Psyr_0872at 995.577 kb on + strand, within Psyr_0872at 995.578 kb on - strand, within Psyr_0872at 995.578 kb on - strand, within Psyr_0872at 995.578 kb on - strand, within Psyr_0872at 995.686 kb on - strandat 995.784 kb on + strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.866 kb on - strandat 995.935 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 996.058 kb on + strand, within Psyr_0873at 996.383 kb on - strandat 996.481 kb on + strandat 996.481 kb on + strandat 996.482 kb on - strandat 996.482 kb on - strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.498 kb on - strandat 996.498 kb on - strandat 996.498 kb on - strandat 996.498 kb on - strandat 996.498 kb on - strandat 996.498 kb on - strandat 996.498 kb on - strandat 996.498 kb on - strandat 996.503 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.525 kb on + strandat 996.525 kb on + strandat 996.525 kb on + strandat 996.525 kb on + strandat 996.536 kb on + strandat 996.536 kb on + strandat 996.537 kb on - strandat 996.567 kb on + strandat 996.567 kb on + strandat 996.567 kb on + strandat 996.567 kb on + strandat 996.568 kb on - strandat 996.568 kb on - strandat 996.568 kb on - strandat 996.583 kb on - strandat 996.625 kb on + strandat 996.696 kb on + strand, within Psyr_0874at 996.702 kb on + strand, within Psyr_0874at 996.703 kb on - strand, within Psyr_0874at 996.703 kb on - strand, within Psyr_0874at 996.819 kb on + strand, within Psyr_0874at 996.820 kb on - strand, within Psyr_0874at 996.820 kb on - strand, within Psyr_0874

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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993,305 - Psyr_0871 0.33 +0.9
993,422 - Psyr_0871 0.42 +0.4
993,530 - Psyr_0871 0.50 +0.4
993,535 + Psyr_0871 0.51 -0.2
993,569 + Psyr_0871 0.53 +0.9
993,569 + Psyr_0871 0.53 -0.7
993,569 + Psyr_0871 0.53 +0.0
993,569 + Psyr_0871 0.53 +0.3
993,569 + Psyr_0871 0.53 -1.6
993,569 + Psyr_0871 0.53 -2.5
993,569 + Psyr_0871 0.53 -2.6
993,569 + Psyr_0871 0.53 -0.3
993,569 + Psyr_0871 0.53 -0.4
993,569 + Psyr_0871 0.53 -0.1
993,569 + Psyr_0871 0.53 -0.8
993,569 + Psyr_0871 0.53 -0.9
993,569 + Psyr_0871 0.53 +0.6
993,570 - Psyr_0871 0.53 -0.8
993,570 - Psyr_0871 0.53 -1.1
993,570 - Psyr_0871 0.53 +1.9
993,570 - Psyr_0871 0.53 +0.5
993,570 - Psyr_0871 0.53 +0.5
993,570 - Psyr_0871 0.53 +1.9
993,570 - Psyr_0871 0.53 +0.4
993,570 - Psyr_0871 0.53 +0.7
993,570 - Psyr_0871 0.53 +0.7
993,570 - Psyr_0871 0.53 +2.4
993,602 + Psyr_0871 0.56 +0.4
993,602 + Psyr_0871 0.56 -0.2
993,602 + Psyr_0871 0.56 -0.1
993,602 + Psyr_0871 0.56 -2.0
993,603 - Psyr_0871 0.56 -0.4
993,603 - Psyr_0871 0.56 -1.2
993,603 - Psyr_0871 0.56 -0.3
993,603 - Psyr_0871 0.56 -0.6
993,603 - Psyr_0871 0.56 -0.8
993,603 - Psyr_0871 0.56 -1.2
993,603 - Psyr_0871 0.56 -0.9
994,241 - -0.9
994,667 - Psyr_0872 0.25 +0.1
994,667 - Psyr_0872 0.25 -0.1
994,667 - Psyr_0872 0.25 +0.1
994,667 - Psyr_0872 0.25 -0.2
994,667 - Psyr_0872 0.25 +0.5
994,667 - Psyr_0872 0.25 +0.3
