Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0580

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0579 and Psyr_0580 overlap by 4 nucleotidesPsyr_0580 and Psyr_0581 are separated by 257 nucleotidesPsyr_0581 and Psyr_0582 are separated by 28 nucleotidesPsyr_0582 and Psyr_0583 are separated by 39 nucleotides Psyr_0579: Psyr_0579 - RNAse R, at 659,938 to 662,571 _0579 Psyr_0580: Psyr_0580 - 23S rRNA Gm-2251 2'-O-methyltransferase, at 662,568 to 663,323 _0580 Psyr_0581: Psyr_0581 - SSU ribosomal protein S6P, at 663,581 to 664,006 _0581 Psyr_0582: Psyr_0582 - SSU ribosomal protein S18P, at 664,035 to 664,265 _0582 Psyr_0583: Psyr_0583 - membrane protein, putative, at 664,305 to 665,201 _0583 Position (kb) 662 663 664Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 661.579 kb on + strand, within Psyr_0579at 661.580 kb on - strand, within Psyr_0579at 661.628 kb on - strand, within Psyr_0579at 661.663 kb on + strand, within Psyr_0579at 661.672 kb on + strand, within Psyr_0579at 661.811 kb on - strand, within Psyr_0579at 661.895 kb on + strand, within Psyr_0579at 661.918 kb on + strand, within Psyr_0579at 661.918 kb on + strand, within Psyr_0579at 661.919 kb on - strand, within Psyr_0579at 661.919 kb on - strand, within Psyr_0579at 661.919 kb on - strand, within Psyr_0579at 661.968 kb on - strand, within Psyr_0579at 662.005 kb on + strand, within Psyr_0579at 662.005 kb on + strand, within Psyr_0579at 662.005 kb on + strand, within Psyr_0579at 662.005 kb on + strand, within Psyr_0579at 662.005 kb on + strand, within Psyr_0579at 662.005 kb on + strand, within Psyr_0579at 662.005 kb on + strand, within Psyr_0579at 662.005 kb on + strand, within Psyr_0579at 662.005 kb on + strand, within Psyr_0579at 662.005 kb on + strand, within Psyr_0579at 662.005 kb on + strand, within Psyr_0579at 662.006 kb on - strand, within Psyr_0579at 662.006 kb on - strand, within Psyr_0579at 662.006 kb on - strand, within Psyr_0579at 662.006 kb on - strand, within Psyr_0579at 662.006 kb on - strand, within Psyr_0579at 662.006 kb on - strand, within Psyr_0579at 662.006 kb on - strand, within Psyr_0579at 662.006 kb on - strand, within Psyr_0579at 662.006 kb on - strand, within Psyr_0579at 662.006 kb on - strand, within Psyr_0579at 662.006 kb on - strand, within Psyr_0579at 662.006 kb on - strand, within Psyr_0579at 662.006 kb on - strand, within Psyr_0579at 662.006 kb on - strand, within Psyr_0579at 662.006 kb on - strand, within Psyr_0579at 662.047 kb on + strand, within Psyr_0579at 662.048 kb on - strand, within Psyr_0579at 662.051 kb on - strand, within Psyr_0579at 662.227 kb on - strand, within Psyr_0579at 662.421 kb on + strandat 662.422 kb on - strandat 662.550 kb on + strandat 662.605 kb on + strandat 662.605 kb on + strandat 662.606 kb on - strandat 662.614 kb on + strandat 662.614 kb on + strandat 662.614 kb on + strandat 662.615 kb on - strandat 662.915 kb on + strand, within Psyr_0580at 662.915 kb on + strand, within Psyr_0580at 663.051 kb on - strand, within Psyr_0580at 663.121 kb on - strand, within Psyr_0580at 663.152 kb on + strand, within Psyr_0580at 663.207 kb on + strand, within Psyr_0580at 663.208 kb on - strand, within Psyr_0580at 663.321 kb on + strandat 663.324 kb on + strandat 663.324 kb on + strandat 