Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0621

Experiment: KB with capsaicin 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0620 and Psyr_0621 overlap by 1 nucleotidesPsyr_0621 and Psyr_0622 are separated by 93 nucleotidesPsyr_0622 and Psyr_0623 are separated by 410 nucleotides Psyr_0620: Psyr_0620 - Outer membrane autotransporter barrel, at 708,816 to 711,095 _0620 Psyr_0621: Psyr_0621 - conserved hypothetical protein, at 711,095 to 711,946 _0621 Psyr_0622: Psyr_0622 - transcriptional regulator, XRE family, at 712,040 to 712,282 _0622 Psyr_0623: Psyr_0623 - Peptidase S24, S26A and S26B, at 712,693 to 713,424 _0623 Position (kb) 711 712Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 710.202 kb on - strand, within Psyr_0620at 710.230 kb on + strand, within Psyr_0620at 710.230 kb on + strand, within Psyr_0620at 710.230 kb on + strand, within Psyr_0620at 710.230 kb on + strand, within Psyr_0620at 710.230 kb on + strand, within Psyr_0620at 710.231 kb on - strand, within Psyr_0620at 710.231 kb on - strand, within Psyr_0620at 710.231 kb on - strand, within Psyr_0620at 710.231 kb on - strand, within Psyr_0620at 710.313 kb on + strand, within Psyr_0620at 710.313 kb on + strand, within Psyr_0620at 710.355 kb on + strand, within Psyr_0620at 710.355 kb on + strand, within Psyr_0620at 710.356 kb on - strandat 710.358 kb on - strand, within Psyr_0620at 710.364 kb on + strand, within Psyr_0620at 710.365 kb on - strand, within Psyr_0620at 710.505 kb on + strand, within Psyr_0620at 710.505 kb on + strand, within Psyr_0620at 710.505 kb on + strand, within Psyr_0620at 710.505 kb on + strand, within Psyr_0620at 710.505 kb on + strand, within Psyr_0620at 710.505 kb on + strand, within Psyr_0620at 710.506 kb on - strand, within Psyr_0620at 710.506 kb on - strand, within Psyr_0620at 710.506 kb on - strand, within Psyr_0620at 710.506 kb on - strand, within Psyr_0620at 710.506 kb on - strand, within Psyr_0620at 710.529 kb on + strand, within Psyr_0620at 710.529 kb on + strand, within Psyr_0620at 710.530 kb on - strand, within Psyr_0620at 710.530 kb on - strand, within Psyr_0620at 710.554 kb on - strand, within Psyr_0620at 710.652 kb on + strand, within Psyr_0620at 710.658 kb on + strand, within Psyr_0620at 710.658 kb on + strand, within Psyr_0620at 710.658 kb on + strand, within Psyr_0620at 710.659 kb on - strand, within Psyr_0620at 710.659 kb on - strand, within Psyr_0620at 710.659 kb on - strand, within Psyr_0620at 710.659 kb on - strand, within Psyr_0620at 710.659 kb on - strand, within Psyr_0620at 710.659 kb on - strand, within Psyr_0620at 710.659 kb on - strand, within Psyr_0620at 710.721 kb on - strand, within Psyr_0620at 710.871 kb on + strandat 710.871 kb on + strandat 710.872 kb on - strandat 710.872 kb on - strandat 710.928 kb on - strandat 710.928 kb on - strandat 710.939 kb on - strandat 710.970 kb on + strandat 710.994 kb on + strandat 710.995 kb on - strandat 711.011 kb on + strandat 711.011 kb on + strandat 711.011 kb on + strandat 711.012 kb on - strandat 711.012 kb on - strandat 711.012 kb on - strandat 711.012 kb on - strandat 711.027 kb on + strandat 711.027 kb on + strandat 711.027 kb on + strandat 711.027 kb on + strandat 711.028 kb on - strandat 711.028 kb on - strandat 711.033 kb on + strandat 711.033 kb on + strandat 