Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0673

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0672 and Psyr_0673 are separated by 11 nucleotidesPsyr_0673 and Psyr_0674 are separated by 532 nucleotides Psyr_0672: Psyr_0672 - nucleoside ABC transporter membrane protein, at 761,375 to 762,475 _0672 Psyr_0673: Psyr_0673 - nucleoside ABC transporter ATP-binding protein, at 762,487 to 764,040 _0673 Psyr_0674: Psyr_0674 - Protein of unknown function UPF0029, at 764,573 to 765,166 _0674 Position (kb) 762 763 764 765Strain fitness (log2 ratio) -2 -1 0 1 2 3at 761.550 kb on + strand, within Psyr_0672at 761.550 kb on + strand, within Psyr_0672at 761.550 kb on + strand, within Psyr_0672at 761.550 kb on + strand, within Psyr_0672at 761.551 kb on - strand, within Psyr_0672at 761.551 kb on - strand, within Psyr_0672at 761.551 kb on - strand, within Psyr_0672at 761.551 kb on - strand, within Psyr_0672at 761.631 kb on + strand, within Psyr_0672at 761.631 kb on + strand, within Psyr_0672at 761.800 kb on - strand, within Psyr_0672at 761.868 kb on + strand, within Psyr_0672at 761.868 kb on + strand, within Psyr_0672at 761.868 kb on + strand, within Psyr_0672at 761.869 kb on - strand, within Psyr_0672at 761.869 kb on - strand, within Psyr_0672at 761.869 kb on - strand, within Psyr_0672at 761.988 kb on + strand, within Psyr_0672at 761.989 kb on - strand, within Psyr_0672at 761.989 kb on - strand, within Psyr_0672at 762.012 kb on + strand, within Psyr_0672at 762.012 kb on + strand, within Psyr_0672at 762.012 kb on + strand, within Psyr_0672at 762.012 kb on + strand, within Psyr_0672at 762.012 kb on + strand, within Psyr_0672at 762.013 kb on - strand, within Psyr_0672at 762.013 kb on - strand, within Psyr_0672at 762.013 kb on - strand, within Psyr_0672at 762.025 kb on + strand, within Psyr_0672at 762.025 kb on + strand, within Psyr_0672at 762.025 kb on + strand, within Psyr_0672at 762.026 kb on - strand, within Psyr_0672at 762.154 kb on + strand, within Psyr_0672at 762.154 kb on + strand, within Psyr_0672at 762.154 kb on + strand, within Psyr_0672at 762.155 kb on - strand, within Psyr_0672at 762.155 kb on - strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 763.192 kb on + strand, within Psyr_0673at 763.192 kb on + strand, within Psyr_0673at 763.192 kb on + strand, within Psyr_0673at 763.193 kb on - strand, within Psyr_0673at 763.295 kb on + strand, within Psyr_0673at 763.450 kb on - strand, within Psyr_0673at 763.450 kb on - strand, within Psyr_0673at 763.647 kb on + strand, within Psyr_0673at 763.652 kb on + strand, within Psyr_0673at 763.874 kb on + strand, within Psyr_0673at 763.874 kb on + strand, within Psyr_0673at 763.875 kb on - strand, within Psyr_0673at 763.875 kb on - strand, within Psyr_0673at 763.875 kb on - strand, within Psyr_0673at 763.875 kb on - strand, within Psyr_0673at 763.875 kb on - strand, within Psyr_0673at 763.999 kb on - strandat 764.257 kb on - strandat 764.332 kb on + strandat 764.332 kb on + strandat 764.332 kb on + strandat 764.332 kb on + strandat 764.332 kb on + strandat 764.333 kb on - strandat 764.361 kb on - strandat 764.376 kb on - strandat 764.391 kb on + strandat 764.392 kb on - strandat 764.401 kb on + strandat 764.512 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.534 kb on - strandat 764.534 kb on - strandat 764.534 kb on - strandat 764.534 kb on - strandat 764.534 kb on - strandat 764.534 kb on - strandat 764.550 kb on + strandat 764.551 kb on - strandat 764.551 kb on - strandat 764.551 kb on - strandat 764.551 kb on - strandat 764.551 kb on - strandat 764.551 kb on - strandat 764.844 kb on + strand, within Psyr_0674at 764.845 kb on - strand, within Psyr_0674at 764.886 kb on + strand, within Psyr_0674

