Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0574

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0573 and Psyr_0574 are separated by 96 nucleotidesPsyr_0574 and Psyr_0575 overlap by 1 nucleotides Psyr_0573: Psyr_0573 - GTP-binding protein HflX, at 650,892 to 652,193 _0573 Psyr_0574: Psyr_0574 - protease FtsH subunit HflK, at 652,290 to 653,492 _0574 Psyr_0575: Psyr_0575 - protease FtsH subunit HflC, at 653,492 to 654,361 _0575 Position (kb) 652 653 654Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 651.508 kb on - strand, within Psyr_0573at 651.509 kb on + strand, within Psyr_0573at 651.509 kb on + strand, within Psyr_0573at 651.509 kb on + strand, within Psyr_0573at 651.632 kb on + strand, within Psyr_0573at 651.840 kb on + strand, within Psyr_0573at 651.840 kb on + strand, within Psyr_0573at 651.840 kb on + strand, within Psyr_0573at 651.840 kb on + strand, within Psyr_0573at 651.840 kb on + strand, within Psyr_0573at 651.840 kb on + strand, within Psyr_0573at 651.841 kb on - strand, within Psyr_0573at 651.841 kb on - strand, within Psyr_0573at 651.841 kb on - strand, within Psyr_0573at 651.841 kb on - strand, within Psyr_0573at 651.841 kb on - strand, within Psyr_0573at 651.880 kb on + strand, within Psyr_0573at 651.880 kb on + strand, within Psyr_0573at 652.191 kb on + strandat 652.192 kb on - strandat 652.192 kb on - strandat 652.213 kb on + strandat 652.235 kb on + strandat 652.235 kb on + strandat 652.236 kb on - strandat 652.322 kb on + strandat 652.528 kb on + strand, within Psyr_0574at 652.548 kb on + strand, within Psyr_0574at 652.548 kb on + strand, within Psyr_0574at 652.548 kb on + strand, within Psyr_0574at 652.548 kb on + strand, within Psyr_0574at 652.550 kb on + strand, within Psyr_0574at 652.551 kb on - strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.561 kb on - strand, within Psyr_0574at 652.561 kb on - strand, within Psyr_0574at 652.561 kb on - strand, within Psyr_0574at 652.641 kb on + strand, within Psyr_0574at 652.641 kb on + strand, within Psyr_0574at 652.665 kb on + strand, within Psyr_0574at 652.665 kb on + strand, within Psyr_0574at 652.666 kb on - strand, within Psyr_0574at 652.666 kb on - strand, within Psyr_0574at 652.695 kb on + strand, within Psyr_0574at 652.762 kb on - strand, within Psyr_0574at 653.064 kb on - strand, within Psyr_0574at 653.123 kb on + strand, within Psyr_0574at 653.192 kb on + strand, within Psyr_0574at 653.329 kb on - strand, within Psyr_0574at 653.329 kb on - strand, within Psyr_0574at 653.393 kb on + strandat 653.470 kb on + strandat 653.470 kb on + strandat 653.470 kb on + strandat 653.470 kb on + strandat 653.470 kb on + strandat 653.470 kb on + strandat 653.471 kb on - strandat 653.471 kb on - strandat 653.474 kb on + strandat 653.518 kb on + strandat 653.561 kb on + strandat 653.561 kb on + strandat 653.561 kb on + strandat 653.561 kb on + strandat 653.562 kb on - strandat 653.565 kb on + strandat 653.565 kb on + strandat 653.565 kb on + strandat 653.566 kb on - strandat 653.566 kb on - strandat 653.566 kb on - strandat 653.566 kb on - strandat 653.654 kb on + strand, within Psyr_0575at 653.756 kb on + strand, within Psyr_0575at 653.792 kb on + strand, within Psyr_0575at 653.792 kb on + strand, within Psyr_0575at 653.792 kb on + strand, within Psyr_0575at 653.792 kb