Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0700 and Psyr_0701 are separated by 240 nucleotides Psyr_0701 and Psyr_0702 are separated by 32 nucleotides Psyr_0702 and Psyr_0703 are separated by 216 nucleotides
Psyr_0700: Psyr_0700 - Trans-hexaprenyltranstransferase, at 803,577 to 804,545
_0700
Psyr_0701: Psyr_0701 - LSU ribosomal protein L21P, at 804,786 to 805,097
_0701
Psyr_0702: Psyr_0702 - LSU ribosomal protein L27P, at 805,130 to 805,405
_0702
Psyr_0703: Psyr_0703 - GTP-binding protein, HSR1-related:GTP1/OBG subdomain protein, at 805,622 to 806,845
_0703
Position (kb) 804
805
806 Strain fitness (log2 ratio) -1
0
1
2 at 804.583 kb on - strand at 804.583 kb on - strand at 804.583 kb on - strand at 804.583 kb on - strand at 804.609 kb on + strand at 804.610 kb on - strand at 804.610 kb on - strand at 804.688 kb on + strand at 805.455 kb on + strand at 805.461 kb on + strand at 805.573 kb on + strand at 805.573 kb on + strand at 805.573 kb on + strand at 805.573 kb on + strand at 805.573 kb on + strand at 805.577 kb on + strand at 805.577 kb on + strand at 805.577 kb on + strand at 805.577 kb on + strand at 805.577 kb on + strand at 805.582 kb on + strand at 805.582 kb on + strand at 805.582 kb on + strand at 805.582 kb on + strand at 805.582 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 804,583 - -1.0 804,583 - +1.3 804,583 - +2.0 804,583 - -1.6 804,609 + +0.2 804,610 - -0.2 804,610 - +1.4 804,688 + +0.3 805,455 + +1.9 805,461 + -0.6 805,573 + +0.0 805,573 + -1.2 805,573 + -0.8 805,573 + -1.6 805,573 + +0.6 805,577 + +0.3 805,577 + -0.0 805,577 + +0.1 805,577 + +0.6 805,577 + -0.2 805,582 + +0.5 805,582 + +0.2 805,582 + +0.4 805,582 + +1.1 805,582 + +1.4
Or see this region's nucleotide sequence