711.033 kb on + strandat 711.033 kb on + strandat 711.033 kb on + strandat 711.034 kb on - strandat 711.034 kb on - strandat 711.034 kb on - strandat 711.204 kb on + strand, within Psyr_0621at 711.204 kb on + strand, within Psyr_0621at 711.204 kb on + strand, within Psyr_0621at 711.204 kb on + strand, within Psyr_0621at 711.205 kb on - strand, within Psyr_0621at 711.205 kb on - strand, within Psyr_0621at 711.276 kb on + strand, within Psyr_0621at 711.276 kb on + strand, within Psyr_0621at 711.317 kb on + strand, within Psyr_0621at 711.318 kb on - strand, within Psyr_0621at 711.382 kb on + strand, within Psyr_0621at 711.382 kb on + strand, within Psyr_0621at 711.382 kb on + strand, within Psyr_0621at 711.382 kb on + strand, within Psyr_0621at 711.383 kb on - strand, within Psyr_0621at 711.383 kb on - strand, within Psyr_0621at 711.383 kb on - strand, within Psyr_0621at 711.383 kb on - strand, within Psyr_0621at 711.545 kb on - strand, within Psyr_0621at 711.545 kb on - strand, within Psyr_0621at 711.545 kb on - strand, within Psyr_0621at 711.545 kb on - strand, within Psyr_0621at 711.558 kb on - strand, within Psyr_0621at 711.562 kb on + strand, within Psyr_0621at 711.566 kb on - strand, within Psyr_0621at 711.693 kb on + strand, within Psyr_0621at 711.693 kb on + strand, within Psyr_0621at 711.694 kb on - strand, within Psyr_0621at 711.694 kb on - strand, within Psyr_0621at 711.694 kb on - strand, within Psyr_0621at 711.694 kb on - strand, within Psyr_0621at 711.738 kb on - strand, within Psyr_0621at 711.738 kb on - strand, within Psyr_0621at 711.759 kb on + strand, within Psyr_0621at 711.760 kb on - strand, within Psyr_0621at 711.862 kb on + strandat 711.863 kb on - strandat 711.930 kb on + strandat 711.930 kb on + strandat 711.930 kb on + strandat 711.930 kb on + strandat 711.931 kb on - strandat 711.931 kb on - strandat 711.931 kb on - strandat 711.931 kb on - strandat 711.931 kb on - strandat 711.931 kb on - strandat 711.931 kb on - strandat 711.955 kb on + strandat 711.956 kb on - strandat 711.956 kb on - strandat 711.988 kb on - strandat 712.001 kb on + strandat 712.081 kb on - strand, within Psyr_0622at 712.182 kb on - strand, within Psyr_0622at 712.193 kb on + strand, within Psyr_0622at 712.194 kb on - strand, within Psyr_0622at 712.310 kb on + strandat 712.310 kb on + strandat 712.311 kb on - strandat 712.314 kb on + strandat 712.315 kb on - strandat 712.318 kb on + strandat 712.318 kb on + strandat 712.318 kb on + strandat 712.419 kb on - strandat 712.457 kb on - strandat 712.500 kb on + strandat 712.500 kb on + strandat 712.556 kb on + strandat 712.557 kb on - strandat 712.696 kb on + strandat 712.901 kb on + strand, within Psyr_0623at 712.901 kb on + strand, within Psyr_0623at 712.901 kb on + strand, within Psyr_0623at 712.901 kb on + strand, within Psyr_0623at 712.901 kb on + strand, within Psyr_0623

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
remove
710,202 - Psyr_0620 0.61 -1.5
710,230 + Psyr_0620 0.62 +1.4
710,230 + Psyr_0620 0.62 +1.1
710,230 + Psyr_0620 0.62 -0.2
710,230 + Psyr_0620 0.62 -1.5
710,230 + Psyr_0620 0.62 +0.5
710,231 - Psyr_0620 0.62 -0.2
710,231 - Psyr_0620 0.62 +0.5
710,231 - Psyr_0620 0.62 +0.8
710,231 - Psyr_0620 0.62 +0.8
710,313 + Psyr_0620 0.66 -1.3
710,313 + Psyr_0620 0.66 -0.1
710,355 + Psyr_0620 0.68 +0.5
