Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0635

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0634 and Psyr_0635 are separated by 140 nucleotidesPsyr_0635 and Psyr_0636 are separated by 203 nucleotidesPsyr_0636 and Psyr_0637 overlap by 4 nucleotides Psyr_0634: Psyr_0634 - MORN motif protein, at 723,745 to 725,472 _0634 Psyr_0635: Psyr_0635 - MaoC-like dehydratase, at 725,613 to 726,068 _0635 Psyr_0636: Psyr_0636 - LrgA, at 726,272 to 726,634 _0636 Psyr_0637: Psyr_0637 - LrgB-like protein, at 726,631 to 727,347 _0637 Position (kb) 725 726 727Strain fitness (log2 ratio) -2 -1 0 1 2at 724.655 kb on + strand, within Psyr_0634at 724.655 kb on + strand, within Psyr_0634at 724.656 kb on - strand, within Psyr_0634at 724.656 kb on - strand, within Psyr_0634at 724.656 kb on - strand, within Psyr_0634at 724.683 kb on - strand, within Psyr_0634at 724.889 kb on + strand, within Psyr_0634at 724.889 kb on + strand, within Psyr_0634at 724.889 kb on + strand, within Psyr_0634at 724.889 kb on + strand, within Psyr_0634at 724.890 kb on - strand, within Psyr_0634at 724.890 kb on - strand, within Psyr_0634at 724.958 kb on + strand, within Psyr_0634at 724.958 kb on + strand, within Psyr_0634at 724.958 kb on + strand, within Psyr_0634at 724.959 kb on - strand, within Psyr_0634at 724.959 kb on - strand, within Psyr_0634at 725.069 kb on + strand, within Psyr_0634at 725.069 kb on + strand, within Psyr_0634at 725.069 kb on + strand, within Psyr_0634at 725.069 kb on + strand, within Psyr_0634at 725.070 kb on - strand, within Psyr_0634at 725.070 kb on - strand, within Psyr_0634at 725.070 kb on - strand, within Psyr_0634at 725.071 kb on + strand, within Psyr_0634at 725.071 kb on + strand, within Psyr_0634at 725.071 kb on + strand, within Psyr_0634at 725.071 kb on + strand, within Psyr_0634at 725.072 kb on - strand, within Psyr_0634at 725.072 kb on - strand, within Psyr_0634at 725.072 kb on - strand, within Psyr_0634at 725.072 kb on - strand, within Psyr_0634at 725.072 kb on - strand, within Psyr_0634at 725.072 kb on - strand, within Psyr_0634at 725.162 kb on + strand, within Psyr_0634at 725.162 kb on + strand, within Psyr_0634at 725.162 kb on + strand, within Psyr_0634at 725.162 kb on + strand, within Psyr_0634at 725.163 kb on - strand, within Psyr_0634at 725.163 kb on - strand, within Psyr_0634at 725.163 kb on - strand, within Psyr_0634at 725.163 kb on - strand, within Psyr_0634at 725.231 kb on + strand, within Psyr_0634at 725.232 kb on - strand, within Psyr_0634at 725.529 kb on - strandat 725.551 kb on + strandat 725.552 kb on - strandat 725.552 kb on - strandat 725.552 kb on - strandat 725.552 kb on - strandat 725.614 kb on + strandat 725.615 kb on - strandat 725.616 kb on + strandat 725.616 kb