Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0781 and Psyr_0782 overlap by 38 nucleotides Psyr_0782 and Psyr_0783 overlap by 4 nucleotides
Psyr_0781: Psyr_0781 - Protein-glutamate methylesterase, at 887,924 to 889,000
_0781
Psyr_0782: Psyr_0782 - CheD, at 888,963 to 889,496
_0782
Psyr_0783: Psyr_0783 - MCP methyltransferase, CheR-type, at 889,493 to 890,302
_0783
Position (kb) 887
888
889
890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 886.977 kb on - strand at 887.007 kb on - strand at 887.010 kb on + strand at 887.010 kb on + strand at 887.010 kb on + strand at 887.010 kb on + strand at 887.011 kb on - strand at 887.019 kb on + strand at 887.019 kb on + strand at 887.019 kb on + strand at 887.019 kb on + strand at 887.019 kb on + strand at 887.020 kb on - strand at 887.026 kb on + strand at 887.026 kb on + strand at 887.026 kb on + strand at 887.026 kb on + strand at 887.026 kb on + strand at 887.026 kb on + strand at 887.027 kb on - strand at 887.027 kb on - strand at 887.033 kb on - strand at 887.145 kb on + strand at 887.146 kb on - strand at 887.185 kb on + strand at 887.185 kb on + strand at 887.185 kb on + strand at 887.185 kb on + strand at 887.185 kb on + strand at 887.185 kb on + strand at 887.185 kb on + strand at 887.185 kb on + strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.354 kb on + strand at 887.354 kb on + strand at 887.354 kb on + strand at 887.355 kb on - strand at 887.355 kb on - strand at 887.355 kb on - strand at 887.355 kb on - strand at 887.500 kb on + strand at 887.501 kb on - strand at 887.501 kb on - strand at 887.501 kb on - strand at 887.501 kb on - strand at 887.501 kb on - strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.531 kb on - strand at 887.531 kb on - strand at 887.531 kb on - strand at 887.531 kb on - strand at 887.531 kb on - strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.604 kb on - strand at 887.604 kb on - strand at 887.604 kb on - strand at 887.657 kb on - strand at 887.657 kb on - strand at 887.657 kb on - strand at 887.657 kb on - strand at 887.666 kb on - strand at 887.666 kb on - strand at 887.679 kb on + strand at 887.679 kb on + strand at 887.679 kb on + strand at 887.679 kb on + strand at 887.679 kb on + strand at 887.680 kb on - strand at 887.680 kb on - strand at 887.680 kb on - strand at 888.219 kb on + strand, within Psyr_0781 at 888.219 kb on + strand, within Psyr_0781 at 888.222 kb on + strand, within Psyr_0781 at 888.223 kb on - strand, within Psyr_0781 at 888.223 kb on - strand, within Psyr_0781 at 888.445 kb on + strand, within Psyr_0781 at 888.446 kb on - strand, within Psyr_0781 at 888.615 kb on - strand, within Psyr_0781 at 888.911 kb on - strand at 888.942 kb on - strand at 888.942 kb on - strand at 888.953 kb on + strand at 888.953 kb on + strand at 888.953 kb on + strand at 888.953 kb on + strand at 888.954 kb on - strand at 888.954 kb on - strand at 888.954 kb on - strand at 888.977 kb on + strand at 888.978 kb on - strand at 888.978 kb on - strand at 889.038 kb on + strand, within Psyr_0782 at 889.038 kb on + strand, within Psyr_0782 at 889.038 kb on + strand, within Psyr_0782 at 889.038 kb on + strand, within Psyr_0782 at 889.039 kb on - strand, within Psyr_0782 at 889.039 kb on - strand, within Psyr_0782 at 889.039 kb on - strand, within Psyr_0782 at 889.039 kb on - strand, within Psyr_0782 at 889.231 kb on + strand, within Psyr_0782 at 889.275 kb on + strand, within Psyr_0782 at 889.275 kb on + strand, within Psyr_0782 at 889.276 kb on - strand, within Psyr_0782 at 889.276 kb on - strand, within Psyr_0782 at 889.276 kb on - strand, within Psyr_0782 at 889.276 kb on - strand, within Psyr_0782 at 889.297 kb on + strand, within Psyr_0782 at 889.297 kb on + strand, within Psyr_0782 at 889.297 kb on + strand, within Psyr_0782 at 889.297 kb on + strand, within Psyr_0782 at 889.298 kb on - strand, within Psyr_0782 at 889.298 kb on - strand, within Psyr_0782 at 889.298 kb on - strand, within Psyr_0782 at 889.327 kb on - strand, within Psyr_0782 at 889.339 kb on - strand, within Psyr_0782 at 889.389 kb on - strand, within Psyr_0782 at 889.467 kb on + strand at 889.467 kb on + strand at 889.468 kb on - strand at 889.468 kb on - strand at 889.468 kb on - strand at 889.578 kb on + strand, within Psyr_0783 at 889.578 kb on + strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.644 kb on + strand, within Psyr_0783 at 889.644 kb on + strand, within Psyr_0783 at 889.645 kb on - strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.795 kb on - strand, within Psyr_0783 at 889.795 kb on - strand, within Psyr_0783 at 889.795 kb on - strand, within Psyr_0783 at 889.948 kb on - strand, within Psyr_0783
