Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0618

Experiment: KB with capsaicin 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0617 and Psyr_0618 overlap by 4 nucleotidesPsyr_0618 and Psyr_0619 are separated by 54 nucleotides Psyr_0617: Psyr_0617 - conserved hypothetical protein, at 705,149 to 706,924 _0617 Psyr_0618: Psyr_0618 - conserved hypothetical protein, at 706,921 to 707,526 _0618 Psyr_0619: Psyr_0619 - WavE lipopolysaccharide synthesis, at 707,581 to 708,624 _0619 Position (kb) 706 707 708Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 706.100 kb on + strand, within Psyr_0617at 706.100 kb on + strand, within Psyr_0617at 706.101 kb on - strand, within Psyr_0617at 706.136 kb on + strand, within Psyr_0617at 706.137 kb on - strand, within Psyr_0617at 706.137 kb on - strand, within Psyr_0617at 706.137 kb on - strand, within Psyr_0617at 706.200 kb on - strand, within Psyr_0617at 706.200 kb on - strand, within Psyr_0617at 706.200 kb on - strand, within Psyr_0617at 706.221 kb on + strand, within Psyr_0617at 706.222 kb on - strand, within Psyr_0617at 706.240 kb on + strand, within Psyr_0617at 706.240 kb on + strand, within Psyr_0617at 706.241 kb on - strand, within Psyr_0617at 706.241 kb on - strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.359 kb on + strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.442 kb on + strand, within Psyr_0617at 706.442 kb on + strand, within Psyr_0617at 706.442 kb on + strand, within Psyr_0617at 706.442 kb on + strand, within Psyr_0617at 706.442 kb on + strand, within Psyr_0617at 706.442 kb on + strand, within Psyr_0617at 706.443 kb on - strand, within Psyr_0617at 706.443 kb on - strand, within Psyr_0617at 706.443 kb on - strand, within Psyr_0617at 706.443 kb on - strand, within Psyr_0617at 706.443 kb on - strand, within Psyr_0617at 706.443 kb on - strand, within Psyr_0617at 706.711 kb on + strand, within Psyr_0617at 706.711 kb on + strand, within Psyr_0617at 706.711 kb on + strand, within Psyr_0617at 706.711 kb on + strand, within Psyr_0617at 706.711 kb on + strand, within Psyr_0617at 706.711 kb on + strand, within Psyr_0617at 706.711 kb on + strand, within Psyr_0617at 706.711 kb on + strand, within Psyr_0617at 706.712 kb on - strand, within Psyr_0617at 706.712 kb on - strand, within Psyr_0617at 706.712 kb on - strand, within Psyr_0617at 706.712 kb on - strand, within Psyr_0617at 706.712 kb on - strand, within Psyr_0617at 706.712 kb on - strand, within Psyr_0617at 706.712 kb on - strand, within Psyr_0617at 706.712 kb on - strand, within Psyr_0617at 706.730 kb on - strand, within Psyr_0617at 706.763 kb on + strandat 706.763 kb on + strandat 706.763 kb on + strandat 706.763 kb on + strandat 706.763 kb on + strandat 706.763 kb on + strandat 706.764 kb on - strandat 706.764 kb on - strandat 706.820 kb on + strandat 706.844 kb on + strandat 706.844 kb on + strandat 706.880 kb on + strandat 706.880 kb on + strandat 706.880 kb on + strandat 706.880 kb on + strandat 706.880 kb on + strandat 706.881 kb on - strandat 706.904 kb on + strandat 706.905 kb on - strandat 706.905 kb on - strandat 706.905 kb on - strandat 706.928 kb on + strandat 707.170 kb on - strand, within Psyr_0618at 707.221 kb on - strand, within Psyr_0618at 707.260 kb on + strand, within Psyr_0618at 707.260 kb on + strand, within Psyr_0618at 707.260 kb on + strand, within Psyr_0618at 707.260 kb on + strand, within Psyr_0618at 707.260 kb on + strand, within Psyr_0618at 707.260 kb on + strand, within Psyr_0618at 707.260 kb on + strand, within Psyr_0618at 707.260 kb on + strand, within Psyr_0618at 707.260 kb on + strand, within Psyr_0618at 707.261 kb on - strand, within Psyr_0618at 707.327 kb on - strand, within Psyr_0618at 707.441 kb on + strand, within Psyr_0618at 707.441 kb on + strand, within Psyr_0618at 707.441 kb on + strand, within Psyr_0618at 707.441 kb on + strand, within Psyr_0618at 707.442 kb on - strand, within Psyr_0618at 707.442 kb on - strand, within Psyr_0618at 707.442 kb on - strand, within Psyr_0618at 707.442 kb on - strand, within Psyr_0618at 707.442 kb on - strand, within Psyr_0618at 707.566 kb on + strandat 707.566 kb on + strandat 707.567 kb on - strandat 707.567 kb on - strandat 707.567 kb on - strandat 707.567 kb on - strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.581 kb on - strandat 707.581 kb on - strandat 707.581 kb on - strandat 707.581 kb on - strandat 707.581 kb on - strandat 707.581 kb on - strandat 707.581 kb on - strandat 707.667 kb on + strandat 707.667 kb on + strandat 707.668 kb on - strandat 707.668 kb on - strandat 707.668 kb on - strandat 707.745 kb on + strand, within Psyr_0619at 707.745 kb on + strand, within Psyr_0619at 707.745 kb on + strand, within Psyr_0619at 707.745 kb on + strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.881 kb on + strand, within Psyr_0619at 707.881 kb on + strand, within Psyr_0619at 707.881 kb on + strand, within Psyr_0619at 707.881 kb on + strand, within Psyr_0619at 707.881 kb on + strand, within Psyr_0619at 707.881 kb on + strand, within Psyr_0619at 707.881 kb on + strand, within Psyr_0619at 707.881 kb on + strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.936 kb on + strand, within Psyr_0619at 707.937 kb on - strand, within Psyr_0619at 707.995 kb on - strand, within Psyr_0619at 707.995 kb on - strand, within Psyr_0619at 707.995 kb on - strand, within Psyr_0619at 708.007 kb on + strand, within Psyr_0619at 708.007 kb on + strand, within Psyr_0619at 708.007 kb on + strandat 708.008 kb on - strand, within Psyr_0619at 708.008 kb on - strand, within Psyr_0619at 708.008 kb on - strand, within Psyr_0619at 708.008 kb on - strand, within Psyr_0619at 708.008 kb on - strand, within Psyr_0619at 708.008 kb on - strand, within Psyr_0619at 708.009 kb on + strand, within Psyr_0619at 708.009 kb on + strand, within Psyr_0619at 708.009 kb on + strand, within Psyr_0619at 708.009 kb on + strand, within Psyr_0619at 708.009 kb on + strand, within Psyr_0619at 708.009 kb on + strand, within Psyr_0619at 708.010 kb on - strand, within Psyr_0619at 708.010 kb on - strand, within Psyr_0619at 708.045 kb on + strand, within Psyr_0619at 708.045 kb on + strand, within Psyr_0619at 708.045 kb on + strand, within Psyr_0619at 708.045 kb on + strand, within Psyr_0619at 708.045 kb on + strand, within Psyr_0619at 708.045 kb on + strand, within Psyr_0619at 708.045 kb on + strand, within Psyr_0619at 708.045 kb on + strand, within Psyr_0619at 708.045 kb on + strand, within Psyr_0619at 708.045 kb on + strand, within Psyr_0619at 708.046 kb on - strand, within Psyr_0619at 708.046 kb on - strand, within Psyr_0619at 708.046 kb on - strand, within Psyr_0619at 708.046 kb on - strand, within Psyr_0619at 708.046 kb on - strand, within Psyr_0619at 708.046 kb on - strand, within Psyr_0619at 708.381 kb on - strand, within Psyr_0619at 708.394 kb on + strand, within Psyr_0619at 708.395 kb on - strand, within Psyr_0619