663.324 kb on + strandat 663.324 kb on + strandat 663.352 kb on + strandat 663.352 kb on + strandat 663.352 kb on + strandat 663.352 kb on + strandat 663.352 kb on + strandat 663.352 kb on + strandat 663.353 kb on - strandat 663.353 kb on - strandat 663.353 kb on - strandat 663.353 kb on - strandat 663.359 kb on + strandat 663.359 kb on + strandat 663.359 kb on + strandat 663.359 kb on + strandat 663.360 kb on - strandat 663.360 kb on - strandat 663.360 kb on - strandat 663.360 kb on - strandat 663.360 kb on - strandat 663.360 kb on - strandat 663.360 kb on - strandat 663.376 kb on + strandat 663.376 kb on + strandat 663.377 kb on - strandat 663.377 kb on - strandat 663.377 kb on - strandat 663.377 kb on - strandat 663.377 kb on - strandat 663.382 kb on + strandat 663.383 kb on - strandat 663.383 kb on - strandat 663.421 kb on + strandat 663.422 kb on - strandat 663.422 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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661,579 + Psyr_0579 0.62 -1.5
661,580 - Psyr_0579 0.62 -1.7
661,628 - Psyr_0579 0.64 -1.2
661,663 + Psyr_0579 0.65 -0.5
661,672 + Psyr_0579 0.66 -1.9
661,811 - Psyr_0579 0.71 -2.2
661,895 + Psyr_0579 0.74 +0.1
661,918 + Psyr_0579 0.75 +4.1
661,918 + Psyr_0579 0.75 -1.7
661,919 - Psyr_0579 0.75 +1.1
661,919 - Psyr_0579 0.75 -2.5
661,919 - Psyr_0579 0.75 -1.3
661,968 - Psyr_0579 0.77 -1.7
662,005 + Psyr_0579 0.78 +0.7
662,005 + Psyr_0579 0.78 +1.1
662,005 + Psyr_0579 0.78 +1.8
662,005 + Psyr_0579 0.78 -0.3
662,005 + Psyr_0579 0.78 -1.7
662,005 + Psyr_0579 0.78 +2.7
662,005 + Psyr_0579 0.78 +0.8
662,005 + Psyr_0579 0.78 +0.1
662,005 + Psyr_0579 0.78 -0.9
662,005 + Psyr_0579 0.78 +2.1
662,005 + Psyr_0579 0.78 -0.2
662,006 - Psyr_0579 0.79 -2.6
662,006 - Psyr_0579 0.79 -2.4
662,006 - Psyr_0579 0.79 -1.0
662,006 - Psyr_0579 0.79 -0.6
662,006 - Psyr_0579 0.79 +3.7
662,006 - Psyr_0579 0.79 -0.5
662,006 - Psyr_0579 0.79 +0.7
662,006 - Psyr_0579 0.79 -0.5
662,006 - Psyr_0579 0.79 +0.1
662,006 - Psyr_0579 0.79 -1.3
662,006 - Psyr_0579 0.79 -0.1
662,006 - Psyr_0579 0.79 -3.3
662,006 - Psyr_0579 0.79 -2.3
662,006 - Psyr_0579 0.79 -0.9
662,006 - Psyr_0579 0.79 -1.9
662,047 + Psyr_0579 0.80 +0.9
662,048 - Psyr_0579 0.80 +2.1
662,051 - Psyr_0579 0.80 -0.2
662,227 - Psyr_0579 0.87 +0.4
662,421 + -0.3
662,422 - -2.0
662,550 + -0.5
662,605 + +0.0
662,605 + +0.8
662,606 - +1.1
662,614 + -0.1
662,614 + -0.9
662,614 + +0.5
662,615 - +0.1
662,915 + Psyr_0580 0.46 -1.3
662,915 + Psyr_0580 0.46 +1.4
663,051 - Psyr_0580 0.64 +0.8
663,121 - Psyr_0580 0.73 +1.1
663,152 + Psyr_0580 0.77 +0.4
663,207 + Psyr_0580 0.85 +2.1
663,208 - Psyr_0580 0.85 +1.5
663,321 + -1.0
663,324 + -0.5
663,324 + +0.9
663,324 + +2.7
663,324 + -1.8
663,352 + -0.5
663,352 + +0.4
663,352 + +1.0
663,352 + -1.1
663,352 + -0.9
663,352 + +1.9
663,353 - +0.0
663,353 - +1.1
663,353 - +0.6
663,353 - -0.7
663,359 + +0.1
663,359 + -0.2
663,359 + -0.1
663,359 + +0.8
663,360 - +1.6
663,360 - -1.4
663,360 - +3.1
663,360 - +2.0
663,360 - +0.1
663,360 - -0.6
663,360 - +2.7
663,376 + -0.7
663,376 + -0.5
663,377 - -0.2
663,377 - +0.5
663,377 - +0.1
663,377 - +2.1
663,377 - -0.5
663,382 + +0.3
663,383 - -1.9
663,383 - +1.1
663,421 + +0.0
663,422 - -0.6
663,422 - +1.0

Or see this region's nucleotide sequence