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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761,550 + Psyr_0672 0.16 -0.1
761,550 + Psyr_0672 0.16 -1.2
761,550 + Psyr_0672 0.16 +2.0
761,550 + Psyr_0672 0.16 -0.2
761,551 - Psyr_0672 0.16 -1.0
761,551 - Psyr_0672 0.16 +1.6
761,551 - Psyr_0672 0.16 +1.5
761,551 - Psyr_0672 0.16 +1.1
761,631 + Psyr_0672 0.23 +0.3
761,631 + Psyr_0672 0.23 -0.3
761,800 - Psyr_0672 0.39 +1.2
761,868 + Psyr_0672 0.45 -1.1
761,868 + Psyr_0672 0.45 +0.1
761,868 + Psyr_0672 0.45 -0.3
761,869 - Psyr_0672 0.45 +3.0
761,869 - Psyr_0672 0.45 +0.7
761,869 - Psyr_0672 0.45 +1.0
761,988 + Psyr_0672 0.56 +0.0
761,989 - Psyr_0672 0.56 +0.0
761,989 - Psyr_0672 0.56 +1.1
762,012 + Psyr_0672 0.58 -2.5
762,012 + Psyr_0672 0.58 +0.4
762,012 + Psyr_0672 0.58 +0.6
762,012 + Psyr_0672 0.58 +0.1
762,012 + Psyr_0672 0.58 +0.0
762,013 - Psyr_0672 0.58 +0.1
762,013 - Psyr_0672 0.58 +2.0
762,013 - Psyr_0672 0.58 +0.6
762,025 + Psyr_0672 0.59 +0.4
762,025 + Psyr_0672 0.59 -2.5
762,025 + Psyr_0672 0.59 -0.3
762,026 - Psyr_0672 0.59 +2.0
762,154 + Psyr_0672 0.71 -0.2
762,154 + Psyr_0672 0.71 +0.4
762,154 + Psyr_0672 0.71 -0.8
762,155 - Psyr_0672 0.71 -0.2
762,155 - Psyr_0672 0.71 +1.0
762,212 + Psyr_0672 0.76 +0.7
762,212 + Psyr_0672 0.76 +1.6
762,212 + Psyr_0672 0.76 +0.2
762,212 + Psyr_0672 0.76 +0.0
762,212 + Psyr_0672 0.76 -0.4
762,212 + Psyr_0672 0.76 +0.3
762,212 + Psyr_0672 0.76 +1.6
762,212 + Psyr_0672 0.76 -2.1
762,212 + Psyr_0672 0.76 -0.2
762,212 + Psyr_0672 0.76 -1.2
762,212 + Psyr_0672 0.76 +0.6
762,212 + Psyr_0672 0.76 -0.1
762,212 + Psyr_0672 0.76 -0.8
762,212 + Psyr_0672 0.76 +0.1
762,212 + Psyr_0672 0.76 -0.3
762,212 + Psyr_0672 0.76 +0.5
762,212 + Psyr_0672 0.76 +2.0
762,212 + Psyr_0672 0.76 -0.4
762,212 + Psyr_0672 0.76 -0.1
762,213 - Psyr_0672 0.76 +0.8
762,213 - Psyr_0672 0.76 +0.3
762,213 - Psyr_0672 0.76 +0.5
762,213 - Psyr_0672 0.76 -0.7
762,213 - Psyr_0672 0.76 -1.3
762,213 - Psyr_0672 0.76 -1.5
762,213 - Psyr_0672 0.76 -0.6
762,213 - Psyr_0672 0.76 -1.7
762,213 - Psyr_0672 0.76 -2.6
762,213 - Psyr_0672 0.76 -0.9
762,213 - Psyr_0672 0.76 +1.4
762,213 - Psyr_0672 0.76 -0.1
762,213 - Psyr_0672 0.76 -0.3
762,213 - Psyr_0672 0.76 +0.4
762,213 - Psyr_0672 0.76 +0.1
763,192 + Psyr_0673 0.45 +0.7
763,192 + Psyr_0673 0.45 +2.0
763,192 + Psyr_0673 0.45 -2.2
763,193 - Psyr_0673 0.45 -1.0
763,295 + Psyr_0673 0.52 -2.1
763,450 - Psyr_0673 0.62 +0.5
763,450 - Psyr_0673 0.62 +0.7
763,647 + Psyr_0673 0.75 +2.0
763,652 + Psyr_0673 0.75 -0.9
763,874 + Psyr_0673 0.89 +2.4
763,874 + Psyr_0673 0.89 +0.1
763,875 - Psyr_0673 0.89 +0.1
763,875 - Psyr_0673 0.89 +1.0
763,875 - Psyr_0673 0.89 -0.1
763,875 - Psyr_0673 0.89 +2.1
763,875 - Psyr_0673 0.89 +0.0
763,999 - -0.8
764,257 - -1.6
764,332 + -1.8
764,332 + +0.4
764,332 + -0.4
764,332 + -1.4
764,332 + -1.2
764,333 - +1.1
764,361 - +0.3
764,376 - +0.1
764,391 + +0.3
764,392 - +0.2
764,401 + -0.7
764,512 + -0.0
764,533 + -0.2
764,533 + +0.9
764,533 + -0.3
764,533 + +3.3
764,534 - -1.2
764,534 - -1.0
764,534 - +0.9
764,534 - +0.5
764,534 - +1.0
764,534 - -1.0
764,550 + +0.3
764,551 - +2.2
764,551 - +0.3
764,551 - -0.0
764,551 - -0.9
764,551 - -1.2
764,551 - -0.4
764,844 + Psyr_0674 0.46 -0.5
764,845 - Psyr_0674 0.46 -0.6
764,886 + Psyr_0674 0.53 +0.1

Or see this region's nucleotide sequence