on + strandat 725.617 kb on - strandat 725.632 kb on - strandat 725.803 kb on + strand, within Psyr_0635at 725.803 kb on + strand, within Psyr_0635at 725.835 kb on + strand, within Psyr_0635at 725.836 kb on - strand, within Psyr_0635at 725.836 kb on - strand, within Psyr_0635at 725.981 kb on + strand, within Psyr_0635at 726.034 kb on + strandat 726.034 kb on + strandat 726.034 kb on + strandat 726.035 kb on - strandat 726.035 kb on - strandat 726.035 kb on - strandat 726.035 kb on - strandat 726.035 kb on - strandat 726.068 kb on + strandat 726.068 kb on + strandat 726.068 kb on + strandat 726.068 kb on + strandat 726.068 kb on + strandat 726.069 kb on - strandat 726.069 kb on - strandat 726.069 kb on - strandat 726.095 kb on + strandat 726.095 kb on + strandat 726.096 kb on - strandat 726.096 kb on - strandat 726.096 kb on - strandat 726.096 kb on - strandat 726.223 kb on + strandat 726.223 kb on + strandat 726.223 kb on + strandat 726.224 kb on - strandat 726.224 kb on - strandat 726.224 kb on - strandat 726.224 kb on - strandat 726.224 kb on - strandat 726.224 kb on - strandat 726.225 kb on + strandat 726.225 kb on + strandat 726.225 kb on + strandat 726.226 kb on - strandat 726.226 kb on - strandat 726.226 kb on - strandat 726.255 kb on + strandat 726.255 kb on + strandat 726.255 kb on + strandat 726.383 kb on - strand, within Psyr_0636at 726.383 kb on - strand, within Psyr_0636at 726.389 kb on + strand, within Psyr_0636at 726.389 kb on + strand, within Psyr_0636at 726.389 kb on + strand, within Psyr_0636at 726.389 kb on + strand, within Psyr_0636at 726.389 kb on + strand, within Psyr_0636at 726.389 kb on + strand, within Psyr_0636at 726.390 kb on - strand, within Psyr_0636at 726.390 kb on - strand, within Psyr_0636at 726.498 kb on - strand, within Psyr_0636at 726.498 kb on - strand, within Psyr_0636at 726.498 kb on - strandat 726.498 kb on - strand, within Psyr_0636at 726.710 kb on - strand, within Psyr_0637at 726.817 kb on + strand, within Psyr_0637at 726.817 kb on + strand, within Psyr_0637at 726.817 kb on + strand, within Psyr_0637at 726.817 kb on + strand, within Psyr_0637at 726.817 kb on + strand, within Psyr_0637at 726.895 kb on + strand, within Psyr_0637at 726.896 kb on - strand, within Psyr_0637at 726.903 kb on + strand, within Psyr_0637at 726.903 kb on + strand, within Psyr_0637

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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724,655 + Psyr_0634 0.53 -0.5
724,655 + Psyr_0634 0.53 +0.5
724,656 - Psyr_0634 0.53 +2.6
724,656 - Psyr_0634 0.53 +1.5
724,656 - Psyr_0634 0.53 +0.8
724,683 - Psyr_0634 0.54 -0.4
724,889 + Psyr_0634 0.66 +0.0
724,889 + Psyr_0634 0.66 +0.4
724,889 + Psyr_0634 0.66 -0.1
724,889 + Psyr_0634 0.66 -2.4