on + strand, within Psyr_0575at 654.043 kb on + strand, within Psyr_0575at 654.044 kb on - strand, within Psyr_0575at 654.212 kb on + strand, within Psyr_0575at 654.213 kb on - strand, within Psyr_0575at 654.224 kb on + strand, within Psyr_0575at 654.245 kb on + strand, within Psyr_0575at 654.254 kb on + strand, within Psyr_0575at 654.360 kb on - strandat 654.363 kb on + strandat 654.363 kb on + strandat 654.363 kb on + strandat 654.363 kb on + strandat 654.364 kb on - strandat 654.364 kb on - strandat 654.364 kb on - strandat 654.405 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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651,508 - Psyr_0573 0.47 +0.5
651,509 + Psyr_0573 0.47 -2.0
651,509 + Psyr_0573 0.47 +0.1
651,509 + Psyr_0573 0.47 +0.1
651,632 + Psyr_0573 0.57 -1.7
651,840 + Psyr_0573 0.73 +0.4
651,840 + Psyr_0573 0.73 +0.4
651,840 + Psyr_0573 0.73 -0.7
651,840 + Psyr_0573 0.73 +1.1
651,840 + Psyr_0573 0.73 +0.4
651,840 + Psyr_0573 0.73 -0.9
651,841 - Psyr_0573 0.73 -0.4
651,841 - Psyr_0573 0.73 +0.9
651,841 - Psyr_0573 0.73 -1.2
651,841 - Psyr_0573 0.73 -0.9
651,841 - Psyr_0573 0.73 -2.2
651,880 + Psyr_0573 0.76 +0.6
651,880 + Psyr_0573 0.76 +1.1
652,191 + +1.3
652,192 - -0.4
652,192 - +2.1
652,213 + -0.2
652,235 + -0.9
652,235 + +0.6
652,236 - +1.1
652,322 + -0.7
652,528 + Psyr_0574 0.20 +1.1
652,548 + Psyr_0574 0.21 -1.2
652,548 + Psyr_0574 0.21 +1.6
652,548 + Psyr_0574 0.21 -0.9
652,548 + Psyr_0574 0.21 -1.7
652,550 + Psyr_0574 0.22 -0.2
652,551 - Psyr_0574 0.22 -1.4
652,560 + Psyr_0574 0.22 +2.7
652,560 + Psyr_0574 0.22 -1.9
652,560 + Psyr_0574 0.22 +0.1
652,560 + Psyr_0574 0.22 -1.7
652,560 + Psyr_0574 0.22 +0.6
652,560 + Psyr_0574 0.22 -0.4
652,560 + Psyr_0574 0.22 -2.3
652,560 + Psyr_0574 0.22 +2.1
652,560 + Psyr_0574 0.22 -1.7
652,561 - Psyr_0574 0.23 -2.9
652,561 - Psyr_0574 0.23 -0.6
652,561 - Psyr_0574 0.23 -0.7
652,641 + Psyr_0574 0.29 -2.0
652,641 + Psyr_0574 0.29 +0.6
652,665 + Psyr_0574 0.31 -0.2
652,665 + Psyr_0574 0.31 -1.9
652,666 - Psyr_0574 0.31 -0.9
652,666 - Psyr_0574 0.31 -0.9
652,695 + Psyr_0574 0.34 +0.6
652,762 - Psyr_0574 0.39 -1.0
653,064 - Psyr_0574 0.64 -0.9
653,123 + Psyr_0574 0.69 -0.8
653,192 + Psyr_0574 0.75 -2.6
653,329 - Psyr_0574 0.86 -0.4
653,329 - Psyr_0574 0.86 +1.1
653,393 + -1.1
653,470 + +0.1
653,470 + +0.5
653,470 + +0.7
653,470 + -0.6
653,470 + -0.7
653,470 + -2.6
653,471 - -1.5
653,471 - -0.9
653,474 + +1.5
653,518 + -1.3
653,561 + -0.5
653,561 + -2.8
653,561 + -0.0
653,561 + -0.3
653,562 - +1.1
653,565 + +0.1
653,565 + +0.5
653,565 + -2.5
653,566 - -0.9
653,566 - -2.2
653,566 - -0.7
653,566 - -0.7
653,654 + Psyr_0575 0.19 +1.4
653,756 + Psyr_0575 0.30 -0.2
653,792 + Psyr_0575 0.34 +0.1
653,792 + Psyr_0575 0.34 +1.5
653,792 + Psyr_0575 0.34 -0.9
653,792 + Psyr_0575 0.34 -0.5
654,043 + Psyr_0575 0.63 -0.6
654,044 - Psyr_0575 0.63 +0.5
654,212 + Psyr_0575 0.83 -0.8
654,213 - Psyr_0575 0.83 -0.9
654,224 + Psyr_0575 0.84 -0.1
654,245 + Psyr_0575 0.87 -0.7
654,254 + Psyr_0575 0.88 +1.7
654,360 - -1.0
654,363 + +0.4
654,363 + +0.2
654,363 + -1.2
654,363 + +0.1
654,364 - -0.4
654,364 - -0.2
654,364 - -0.5
654,405 + -0.0
654,421 + -0.4
654,421 + +0.2
654,421 + -0.3
654,421 + -0.7
654,421 + +0.1
654,421 + +0.5
654,421 + +1.1
654,421 + +0.4
654,421 + +0.9

Or see this region's nucleotide sequence