Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0776

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0774 and Psyr_0775 are separated by 14 nucleotidesPsyr_0775 and Psyr_0776 are separated by 10 nucleotidesPsyr_0776 and Psyr_0777 are separated by 258 nucleotides Psyr_0774: Psyr_0774 - monosaccharide ABC transporter membrane protein, CUT2 family, at 878,618 to 879,637 _0774 Psyr_0775: Psyr_0775 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 879,652 to 880,428 _0775 Psyr_0776: Psyr_0776 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 880,439 to 881,383 _0776 Psyr_0777: Psyr_0777 - transcriptional regulator, LacI family, at 881,642 to 882,655 _0777 Position (kb) 880 881 882Strain fitness (log2 ratio) -2 -1 0 1 2 3at 879.491 kb on + strand, within Psyr_0774at 879.681 kb on + strandat 879.681 kb on + strandat 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.985 kb on + strand, within Psyr_0775at 880.355 kb on - strandat 880.381 kb on - strandat 880.440 kb on + strandat 880.440 kb on + strandat 880.440 kb on + strandat 880.441 kb on - strandat 880.728 kb on + strand, within Psyr_0776at 880.728 kb on + strand, within Psyr_0776at 880.728 kb on + strand, within Psyr_0776at 880.728 kb on + strand, within Psyr_0776at 880.729 kb on - strand, within Psyr_0776at 880.729 kb on - strand, within Psyr_0776at 880.729 kb on - strand, within Psyr_0776at 880.729 kb on - strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.947 kb on + strand, within Psyr_0776at 880.947 kb on + strand, within Psyr_0776at 880.947 kb on + strand, within Psyr_0776at 880.948 kb on - strand, within Psyr_0776at 880.948 kb on - strand, within Psyr_0776at 880.948 kb on - strand, within Psyr_0776at 880.948 kb on - strand, within Psyr_0776at 880.959 kb on + strand, within Psyr_0776at 881.089 kb on + strand, within Psyr_0776at 881.140 kb on + strand, within Psyr_0776at 881.140 kb on + strand, within Psyr_0776at 881.140 kb on + strand, within Psyr_0776at 881.140 kb on + strand, within Psyr_0776at 881.141 kb on - strand, within Psyr_0776at 881.141 kb on - strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.143 kb on - strand, within Psyr_0776at 881.143 kb on - strandat 881.143 kb on - strand, within Psyr_0776at 881.143 kb on - strand, within Psyr_0776at 881.143 kb on - strand, within Psyr_0776at 881.143 kb on - strand, within Psyr_0776at 881.143 kb on - strand, within Psyr_0776at 881.256 kb on + strand, within Psyr_0776at 881.256 kb on + strand, within Psyr_0776at 881.256 kb on + strand, within Psyr_0776at 881.257 kb on - strand, within Psyr_0776at 881.257 kb on - strand, within Psyr_0776at 881.257 kb on - strand, within Psyr_0776at 881.257 kb on - strand, within Psyr_0776at 881.395 kb on + strandat 881.542 kb on + strandat 