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 886,977 - -0.8 887,007 - +0.7 887,010 + +0.6 887,010 + -1.8 887,010 + +0.3 887,010 + +0.9 887,011 - +1.4 887,019 + -0.7 887,019 + +1.5 887,019 + -0.0 887,019 + +0.3 887,019 + -0.9 887,020 - +1.3 887,026 + +0.3 887,026 + +0.2 887,026 + -0.1 887,026 + +0.6 887,026 + -0.5 887,026 + -0.2 887,027 - -1.9 887,027 - -0.6 887,033 - +0.5 887,145 + -0.4 887,146 - -1.3 887,185 + +0.9 887,185 + -0.1 887,185 + +0.5 887,185 + +1.1 887,185 + +1.0 887,185 + -1.3 887,185 + +0.6 887,185 + -1.4 887,186 - -0.3 887,186 - +0.3 887,186 - -0.2 887,186 - -0.2 887,186 - -2.1 887,186 - +1.2 887,186 - +0.9 887,186 - -0.3 887,186 - -0.1 887,354 + +0.5 887,354 + -0.1 887,354 + +1.9 887,355 - -0.7 887,355 - +1.3 887,355 - +0.5 887,355 - +3.2 887,500 + -0.1 887,501 - +0.5 887,501 - -0.9 887,501 - -1.8 887,501 - +1.2 887,501 - -0.8 887,530 + -0.9 887,530 + -1.4 887,530 + -0.8 887,530 + -1.4 887,530 + -1.3 887,530 + -0.5 887,530 + +0.8 887,530 + -2.1 887,530 + +1.6 887,531 - -1.0 887,531 - -0.2 887,531 - -1.1 887,531 - -1.3 887,531 - +0.1 887,542 + +1.1 887,542 + +1.3 887,542 + -1.6 887,542 + +1.9 887,542 + -0.7 887,542 + +0.9 887,542 + -0.1 887,542 + -0.3 887,542 + +0.6 887,542 + -1.4 887,542 + -2.2 887,543 - +1.1 887,543 - +2.1 887,543 - +0.2 887,543 - -0.1 887,543 - -2.9 887,543 - +0.1 887,543 - -0.7 887,543 - -1.1 887,543 - -1.3 887,543 - +1.1 887,604 - -0.7 887,604 - -0.3 887,604 - -0.2 887,657 - +0.4 887,657 - -0.7 887,657 - -0.3 887,657 - -0.9 887,666 - -0.1 887,666 - -0.8 887,679 + +0.2 887,679 + -0.2 887,679 + -0.3 887,679 + -0.1 887,679 + -1.6 887,680 - -1.7 887,680 - -1.6 887,680 - -0.4 888,219 + Psyr_0781 0.27 +1.6 888,219 + Psyr_0781 0.27 +0.8 888,222 + Psyr_0781 0.28 +0.4 888,223 - Psyr_0781 0.28 -0.4 888,223 - Psyr_0781 0.28 -0.0 888,445 + Psyr_0781 0.48 +0.4 888,446 - Psyr_0781 0.48 +0.9 888,615 - Psyr_0781 0.64 +1.0 888,911 - +1.3 888,942 - -0.7 888,942 - +1.4 888,953 + -0.8 888,953 + +0.6 888,953 + +0.3 888,953 + +1.1 888,954 - +0.3 888,954 - +1.5 888,954 - +0.9 888,977 + +0.7 888,978 - -0.7 888,978 - +1.5 889,038 + Psyr_0782 0.14 +0.3 889,038 + Psyr_0782 0.14 +0.6 889,038 + Psyr_0782 0.14 +1.2 889,038 + Psyr_0782 0.14 +0.5 889,039 - Psyr_0782 0.14 -1.1 889,039 - Psyr_0782 0.14 -1.2 889,039 - Psyr_0782 0.14 +0.2 889,039 - Psyr_0782 0.14 +0.3 889,231 + Psyr_0782 0.50 -0.1 889,275 + Psyr_0782 0.58 -0.5 889,275 + Psyr_0782 0.58 +0.6 889,276 - Psyr_0782 0.59 +0.2 889,276 - Psyr_0782 0.59 +0.5 889,276 - Psyr_0782 0.59 +0.3 889,276 - Psyr_0782 0.59 +0.9 889,297 + Psyr_0782 0.63 -1.1 889,297 + Psyr_0782 0.63 +0.6 889,297 + Psyr_0782 0.63 -0.7 889,297 + Psyr_0782 0.63 -1.0 889,298 - Psyr_0782 0.63 -0.4 889,298 - Psyr_0782 0.63 -1.4 889,298 - Psyr_0782 0.63 +1.5 889,327 - Psyr_0782 0.68 -1.5 889,339 - Psyr_0782 0.70 +0.9 889,389 - Psyr_0782 0.80 -0.3 889,467 + +1.5 889,467 + +0.5 889,468 - +2.5 889,468 - -0.3 889,468 - +1.3 889,578 + Psyr_0783 0.10 +0.9 889,578 + Psyr_0783 0.10 -1.1 889,579 - Psyr_0783 0.11 -1.4 889,579 - Psyr_0783 0.11 -0.1 889,579 - Psyr_0783 0.11 -0.2 889,579 - Psyr_0783 0.11 +1.3 889,644 + Psyr_0783 0.19 -0.3 889,644 + Psyr_0783 0.19 -1.4 889,645 - Psyr_0783 0.19 +0.5 889,794 + Psyr_0783 0.37 -0.6 889,794 + Psyr_0783 0.37 -0.0 889,794 + Psyr_0783 0.37 -0.2 889,794 + Psyr_0783 0.37 +1.5 889,794 + Psyr_0783 0.37 -0.2 889,795 - Psyr_0783 0.37 -0.6 889,795 - Psyr_0783 0.37 +0.1 889,795 - Psyr_0783 0.37 +1.7 889,948 - Psyr_0783 0.56 +0.4
Or see this region's nucleotide sequence