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
remove
706,100 + Psyr_0617 0.54 +0.6
706,100 + Psyr_0617 0.54 -0.5
706,101 - Psyr_0617 0.54 -1.4
706,136 + Psyr_0617 0.56 +1.0
706,137 - Psyr_0617 0.56 -0.5
706,137 - Psyr_0617 0.56 +1.8
706,137 - Psyr_0617 0.56 -1.3
706,200 - Psyr_0617 0.59 +0.6
706,200 - Psyr_0617 0.59 -1.9
706,200 - Psyr_0617 0.59 +0.1
706,221 + Psyr_0617 0.60 +1.3
706,222 - Psyr_0617 0.60 +0.7
706,240 + Psyr_0617 0.61 -0.5
706,240 + Psyr_0617 0.61 -0.9
706,241 - Psyr_0617 0.61 -0.4
706,241 - Psyr_0617 0.61 -0.2
706,358 + Psyr_0617 0.68 -1.5
706,358 + Psyr_0617 0.68 -1.7
706,358 + Psyr_0617 0.68 +0.4
706,358 + Psyr_0617 0.68 +0.1
706,358 + Psyr_0617 0.68 +0.2
706,358 + Psyr_0617 0.68 +2.1
706,358 + Psyr_0617 0.68 +0.7
706,358 + Psyr_0617 0.68 -1.1
706,358 + Psyr_0617 0.68 +1.2
706,358 + Psyr_0617 0.68 -0.5
706,358 + Psyr_0617 0.68 -1.5
706,358 + Psyr_0617 0.68 -0.5
706,358 + Psyr_0617 0.68 +0.0
706,359 + Psyr_0617 0.68 -0.1
706,359 - Psyr_0617 0.68 -3.0
706,359 - Psyr_0617 0.68 +2.8
706,359 - Psyr_0617 0.68 -0.0
706,359 - Psyr_0617 0.68 +0.4
706,359 - Psyr_0617 0.68 +0.0
706,359 - Psyr_0617 0.68 -0.2
706,359 - Psyr_0617 0.68 +1.8
706,359 - Psyr_0617 0.68 -0.1
706,359 - Psyr_0617 0.68 +0.3
706,359 - Psyr_0617 0.68 -0.3
706,359 - Psyr_0617 0.68 +0.1
706,359 - Psyr_0617 0.68 +0.6
706,359 - Psyr_0617 0.68 -0.2
706,359 - Psyr_0617 0.68 +0.4
706,359 - Psyr_0617 0.68 +0.3
706,359 - Psyr_0617 0.68 -0.1
706,359 - Psyr_0617 0.68 -0.1
706,359 - Psyr_0617 0.68 +1.1
706,359 - Psyr_0617 0.68 -0.7
706,359 - Psyr_0617 0.68 +0.3
706,442 + Psyr_0617 0.73 +1.1
706,442 + Psyr_0617 0.73 +0.9
706,442 + Psyr_0617 0.73 -0.5
706,442 + Psyr_0617 0.73 -0.7
706,442 + Psyr_0617 0.73 +0.8
706,442 + Psyr_0617 0.73 +0.8
706,443 - Psyr_0617 0.73 +0.2
706,443 - Psyr_0617 0.73 +1.5
706,443 - Psyr_0617 0.73 -0.6
706,443 - Psyr_0617 0.73 +0.7
706,443 - Psyr_0617 0.73 -2.1
706,443 - Psyr_0617 0.73 -1.3
706,711 + Psyr_0617 0.88 +1.3
706,711 + Psyr_0617 0.88 +0.0
706,711 + Psyr_0617 0.88 +0.4
706,711 + Psyr_0617 0.88 +0.4
706,711 + Psyr_0617 0.88 -1.0
706,711 + Psyr_0617 0.88 -0.2
706,711 + Psyr_0617 0.88 -1.5
706,711 + Psyr_0617 0.88 -0.2
706,712 - Psyr_0617 0.88 -1.2
706,712 - Psyr_0617 0.88 +0.6
706,712 - Psyr_0617 0.88 +1.1
706,712 - Psyr_0617 0.88 +1.1
706,712 - Psyr_0617 0.88 -1.1
706,712 - Psyr_0617 0.88 -0.4
706,712 - Psyr_0617 0.88 -0.9
706,712 - Psyr_0617 0.88 -0.0
706,730 - Psyr_0617 0.89 -0.2
706,763 + +0.5
706,763 + +0.3
706,763 + -0.0
706,763 + -0.1
706,763 + +0.7
706,763 + +0.1
706,764 - +0.4
706,764 - -0.9
706,820 + -0.4
706,844 + +1.1
706,844 + +0.2
706,880 + -0.2
706,880 + -1.0
706,880 + -1.3
706,880 + +2.4
706,880 + -0.8
706,881 - +0.2
706,904 + +0.1
706,905 - +1.2
706,905 - +0.1
706,905 - -0.2
706,928 + -0.7
707,170 - Psyr_0618 0.41 +1.2
707,221 - Psyr_0618 0.50 -0.4
707,260 + Psyr_0618 0.56 +0.8
707,260 + Psyr_0618 0.56 +2.1