994,975 + Psyr_0872 0.45 +0.6
994,975 + Psyr_0872 0.45 +0.7
994,976 - Psyr_0872 0.45 +1.2
994,979 + Psyr_0872 0.45 +1.6
994,979 + Psyr_0872 0.45 +0.2
994,980 - Psyr_0872 0.45 +0.8
995,033 - Psyr_0872 0.48 -0.4
995,033 - -0.1
995,033 - Psyr_0872 0.48 +0.1
995,113 + Psyr_0872 0.53 -0.2
995,114 - Psyr_0872 0.54 +0.6
995,198 - Psyr_0872 0.59 +0.9
995,198 - Psyr_0872 0.59 +0.7
995,198 - Psyr_0872 0.59 -0.5
995,283 + Psyr_0872 0.64 -0.5
995,284 - Psyr_0872 0.64 -0.6
995,296 + Psyr_0872 0.65 +0.8
995,296 + Psyr_0872 0.65 -0.1
995,296 + Psyr_0872 0.65 -1.5
995,296 + Psyr_0872 0.65 +0.9
995,297 - Psyr_0872 0.65 +1.6
995,297 - Psyr_0872 0.65 +1.1
995,297 - Psyr_0872 0.65 +0.1
995,297 - Psyr_0872 0.65 -0.9
995,297 - Psyr_0872 0.65 +1.9
995,297 - Psyr_0872 0.65 -0.4
995,297 - Psyr_0872 0.65 +2.5
995,297 - Psyr_0872 0.65 -1.6
995,297 - Psyr_0872 0.65 +1.4
995,297 - Psyr_0872 0.65 -0.3
995,297 - Psyr_0872 0.65 -0.8
995,302 + Psyr_0872 0.66 +0.8
995,302 + Psyr_0872 0.66 +2.9
995,303 - Psyr_0872 0.66 -2.1
995,303 - Psyr_0872 0.66 +0.2
995,303 - Psyr_0872 0.66 +0.6
995,365 + Psyr_0872 0.70 +1.9
995,518 - Psyr_0872 0.79 +0.4
995,518 - Psyr_0872 0.79 -0.2
995,518 - Psyr_0872 0.79 +0.1
995,577 + Psyr_0872 0.83 -0.7
995,578 - Psyr_0872 0.83 +0.3
995,578 - Psyr_0872 0.83 +0.1
995,578 - Psyr_0872 0.83 +0.8
995,686 - -1.1
995,784 + +0.7
995,785 - +1.4
995,785 - +3.3
995,785 - +0.5
995,785 - -0.8
995,785 - +0.7
995,785 - +0.3
995,785 - -1.3
995,785 - +0.5
995,866 - +2.4
995,935 + Psyr_0873 0.17 -0.8
995,946 + Psyr_0873 0.19 -0.1
995,946 + Psyr_0873 0.19 +0.3
995,946 + Psyr_0873 0.19 +0.6
995,946 + Psyr_0873 0.19 +1.1
995,946 + Psyr_0873 0.19 -0.6
995,946 + Psyr_0873 0.19 -0.7
995,946 + Psyr_0873 0.19 +0.2
995,946 + Psyr_0873 0.19 +0.2
995,947 - Psyr_0873 0.19 +0.3
995,947 - Psyr_0873 0.19 +1.3
995,947 - Psyr_0873 0.19 -0.9
996,058 + Psyr_0873 0.39 +0.2
996,383 - -0.6
996,481 + -0.4
996,481 + -0.3
996,482 - +2.9
996,482 - +0.5
996,497 + +0.5
996,497 + +0.6
996,497 + +0.1
996,497 + +0.4
996,498 - -0.5
996,498 - +0.8
996,498 - -0.3
996,498 - -0.2
996,498 - -1.4
996,498 - -0.2
996,498 - +0.6
996,498 - +2.3
996,503 + +0.1
996,514 + -0.3
996,514 + +0.2
996,514 + -0.7
996,514 + -0.7
996,514 + +1.1
996,514 + -0.6
996,514 + -0.4
996,514 + +0.0
996,514 + +0.7
996,514 + +1.4
996,514 + +0.9
996,514 + +1.4
996,514 + -0.1
996,514 + -1.6
996,514 + -0.6
996,515 - +1.5
996,515 - +0.7
996,515 - -0.6
996,515 - +0.9
996,515 - -0.2
996,515 - -0.2
996,515 - -0.9
996,525 + -2.2
996,525 + -3.0
996,525 + +1.9
996,525 + +0.0
996,536 + +0.7
996,536 + -2.3
996,537 - +1.1
996,567 + -1.5
996,567 + +2.7
996,567 + -0.2
996,567 + +0.8
996,568 - +0.8
996,568 - +0.6
996,568 - +0.0
996,583 - +0.7
996,625 + -0.1
996,696 + Psyr_0874 0.22 +0.9
996,702 + Psyr_0874 0.24 +0.5
996,703 - Psyr_0874 0.24 +1.4
996,703 - Psyr_0874 0.24 +0.4
996,819 + Psyr_0874 0.52 -1.4
996,820 - Psyr_0874 0.53 -0.8
996,820 - Psyr_0874 0.53 -0.5

Or see this region's nucleotide sequence