Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0158 and Psyr_0159 are separated by 45 nucleotides Psyr_0159 and Psyr_0160 are separated by 534 nucleotides
Psyr_0158: Psyr_0158 - FAD dependent oxidoreductase, at 172,214 to 173,509
_0158
Psyr_0159: Psyr_0159 - HAD-superfamily hydrolase, subfamily IA, variant 2, at 173,555 to 174,223
_0159
Psyr_0160: Psyr_0160 - GCN5-related N-acetyltransferase, at 174,758 to 175,615
_0160
Position (kb) 173
174
175 Strain fitness (log2 ratio) -2
-1
0
1
2 at 172.632 kb on + strand, within Psyr_0158 at 172.632 kb on + strand, within Psyr_0158 at 172.632 kb on + strand, within Psyr_0158 at 172.633 kb on - strand, within Psyr_0158 at 172.633 kb on - strand, within Psyr_0158 at 172.633 kb on - strand, within Psyr_0158 at 172.633 kb on - strand, within Psyr_0158 at 172.659 kb on + strand, within Psyr_0158 at 172.659 kb on + strand, within Psyr_0158 at 172.659 kb on + strand, within Psyr_0158 at 172.659 kb on + strand, within Psyr_0158 at 172.660 kb on - strand, within Psyr_0158 at 172.660 kb on - strand, within Psyr_0158 at 172.660 kb on - strand, within Psyr_0158 at 172.660 kb on - strand, within Psyr_0158 at 172.887 kb on + strand, within Psyr_0158 at 172.887 kb on + strand, within Psyr_0158 at 172.887 kb on + strand, within Psyr_0158 at 172.888 kb on - strand, within Psyr_0158 at 172.888 kb on - strand, within Psyr_0158 at 172.956 kb on - strand, within Psyr_0158 at 173.092 kb on - strand, within Psyr_0158 at 173.196 kb on + strand, within Psyr_0158 at 173.205 kb on + strand, within Psyr_0158 at 173.205 kb on + strand, within Psyr_0158 at 173.205 kb on + strand, within Psyr_0158 at 173.205 kb on + strand, within Psyr_0158 at 173.205 kb on + strand, within Psyr_0158 at 173.205 kb on + strand, within Psyr_0158 at 173.205 kb on + strand, within Psyr_0158 at 173.205 kb on + strand, within Psyr_0158 at 173.205 kb on + strand, within Psyr_0158 at 173.205 kb on + strand, within Psyr_0158 at 173.205 kb on + strand, within Psyr_0158 at 173.205 kb on + strand, within Psyr_0158 at 173.206 kb on - strand, within Psyr_0158 at 173.206 kb on - strand, within Psyr_0158 at 173.206 kb on - strand, within Psyr_0158 at 173.206 kb on - strand, within Psyr_0158 at 173.206 kb on - strand, within Psyr_0158 at 173.206 kb on - strand, within Psyr_0158 at 173.253 kb on + strand, within Psyr_0158 at 173.253 kb on + strand, within Psyr_0158 at 173.253 kb on + strand, within Psyr_0158 at 173.253 kb on + strand, within Psyr_0158 at 173.253 kb on + strand, within Psyr_0158 at 173.253 kb on + strand, within Psyr_0158 at 173.254 kb on - strand, within Psyr_0158 at 173.254 kb on - strand, within Psyr_0158 at 173.254 kb on - strand, within Psyr_0158 at 173.273 kb on - strand, within Psyr_0158 at 173.472 kb on + strand at 173.473 kb on - strand at 173.556 kb on + strand at 173.782 kb on + strand, within Psyr_0159 at 173.782 kb on + strand, within Psyr_0159 at 173.784 kb on + strand, within Psyr_0159 at 173.784 kb on + strand, within Psyr_0159 at 173.784 kb on + strand, within Psyr_0159 at 173.785 kb on - strand, within Psyr_0159 at 173.785 kb on - strand, within Psyr_0159 at 173.961 kb on + strand, within Psyr_0159 at 173.962 kb on - strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 174.042 kb on + strand, within Psyr_0159 at 174.043 kb on - strand, within Psyr_0159 at 174.078 kb on + strand, within Psyr_0159 at 174.079 kb on - strand, within Psyr_0159 at 174.183 kb on + strand at 174.196 kb on + strand at 174.197 kb on - strand at 174.197 kb on - strand at 174.319 kb on + strand at 174.319 kb on + strand at 174.320 kb on - strand at 174.320 kb on - strand at 174.320 kb on - strand at 174.348 kb on + strand at 174.349 kb on - strand at 174.452 kb on - strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.549 kb on + strand at 174.549 kb on + strand at 174.549 kb on + strand at 174.549 kb on + strand at 174.549 kb on + strand at 174.550 kb on - strand at 174.550 kb on - strand at 174.550 kb on - strand at 174.550 kb on - strand at 174.550 kb on - strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.611 kb on + strand at 174.611 kb on + strand at 174.611 kb on + strand at 174.618 kb on + strand at 174.618 kb on + strand at 174.619 kb on - strand at 174.619 kb on - strand at 174.699 kb on + strand at 174.699 kb on + strand at 174.699 kb on + strand at 174.699 kb on + strand at 174.700 kb on - strand at 174.700 kb on - strand at 174.700 kb on - strand at 174.700 kb on - strand at 174.723 kb on + strand at 174.723 kb on + strand at 174.724 kb on - strand at 174.831 kb on + strand at 174.831 kb on + strand at 175.182 kb on + strand, within Psyr_0160 at 175.182 kb on + strand, within Psyr_0160 at 175.183 kb on - strand, within Psyr_0160
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 172,632 + Psyr_0158 0.32 -0.4 172,632 + Psyr_0158 0.32 +1.4 172,632 + Psyr_0158 0.32 +0.3 172,633 - Psyr_0158 0.32 +0.1 172,633 - Psyr_0158 0.32 -0.4 172,633 - Psyr_0158 0.32 +1.1 172,633 - Psyr_0158 0.32 -1.3 172,659 + Psyr_0158 0.34 +1.1 172,659 + Psyr_0158 0.34 +0.6 172,659 + Psyr_0158 0.34 +0.5 172,659 + Psyr_0158 0.34 +0.5 172,660 - Psyr_0158 0.34 -0.3 172,660 - Psyr_0158 0.34 -0.9 172,660 - Psyr_0158 0.34 -0.1 172,660 - Psyr_0158 0.34 -0.7 172,887 + Psyr_0158 0.52 +1.0 172,887 + Psyr_0158 0.52 -0.5 172,887 + Psyr_0158 0.52 +1.1 172,888 - Psyr_0158 0.52 +0.4 172,888 - Psyr_0158 0.52 +1.5 172,956 - Psyr_0158 0.57 -0.7 173,092 - Psyr_0158 0.68 +0.6 173,196 + Psyr_0158 0.76 +1.5 173,205 + Psyr_0158 0.76 +0.5 173,205 + Psyr_0158 0.76 +0.6 173,205 + Psyr_0158 0.76 -0.1 173,205 + Psyr_0158 0.76 +1.0 173,205 + Psyr_0158 0.76 +1.0 173,205 + Psyr_0158 0.76 -0.1 173,205 + Psyr_0158 0.76 +0.1 173,205 + Psyr_0158 0.76 +0.3 173,205 + Psyr_0158 0.76 -1.2 173,205 + Psyr_0158 