707,260 + Psyr_0618 0.56 -0.7
707,260 + Psyr_0618 0.56 -0.7
707,260 + Psyr_0618 0.56 -0.9
707,260 + Psyr_0618 0.56 +0.2
707,260 + Psyr_0618 0.56 -0.3
707,260 + Psyr_0618 0.56 +0.6
707,260 + Psyr_0618 0.56 +0.3
707,261 - Psyr_0618 0.56 +0.6
707,327 - Psyr_0618 0.67 +0.8
707,441 + Psyr_0618 0.86 +1.1
707,441 + Psyr_0618 0.86 -0.4
707,441 + Psyr_0618 0.86 -0.0
707,441 + Psyr_0618 0.86 -0.4
707,442 - Psyr_0618 0.86 +0.8
707,442 - Psyr_0618 0.86 +1.1
707,442 - Psyr_0618 0.86 -0.3
707,442 - Psyr_0618 0.86 -0.5
707,442 - Psyr_0618 0.86 +2.1
707,566 + -0.5
707,566 + -0.6
707,567 - -0.9
707,567 - -1.8
707,567 - +0.3
707,567 - -0.3
707,580 + -0.4
707,580 + -0.8
707,580 + +0.4
707,580 + -0.2
707,580 + +0.1
707,580 + +0.9
707,580 + +1.3
707,580 + -1.0
707,580 + -1.5
707,580 + -0.6
707,580 + +2.1
707,580 + -0.0
707,580 + +0.4
707,580 + +0.1
707,580 + +0.8
707,581 - -0.4
707,581 - +1.1
707,581 - +0.1
707,581 - -0.1
707,581 - -0.6
707,581 - -1.8
707,581 - -0.1
707,667 + +0.5
707,667 + -0.3
707,668 - +0.5
707,668 - -0.4
707,668 - -0.6
707,745 + Psyr_0619 0.16 +0.6
707,745 + Psyr_0619 0.16 +1.4
707,745 + Psyr_0619 0.16 +0.5
707,745 + Psyr_0619 0.16 -0.3
707,746 - Psyr_0619 0.16 -2.4
707,746 - Psyr_0619 0.16 -1.3
707,746 - Psyr_0619 0.16 +0.3
707,746 - Psyr_0619 0.16 -0.1
707,746 - Psyr_0619 0.16 +1.1
707,746 - Psyr_0619 0.16 +0.1
707,746 - Psyr_0619 0.16 -0.2
707,746 - Psyr_0619 0.16 -0.8
707,881 + Psyr_0619 0.29 -0.5
707,881 + Psyr_0619 0.29 -1.6
707,881 + Psyr_0619 0.29 +0.3
707,881 + Psyr_0619 0.29 -0.2
707,881 + Psyr_0619 0.29 +0.2
707,881 + Psyr_0619 0.29 +2.1
707,881 + Psyr_0619 0.29 +0.6
707,881 + Psyr_0619 0.29 -0.4
707,882 - Psyr_0619 0.29 +0.9
707,882 - Psyr_0619 0.29 +2.9
707,882 - Psyr_0619 0.29 -0.9
707,882 - Psyr_0619 0.29 +0.5
707,882 - Psyr_0619 0.29 -0.0
707,882 - Psyr_0619 0.29 +1.1
707,882 - Psyr_0619 0.29 -0.2
707,882 - Psyr_0619 0.29 +1.4
707,882 - Psyr_0619 0.29 +0.5
707,882 - Psyr_0619 0.29 -1.4
707,882 - Psyr_0619 0.29 -0.4
707,882 - Psyr_0619 0.29 +1.4
707,936 + Psyr_0619 0.34 +0.2
707,937 - Psyr_0619 0.34 +0.2
707,995 - Psyr_0619 0.40 +1.9
707,995 - Psyr_0619 0.40 +0.6
707,995 - Psyr_0619 0.40 +0.8
708,007 + Psyr_0619 0.41 -0.3
708,007 + Psyr_0619 0.41 +0.0
708,007 + +1.1
708,008 - Psyr_0619 0.41 -1.0
708,008 - Psyr_0619 0.41 -0.1
708,008 - Psyr_0619 0.41 -0.1
708,008 - Psyr_0619 0.41 +0.1
708,008 - Psyr_0619 0.41 -0.2
708,008 - Psyr_0619 0.41 +0.6
708,009 + Psyr_0619 0.41 +0.7
708,009 + Psyr_0619 0.41 +0.5
708,009 + Psyr_0619 0.41 +0.2
708,009 + Psyr_0619 0.41 -0.3
708,009 + Psyr_0619 0.41 +0.4
708,009 + Psyr_0619 0.41 +0.2
708,010 - Psyr_0619 0.41 -0.3
708,010 - Psyr_0619 0.41 -0.8
708,045 + Psyr_0619 0.44 +0.4
708,045 + Psyr_0619 0.44 +0.1
708,045 + Psyr_0619 0.44 +0.1
708,045 + Psyr_0619 0.44 +0.7
708,045 + Psyr_0619 0.44 +0.7
708,045 + Psyr_0619 0.44 -0.5
708,045 + Psyr_0619 0.44 +1.1
708,045 + Psyr_0619 0.44 -0.8
708,045 + Psyr_0619 0.44 +0.1
708,045 + Psyr_0619 0.44 +0.6
708,046 - Psyr_0619 0.45 -1.3
708,046 - Psyr_0619 0.45 +0.3
708,046 - Psyr_0619 0.45 +0.2
708,046 - Psyr_0619 0.45 -0.5
708,046 - Psyr_0619 0.45 +1.6
708,046 - Psyr_0619 0.45 -0.9
708,381 - Psyr_0619 0.77 +0.4
708,394 + Psyr_0619 0.78 -0.6
708,395 - Psyr_0619 0.78 -0.6

Or see this region's nucleotide sequence