Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0637 and Psyr_0638 are separated by 14 nucleotides Psyr_0638 and Psyr_0639 are separated by 84 nucleotides Psyr_0639 and Psyr_0640 are separated by 18 nucleotides Psyr_0640 and Psyr_0641 are separated by 19 nucleotides
Psyr_0637: Psyr_0637 - LrgB-like protein, at 726,631 to 727,347
_0637
Psyr_0638: Psyr_0638 - Peptidase S16, lon N-terminal, at 727,362 to 727,952
_0638
Psyr_0639: Psyr_0639 - lipoprotein, putative, at 728,037 to 728,603
_0639
Psyr_0640: Psyr_0640 - lipoprotein, putative, at 728,622 to 729,260
_0640
Psyr_0641: Psyr_0641 - smtA protein, at 729,280 to 730,029
_0641
Position (kb) 728
729 Strain fitness (log2 ratio) -2
-1
0
1
2 at 727.131 kb on - strand, within Psyr_0637 at 727.345 kb on + strand at 727.346 kb on - strand at 727.362 kb on - strand at 727.496 kb on + strand, within Psyr_0638 at 727.497 kb on - strand, within Psyr_0638 at 727.809 kb on + strand, within Psyr_0638 at 727.834 kb on - strand, within Psyr_0638 at 727.982 kb on + strand at 728.180 kb on + strand, within Psyr_0639 at 728.180 kb on + strand, within Psyr_0639 at 728.180 kb on + strand, within Psyr_0639 at 728.181 kb on - strand, within Psyr_0639 at 728.181 kb on - strand, within Psyr_0639 at 728.181 kb on - strand, within Psyr_0639 at 728.206 kb on + strand, within Psyr_0639 at 728.206 kb on + strand, within Psyr_0639 at 728.206 kb on - strand, within Psyr_0639 at 728.207 kb on - strand, within Psyr_0639 at 728.207 kb on - strand, within Psyr_0639 at 728.284 kb on + strand, within Psyr_0639 at 728.284 kb on + strand, within Psyr_0639 at 728.285 kb on - strand, within Psyr_0639 at 728.591 kb on + strand at 728.636 kb on - strand at 728.789 kb on - strand, within Psyr_0640 at 728.789 kb on - strand, within Psyr_0640 at 728.845 kb on + strand, within Psyr_0640 at 728.872 kb on + strand, within Psyr_0640 at 728.873 kb on - strand, within Psyr_0640 at 728.875 kb on + strand, within Psyr_0640 at 728.884 kb on + strand, within Psyr_0640 at 728.884 kb on + strand, within Psyr_0640 at 728.885 kb on - strand, within Psyr_0640 at 728.938 kb on + strand, within Psyr_0640 at 728.938 kb on + strand, within Psyr_0640 at 728.938 kb on + strand, within Psyr_0640 at 728.939 kb on - strand, within Psyr_0640 at 728.939 kb on - strand, within Psyr_0640 at 728.939 kb on - strand, within Psyr_0640 at 729.178 kb on + strand, within Psyr_0640 at 729.178 kb on + strand, within Psyr_0640 at 729.179 kb on - strand, within Psyr_0640 at 729.182 kb on + strand, within Psyr_0640 at 729.240 kb on + strand at 729.240 kb on + strand at 729.240 kb on + strand at 729.240 kb on + strand at 729.241 kb on - strand at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.419 kb on - strand, within Psyr_0641 at 729.597 kb on - strand, within Psyr_0641 at 729.597 kb on - strand, within Psyr_0641
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 727,131 - Psyr_0637 0.70 +0.4 727,345 + -1.3 727,346 - +1.8 727,362 - -1.4 727,496 + Psyr_0638 0.23 -0.2 727,497 - Psyr_0638 0.23 +1.4 727,809 + Psyr_0638 0.76 -0.6 727,834 - Psyr_0638 0.80 +2.3 727,982 + +1.0 728,180 + Psyr_0639 0.25 +1.5 728,180 + Psyr_0639 0.25 +1.5 728,180 + Psyr_0639 0.25 +0.9 728,181 - Psyr_0639 0.25 -0.4 728,181 - Psyr_0639 0.25 +0.9 728,181 - Psyr_0639 0.25 +0.5 728,206 + Psyr_0639 0.30 +0.0 728,206 + Psyr_0639 0.30 +0.9 728,206 - Psyr_0639 0.30 -0.3 728,207 - Psyr_0639 0.30 +0.9 728,207 - Psyr_0639 0.30 +0.5 728,284 + Psyr_0639 0.44 -0.0 728,284 + Psyr_0639 0.44 -0.7 728,285 - Psyr_0639 0.44 +1.2 728,591 + +1.0 728,636 - -0.3 728,789 - Psyr_0640 0.26 +0.0 728,789 - Psyr_0640 0.26 +0.6 728,845 + Psyr_0640 0.35 +1.0 728,872 + Psyr_0640 0.39 +0.0 728,873 - Psyr_0640 0.39 -1.2 728,875 + Psyr_0640 0.40 +0.5 728,884 + Psyr_0640 0.41 +1.6 728,884 + Psyr_0640 0.41 +0.3 728,885 - Psyr_0640 0.41 -0.2 728,938 + Psyr_0640 0.49 -1.1 728,938 + Psyr_0640 0.49 +0.3 728,938 + Psyr_0640 0.49 +1.2 728,939 - Psyr_0640 0.50 -0.7 728,939 - Psyr_0640 0.50 +0.8 728,939 - Psyr_0640 0.50 -0.5 729,178 + Psyr_0640 0.87 +0.5 729,178 + Psyr_0640 0.87 +0.0 729,179 - Psyr_0640 0.87 -1.3 729,182 + Psyr_0640 0.88 +0.6 729,240 + +0.3 729,240 + +1.2 729,240 + +0.1 729,240 + +1.6 729,241 - +0.8 729,407 + Psyr_0641 0.17 -1.3 729,407 + Psyr_0641 0.17 +0.8 729,407 + Psyr_0641 0.17 -0.1 729,407 + Psyr_0641 0.17 -0.9 729,407 + Psyr_0641 0.17 +0.0 729,407 + Psyr_0641 0.17 +0.2 729,407 + Psyr_0641 0.17 -0.4 729,407 + Psyr_0641 0.17 +0.5 729,407 + Psyr_0641 0.17 +0.0 729,407 + Psyr_0641 0.17 -0.7 729,407 + Psyr_0641 0.17 +0.5 729,407 + Psyr_0641 0.17 +1.5 729,407 + Psyr_0641 0.17 -0.1 729,408 - Psyr_0641 0.17 -1.0 729,408 - Psyr_0641 0.17 -2.6 729,408 - Psyr_0641 0.17 +2.6 729,408 - Psyr_0641 0.17 +0.4 729,408 - Psyr_0641 0.17 -1.0 729,408 - Psyr_0641 0.17 +0.2 729,408 - Psyr_0641 0.17 -1.0 729,419 - Psyr_0641 0.19 +0.3 729,597 - Psyr_0641 0.42 -1.1 729,597 - Psyr_0641 0.42 -1.3
Or see this region's nucleotide sequence