881.542 kb on + strandat 881.542 kb on + strandat 881.625 kb on + strandat 881.625 kb on + strandat 881.625 kb on + strandat 881.626 kb on - strandat 881.626 kb on - strandat 881.661 kb on - strandat 881.661 kb on - strandat 881.788 kb on + strand, within Psyr_0777at 881.788 kb on + strand, within Psyr_0777at 881.788 kb on + strand, within Psyr_0777at 881.788 kb on + strand, within Psyr_0777at 881.788 kb on + strand, within Psyr_0777at 881.789 kb on - strand, within Psyr_0777at 881.789 kb on - strand, within Psyr_0777at 881.789 kb on - strand, within Psyr_0777at 881.817 kb on + strand, within Psyr_0777at 881.866 kb on + strand, within Psyr_0777at 881.955 kb on - strand, within Psyr_0777at 881.955 kb on - strand, within Psyr_0777at 882.010 kb on - strand, within Psyr_0777at 882.010 kb on - strand, within Psyr_0777at 882.064 kb on - strand, within Psyr_0777at 882.138 kb on + strand, within Psyr_0777at 882.139 kb on - strand, within Psyr_0777at 882.139 kb on - strand, within Psyr_0777at 882.139 kb on - strand, within Psyr_0777at 882.226 kb on + strand, within Psyr_0777at 882.226 kb on + strand, within Psyr_0777at 882.227 kb on - strand, within Psyr_0777at 882.376 kb on + strand, within Psyr_0777at 882.377 kb on - strand, within Psyr_0777at 882.377 kb on - strand, within Psyr_0777at 882.377 kb on - strand, within Psyr_0777at 882.378 kb on + strand, within Psyr_0777at 882.378 kb on + strandat 882.378 kb on + strand, within Psyr_0777at 882.378 kb on + strand, within Psyr_0777at 882.379 kb on - strand, within Psyr_0777at 882.379 kb on - strand, within Psyr_0777at 882.379 kb on - strand, within Psyr_0777

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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879,491 + Psyr_0774 0.86 +0.9
879,681 + +0.6
879,681 + -0.4
879,758 + Psyr_0775 0.14 -0.8
879,758 + Psyr_0775 0.14 +1.1
879,758 + Psyr_0775 0.14 +0.5
879,758 + Psyr_0775 0.14 +2.8
879,758 + Psyr_0775 0.14 -0.9
879,758 + Psyr_0775 0.14 -0.7
879,758 + Psyr_0775 0.14 +1.3
879,758 + Psyr_0775 0.14 -0.1
879,758 + Psyr_0775 0.14 +0.4
879,758 + Psyr_0775 0.14 -1.1
879,758 + Psyr_0775 0.14 -1.8
879,758 + Psyr_0775 0.14 +0.9
879,758 + Psyr_0775 0.14 -0.0
879,758 + Psyr_0775 0.14 +0.3
879,758 + Psyr_0775 0.14 -1.3
879,759 - Psyr_0775 0.14 -0.1
879,759 - Psyr_0775 0.14 -0.6
879,759 - Psyr_0775 0.14 +0.7
879,759 - Psyr_0775 0.14 -0.1
879,759 - Psyr_0775 0.14 -0.9
879,759 - Psyr_0775 0.14 -0.6
879,759 - Psyr_0775 0.14 -0.1
879,759 - Psyr_0775 0.14 +0.4
879,759 - Psyr_0775 0.14 +0.2
879,985 + Psyr_0775 0.43 -1.7
880,355 - +0.5
880,381 - -0.3
880,440 + -1.2
880,440 + -0.8
880,440 + -0.3
880,441 - +0.5
880,728 + Psyr_0776 0.31 -2.0
880,728 + Psyr_0776 0.31 +0.9
880,728 + Psyr_0776 0.31 -0.8
880,728 + Psyr_0776 0.31 -1.1