724,890 - Psyr_0634 0.66 +0.6
724,890 - Psyr_0634 0.66 +0.5
724,958 + Psyr_0634 0.70 -1.0
724,958 + Psyr_0634 0.70 -0.2
724,958 + Psyr_0634 0.70 +0.9
724,959 - Psyr_0634 0.70 +1.5
724,959 - Psyr_0634 0.70 +0.5
725,069 + Psyr_0634 0.77 -0.7
725,069 + Psyr_0634 0.77 -0.5
725,069 + Psyr_0634 0.77 +0.6
725,069 + Psyr_0634 0.77 -0.8
725,070 - Psyr_0634 0.77 +0.3
725,070 - Psyr_0634 0.77 -0.6
725,070 - Psyr_0634 0.77 -0.7
725,071 + Psyr_0634 0.77 +0.4
725,071 + Psyr_0634 0.77 -0.9
725,071 + Psyr_0634 0.77 +0.9
725,071 + Psyr_0634 0.77 +0.0
725,072 - Psyr_0634 0.77 -2.1
725,072 - Psyr_0634 0.77 -0.2
725,072 - Psyr_0634 0.77 -0.5
725,072 - Psyr_0634 0.77 +0.1
725,072 - Psyr_0634 0.77 +1.2
725,072 - Psyr_0634 0.77 -0.6
725,162 + Psyr_0634 0.82 +0.5
725,162 + Psyr_0634 0.82 -0.1
725,162 + Psyr_0634 0.82 +1.4
725,162 + Psyr_0634 0.82 +1.0
725,163 - Psyr_0634 0.82 -0.7
725,163 - Psyr_0634 0.82 -1.3
725,163 - Psyr_0634 0.82 -0.4
725,163 - Psyr_0634 0.82 -1.2
725,231 + Psyr_0634 0.86 -0.8
725,232 - Psyr_0634 0.86 +0.2
725,529 - +0.7
725,551 + +0.6
725,552 - -0.4
725,552 - -0.1
725,552 - -0.7
725,552 - -1.4
725,614 + -0.2
725,615 - -0.3
725,616 + -0.7
725,616 + +1.3
725,617 - +0.3
725,632 - -0.4
725,803 + Psyr_0635 0.42 -1.3
725,803 + Psyr_0635 0.42 +1.6
725,835 + Psyr_0635 0.49 -0.9
725,836 - Psyr_0635 0.49 -0.7
725,836 - Psyr_0635 0.49 +1.0
725,981 + Psyr_0635 0.81 -1.0
726,034 + +0.0
726,034 + +2.6
726,034 + +0.2
726,035 - -1.2
726,035 - +0.9
726,035 - +1.4
726,035 - -1.2
726,035 - -0.1
726,068 + +1.8
726,068 + +0.0
726,068 + +0.6
726,068 + +0.0
726,068 + +1.0
726,069 - +0.0
726,069 - +0.6
726,069 - +0.1
726,095 + -0.1
726,095 + -2.5
726,096 - +1.0
726,096 - -2.2
726,096 - -1.0
726,096 - +0.5
726,223 + +1.3
726,223 + -1.0
726,223 + +0.8
726,224 - +1.5
726,224 - +0.0
726,224 - -1.3
726,224 - -1.0
726,224 - +0.2
726,224 - +1.1
726,225 + -0.4
726,225 + -1.1
726,225 + -1.5
726,226 - -0.2
726,226 - +0.0
726,226 - -0.4
726,255 + +0.6
726,255 + -1.6
726,255 + +0.1
726,383 - Psyr_0636 0.31 +0.4
726,383 - Psyr_0636 0.31 +1.3
726,389 + Psyr_0636 0.32 +0.2
726,389 + Psyr_0636 0.32 -0.5
726,389 + Psyr_0636 0.32 +0.7
726,389 + Psyr_0636 0.32 +0.3
726,389 + Psyr_0636 0.32 +0.8
726,389 + Psyr_0636 0.32 +0.6
726,390 - Psyr_0636 0.33 +0.1
726,390 - Psyr_0636 0.33 -0.5
726,498 - Psyr_0636 0.62 +0.1
726,498 - Psyr_0636 0.62 +0.6
726,498 - +1.6
726,498 - Psyr_0636 0.62 -0.5
726,710 - Psyr_0637 0.11 +0.3
726,817 + Psyr_0637 0.26 +0.2
726,817 + Psyr_0637 0.26 -0.5
726,817 + Psyr_0637 0.26 +0.3
726,817 + Psyr_0637 0.26 -0.7
726,817 + Psyr_0637 0.26 +2.0
726,895 + Psyr_0637 0.37 +0.2
726,896 - Psyr_0637 0.37 -0.2
726,903 + Psyr_0637 0.38 +0.0
726,903 + Psyr_0637 0.38 +0.2

Or see this region's nucleotide sequence