0.76 +0.5 173,205 + Psyr_0158 0.76 +0.0 173,205 + Psyr_0158 0.76 -1.5 173,206 - Psyr_0158 0.77 -1.3 173,206 - Psyr_0158 0.77 +0.5 173,206 - Psyr_0158 0.77 -1.3 173,206 - Psyr_0158 0.77 +0.7 173,206 - Psyr_0158 0.77 -0.6 173,206 - Psyr_0158 0.77 -0.1 173,253 + Psyr_0158 0.80 -0.9 173,253 + Psyr_0158 0.80 +2.5 173,253 + Psyr_0158 0.80 +0.3 173,253 + Psyr_0158 0.80 -0.5 173,253 + Psyr_0158 0.80 -0.9 173,253 + Psyr_0158 0.80 -0.5 173,254 - Psyr_0158 0.80 -0.8 173,254 - Psyr_0158 0.80 -0.3 173,254 - Psyr_0158 0.80 -0.2 173,273 - Psyr_0158 0.82 +2.0 173,472 + +0.5 173,473 - +0.5 173,556 + +0.6 173,782 + Psyr_0159 0.34 +0.1 173,782 + Psyr_0159 0.34 -0.9 173,784 + Psyr_0159 0.34 +0.5 173,784 + Psyr_0159 0.34 -0.6 173,784 + Psyr_0159 0.34 -0.3 173,785 - Psyr_0159 0.34 -0.3 173,785 - Psyr_0159 0.34 -0.1 173,961 + Psyr_0159 0.61 -0.9 173,962 - Psyr_0159 0.61 -1.9 173,964 + Psyr_0159 0.61 +0.3 173,964 + Psyr_0159 0.61 +1.1 173,964 + Psyr_0159 0.61 +1.6 173,964 + Psyr_0159 0.61 +1.0 173,964 + Psyr_0159 0.61 -1.5 173,964 + Psyr_0159 0.61 -0.4 173,964 + Psyr_0159 0.61 -1.0 173,964 + Psyr_0159 0.61 +1.2 173,964 + Psyr_0159 0.61 -0.1 173,964 + Psyr_0159 0.61 +1.6 173,965 - Psyr_0159 0.61 -0.9 173,965 - Psyr_0159 0.61 +0.3 173,965 - Psyr_0159 0.61 +2.2 173,965 - Psyr_0159 0.61 +0.9 173,965 - Psyr_0159 0.61 +1.0 173,965 - Psyr_0159 0.61 +1.0 173,965 - Psyr_0159 0.61 +0.5 173,965 - Psyr_0159 0.61 -0.7 174,042 + Psyr_0159 0.73 +0.1 174,043 - Psyr_0159 0.73 +0.8 174,078 + Psyr_0159 0.78 -0.5 174,079 - Psyr_0159 0.78 +0.4 174,183 + -0.3 174,196 + -2.5 174,197 - -0.4 174,197 - -0.2 174,319 + -0.2 174,319 + -2.1 174,320 - -1.0 174,320 - -0.2 174,320 - -0.4 174,348 + -0.2 174,349 - +0.6 174,452 - +1.0 174,547 + +0.2 174,547 + -1.2 174,547 + -0.9 174,547 + -0.4 174,547 + +0.1 174,547 + -0.5 174,547 + +0.2 174,547 + +0.8 174,547 + -0.9 174,547 + -0.8 174,547 + +1.1 174,548 - +0.5 174,548 - +0.9 174,548 - +0.6 174,548 - -0.2 174,548 - -1.2 174,548 - +2.0 174,548 - -1.3 174,548 - +0.9 174,548 - +0.8 174,549 + +0.8 174,549 + +0.7 174,549 + +1.1 174,549 + +0.2 174,549 + -0.8 174,550 - +0.5 174,550 - +0.4 174,550 - -0.4 174,550 - +0.1 174,550 - +1.5 174,551 + +0.3 174,551 + -0.6 174,551 + -0.0 174,551 + +2.5 174,551 + +0.5 174,551 + +2.5 174,551 + +0.6 174,551 + -0.1 174,551 + -0.5 174,551 + +0.5 174,551 + -0.2 174,551 + +0.3 174,552 - -2.5 174,552 - -2.3 174,552 - +0.8 174,552 - +1.2 174,552 - +1.0 174,552 - +0.5 174,552 - -2.0 174,552 - +0.2 174,611 + +2.5 174,611 + -0.4 174,611 + +1.5 174,618 + -0.9 174,618 + +0.2 174,619 - -0.3 174,619 - -1.6 174,699 + +0.4 174,699 + -0.2 174,699 + -0.4 174,699 + +0.5 174,700 - +0.3 174,700 - -1.6 174,700 - +0.8 174,700 - -0.1 174,723 + -0.3 174,723 + -0.1 174,724 - -0.8 174,831 + +0.4 174,831 + -0.7 175,182 + Psyr_0160 0.49 +1.0 175,182 + Psyr_0160 0.49 +0.5 175,183 - Psyr_0160 0.50 -0.7
Or see this region's nucleotide sequence