710,355 + Psyr_0620 0.68 -0.1
710,356 - +0.1
710,358 - Psyr_0620 0.68 +1.9
710,364 + Psyr_0620 0.68 -0.7
710,365 - Psyr_0620 0.68 -0.2
710,505 + Psyr_0620 0.74 -0.2
710,505 + Psyr_0620 0.74 +0.4
710,505 + Psyr_0620 0.74 +1.8
710,505 + Psyr_0620 0.74 -0.2
710,505 + Psyr_0620 0.74 -0.7
710,505 + Psyr_0620 0.74 -1.2
710,506 - Psyr_0620 0.74 +0.5
710,506 - Psyr_0620 0.74 +0.2
710,506 - Psyr_0620 0.74 -1.0
710,506 - Psyr_0620 0.74 +0.1
710,506 - Psyr_0620 0.74 +0.4
710,529 + Psyr_0620 0.75 -1.3
710,529 + Psyr_0620 0.75 +3.4
710,530 - Psyr_0620 0.75 -0.6
710,530 - Psyr_0620 0.75 -0.3
710,554 - Psyr_0620 0.76 +0.2
710,652 + Psyr_0620 0.81 -1.4
710,658 + Psyr_0620 0.81 -0.2
710,658 + Psyr_0620 0.81 +0.1
710,658 + Psyr_0620 0.81 +0.5
710,659 - Psyr_0620 0.81 -0.5
710,659 - Psyr_0620 0.81 -0.4
710,659 - Psyr_0620 0.81 +0.6
710,659 - Psyr_0620 0.81 +0.1
710,659 - Psyr_0620 0.81 -0.0
710,659 - Psyr_0620 0.81 -0.1
710,659 - Psyr_0620 0.81 +0.6
710,721 - Psyr_0620 0.84 +1.6
710,871 + -1.7
710,871 + -0.8
710,872 - -0.0
710,872 - -0.5
710,928 - -1.0
710,928 - +0.2
710,939 - -0.1
710,970 + -0.3
710,994 + +0.2
710,995 - -0.5
711,011 + -1.0
711,011 + +1.1
711,011 + -0.8
711,012 - +0.8
711,012 - +1.3
711,012 - -0.0
711,012 - +3.6
711,027 + +0.5
711,027 + -0.5
711,027 + -1.1
711,027 + +1.3
711,028 - +0.1
711,028 - +0.4
711,033 + +0.7
711,033 + +0.9
711,033 + -0.9
711,033 + -0.4
711,033 + +0.3
711,034 - +0.2
711,034 - +0.6
711,034 - -1.8
711,204 + Psyr_0621 0.13 -0.3
711,204 + Psyr_0621 0.13 +0.5
711,204 + Psyr_0621 0.13 -0.1
711,204 + Psyr_0621 0.13 -0.2
711,205 - Psyr_0621 0.13 -1.8
711,205 - Psyr_0621 0.13 +1.5
711,276 + Psyr_0621 0.21 -0.4
711,276 + Psyr_0621 0.21 +0.9
711,317 + Psyr_0621 0.26 -1.9
711,318 - Psyr_0621 0.26 -0.1
711,382 + Psyr_0621 0.34 -0.1
711,382 + Psyr_0621 0.34 -0.5
711,382 + Psyr_0621 0.34 -0.3
711,382 + Psyr_0621 0.34 +0.0
711,383 - Psyr_0621 0.34 -0.3
711,383 - Psyr_0621 0.34 +0.4
711,383 - Psyr_0621 0.34 -0.2
711,383 - Psyr_0621 0.34 +0.5
711,545 - Psyr_0621 0.53 -0.9
711,545 - Psyr_0621 0.53 +0.5
711,545 - Psyr_0621 0.53 -1.1
711,545 - Psyr_0621 0.53 -1.5
711,558 - Psyr_0621 0.54 +0.9
711,562 + Psyr_0621 0.55 -0.2
711,566 - Psyr_0621 0.55 +3.1
711,693 + Psyr_0621 0.70 +0.1
711,693 + Psyr_0621 0.70 +0.6
711,694 - Psyr_0621 0.70 -1.6
711,694 - Psyr_0621 0.70 -0.9
711,694 - Psyr_0621 0.70 +1.6
711,694 - Psyr_0621 0.70 -0.8
711,738 - Psyr_0621 0.75 -0.8
711,738 - Psyr_0621 0.75 -2.8
711,759 + Psyr_0621 0.78 +1.4
711,760 - Psyr_0621 0.78 -0.2
711,862 + +1.4
711,863 - +0.9
711,930 + -0.0
711,930 + +0.5
711,930 + +0.8
711,930 + +0.7
711,931 - +0.1
711,931 - -0.6
711,931 - +0.3
711,931 - -1.5
711,931 - -0.9
711,931 - +0.1
711,931 - +0.6
711,955 + +0.2
711,956 - +0.3
711,956 - -0.9
711,988 - -0.0
712,001 + +0.6
712,081 - Psyr_0622 0.17 +0.5
712,182 - Psyr_0622 0.58 +1.1
712,193 + Psyr_0622 0.63 +1.9
712,194 - Psyr_0622 0.63 -0.1
712,310 + -0.3
712,310 + -0.8
712,311 - -0.3
712,314 + +0.2
712,315 - -0.8
712,318 + +0.3
712,318 + +0.1
712,318 + +1.5
712,419 - -0.9
712,457 - -0.4
712,500 + -1.5
712,500 + -2.3
712,556 + -1.1
712,557 - -0.6
712,696 + +0.1
712,901 + Psyr_0623 0.28 +0.5
712,901 + Psyr_0623 0.28 -0.9
712,901 + Psyr_0623 0.28 +0.5
712,901 + Psyr_0623 0.28 -0.9
712,901 + Psyr_0623 0.28 +0.3

Or see this region's nucleotide sequence