880,729 - Psyr_0776 0.31 -0.0
880,729 - Psyr_0776 0.31 +1.5
880,729 - Psyr_0776 0.31 -0.4
880,729 - Psyr_0776 0.31 -0.7
880,887 + Psyr_0776 0.47 +0.3
880,887 + Psyr_0776 0.47 +0.2
880,887 + Psyr_0776 0.47 +0.5
880,887 + Psyr_0776 0.47 -0.0
880,887 + Psyr_0776 0.47 -1.4
880,887 + Psyr_0776 0.47 -0.4
880,888 - Psyr_0776 0.48 -1.1
880,888 - Psyr_0776 0.48 -0.7
880,888 - Psyr_0776 0.48 +0.1
880,888 - Psyr_0776 0.48 -0.8
880,888 - Psyr_0776 0.48 +0.4
880,888 - Psyr_0776 0.48 -0.1
880,888 - Psyr_0776 0.48 -0.3
880,947 + Psyr_0776 0.54 -2.1
880,947 + Psyr_0776 0.54 -1.1
880,947 + Psyr_0776 0.54 -0.8
880,948 - Psyr_0776 0.54 +0.9
880,948 - Psyr_0776 0.54 -1.0
880,948 - Psyr_0776 0.54 +0.7
880,948 - Psyr_0776 0.54 +0.5
880,959 + Psyr_0776 0.55 -0.1
881,089 + Psyr_0776 0.69 -0.1
881,140 + Psyr_0776 0.74 -0.6
881,140 + Psyr_0776 0.74 +0.8
881,140 + Psyr_0776 0.74 +0.2
881,140 + Psyr_0776 0.74 -0.4
881,141 - Psyr_0776 0.74 -0.6
881,141 - Psyr_0776 0.74 +0.1
881,142 + Psyr_0776 0.74 -1.2
881,142 + Psyr_0776 0.74 +0.5
881,142 + Psyr_0776 0.74 -0.4
881,142 + Psyr_0776 0.74 -0.1
881,142 + Psyr_0776 0.74 -1.1
881,142 + Psyr_0776 0.74 -1.3
881,142 + Psyr_0776 0.74 -0.7
881,143 - Psyr_0776 0.74 +0.1
881,143 - +0.9
881,143 - Psyr_0776 0.74 -1.1
881,143 - Psyr_0776 0.74 -0.1
881,143 - Psyr_0776 0.74 -0.3
881,143 - Psyr_0776 0.74 -0.2
881,143 - Psyr_0776 0.74 +0.1
881,256 + Psyr_0776 0.86 -1.9
881,256 + Psyr_0776 0.86 +0.4
881,256 + Psyr_0776 0.86 +0.3
881,257 - Psyr_0776 0.87 +0.8
881,257 - Psyr_0776 0.87 +0.5
881,257 - Psyr_0776 0.87 -0.5
881,257 - Psyr_0776 0.87 -0.5
881,395 + +0.5
881,542 + -0.1
881,542 + -0.6
881,542 + +0.1
881,625 + -0.7
881,625 + -0.2
881,625 + +1.7
881,626 - +0.9
881,626 - -0.1
881,661 - +0.7
881,661 - +2.2
881,788 + Psyr_0777 0.14 -1.7
881,788 + Psyr_0777 0.14 +1.5
881,788 + Psyr_0777 0.14 +0.9
881,788 + Psyr_0777 0.14 -0.7
881,788 + Psyr_0777 0.14 -0.1
881,789 - Psyr_0777 0.14 -0.9
881,789 - Psyr_0777 0.14 -0.5
881,789 - Psyr_0777 0.14 -0.3
881,817 + Psyr_0777 0.17 +0.5
881,866 + Psyr_0777 0.22 +0.4
881,955 - Psyr_0777 0.31 +1.6
881,955 - Psyr_0777 0.31 -1.5
882,010 - Psyr_0777 0.36 -0.5
882,010 - Psyr_0777 0.36 -1.0
882,064 - Psyr_0777 0.42 -0.7
882,138 + Psyr_0777 0.49 +0.6
882,139 - Psyr_0777 0.49 -0.9
882,139 - Psyr_0777 0.49 +1.5
882,139 - Psyr_0777 0.49 -0.3
882,226 + Psyr_0777 0.58 -0.3
882,226 + Psyr_0777 0.58 -0.6
882,227 - Psyr_0777 0.58 +0.3
882,376 + Psyr_0777 0.72 -0.9
882,377 - Psyr_0777 0.72 -0.7
882,377 - Psyr_0777 0.72 +1.7
882,377 - Psyr_0777 0.72 +0.7
882,378 + Psyr_0777 0.73 +0.4
882,378 + -1.4
882,378 + Psyr_0777 0.73 +1.5
882,378 + Psyr_0777 0.73 -1.0
882,379 - Psyr_0777 0.73 -0.3
882,379 - Psyr_0777 0.73 +0.9
882,379 - Psyr_0777 0.73 -2.5

Or see this region's nucleotide sequence