Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0431 and Psyr_0432 are separated by 54 nucleotides Psyr_0432 and Psyr_0433 overlap by 4 nucleotides Psyr_0433 and Psyr_0434 overlap by 8 nucleotides
Psyr_0431: Psyr_0431 - Thioesterase superfamily, at 470,613 to 471,062
_0431
Psyr_0432: Psyr_0432 - conserved hypothetical protein, at 471,117 to 472,064
_0432
Psyr_0433: Psyr_0433 - Glycosyl transferase, family 2, at 472,061 to 472,795
_0433
Psyr_0434: Psyr_0434 - AMP-dependent synthetase and ligase, at 472,788 to 474,479
_0434
Position (kb) 472
473 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 471.064 kb on + strand at 471.064 kb on + strand at 471.064 kb on + strand at 471.064 kb on + strand at 471.064 kb on + strand at 471.065 kb on - strand at 471.065 kb on - strand at 471.065 kb on - strand at 471.093 kb on + strand at 471.093 kb on + strand at 471.093 kb on + strand at 471.094 kb on - strand at 471.094 kb on - strand at 471.094 kb on - strand at 471.094 kb on - strand at 471.094 kb on - strand at 471.878 kb on - strand, within Psyr_0432 at 471.923 kb on - strand, within Psyr_0432 at 471.923 kb on - strand, within Psyr_0432 at 471.923 kb on - strand, within Psyr_0432 at 471.937 kb on + strand, within Psyr_0432 at 472.192 kb on - strand, within Psyr_0433 at 472.399 kb on - strand, within Psyr_0433 at 472.407 kb on + strand, within Psyr_0433 at 472.408 kb on - strand, within Psyr_0433 at 472.629 kb on + strand, within Psyr_0433 at 472.629 kb on + strand, within Psyr_0433 at 472.630 kb on - strand, within Psyr_0433 at 472.630 kb on - strand, within Psyr_0433 at 472.630 kb on - strand, within Psyr_0433 at 472.630 kb on - strand, within Psyr_0433 at 472.630 kb on - strand, within Psyr_0433 at 472.634 kb on - strand, within Psyr_0433 at 472.658 kb on + strand, within Psyr_0433 at 472.789 kb on + strand at 472.789 kb on + strand at 472.789 kb on + strand at 472.789 kb on + strand at 472.789 kb on + strand at 472.789 kb on + strand at 472.789 kb on + strand at 472.790 kb on - strand at 472.790 kb on - strand at 472.790 kb on - strand at 472.790 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 471,064 + +0.1 471,064 + -0.2 471,064 + +0.4 471,064 + +3.1 471,064 + +0.6 471,065 - +0.5 471,065 - -0.0 471,065 - -1.9 471,093 + +0.7 471,093 + +0.1 471,093 + -0.3 471,094 - -0.3 471,094 - +3.0 471,094 - +0.1 471,094 - -0.6 471,094 - -0.1 471,878 - Psyr_0432 0.80 -0.9 471,923 - Psyr_0432 0.85 -0.4 471,923 - Psyr_0432 0.85 +1.3 471,923 - Psyr_0432 0.85 +1.6 471,937 + Psyr_0432 0.86 -0.8 472,192 - Psyr_0433 0.18 +1.2 472,399 - Psyr_0433 0.46 -0.1 472,407 + Psyr_0433 0.47 +0.5 472,408 - Psyr_0433 0.47 +0.9 472,629 + Psyr_0433 0.77 +0.5 472,629 + Psyr_0433 0.77 +0.7 472,630 - Psyr_0433 0.77 -0.1 472,630 - Psyr_0433 0.77 +1.6 472,630 - Psyr_0433 0.77 -0.7 472,630 - Psyr_0433 0.77 +3.4 472,630 - Psyr_0433 0.77 +1.7 472,634 - Psyr_0433 0.78 -1.0 472,658 + Psyr_0433 0.81 +1.1 472,789 + +1.2 472,789 + +0.4 472,789 + -0.9 472,789 + +0.2 472,789 + +0.5 472,789 + +1.1 472,789 + -0.9 472,790 - +1.0 472,790 - -0.3 472,790 - +0.1 472,790 - +0.1
Or see this region's nucleotide sequence