Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0130

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
137,094	-				-0.2
137,107	-				+0.7
137,132	+				-0.2
137,133	-				-0.2
137,146	+				-1.0
137,146	+				-0.2
137,146	+				+1.2
137,146	+				+1.2
137,147	-				+1.5
137,147	-				-0.2
137,147	-				-0.3
137,147	-				+0.5
137,147	-				-1.5
137,147	-				+0.3
137,149	-				-2.0
137,157	+				+0.1
137,157	+				-0.6
137,157	+				+0.3
137,158	-				+1.2
137,158	-				+1.5
137,158	-				-0.1
137,158	-				-1.3
137,299	+		Psyr_0128	0.38	+0.5
137,300	-		Psyr_0128	0.38	+0.7
137,410	+		Psyr_0128	0.68	-0.3
137,410	+		Psyr_0128	0.68	+0.4
137,411	-		Psyr_0128	0.68	-0.2
137,411	-		Psyr_0128	0.68	-1.7
137,411	-		Psyr_0128	0.68	-0.2
137,412	+		Psyr_0128	0.69	+0.4
137,412	+		Psyr_0128	0.69	-1.8
137,412	+		Psyr_0128	0.69	+0.1
137,412	+		Psyr_0128	0.69	+1.6
137,412	+		Psyr_0128	0.69	+0.1
137,412	+		Psyr_0128	0.69	+0.7
137,413	-		Psyr_0128	0.69	-0.5
137,413	-		Psyr_0128	0.69	-0.3
137,413	-		Psyr_0128	0.69	-0.8
137,435	+		Psyr_0128	0.75	-1.1
137,435	+		Psyr_0128	0.75	+0.4
137,436	-		Psyr_0128	0.75	-1.4
137,525	-				+0.2
137,525	-				-0.9
137,525	-				+0.5
137,525	-				+0.6
137,525	-				-1.2
137,525	-				-1.9
137,648	-				+0.1
137,648	-				+0.9
137,648	-				+0.8
137,648	-				-1.3
137,700	+		Psyr_0129	0.15	-0.5
137,700	+		Psyr_0129	0.15	-0.4
137,700	+		Psyr_0129	0.15	+0.8
137,700	+		Psyr_0129	0.15	-0.7
137,700	+		Psyr_0129	0.15	+0.6
137,700	+		Psyr_0129	0.15	+0.3
137,701	-		Psyr_0129	0.15	-0.0
137,701	-		Psyr_0129	0.15	-0.3
137,701	-		Psyr_0129	0.15	+1.6
137,717	+		Psyr_0129	0.20	+0.7
137,717	+		Psyr_0129	0.20	+0.1
137,718	-		Psyr_0129	0.21	-0.6
137,737	-		Psyr_0129	0.27	-0.1
137,744	+		Psyr_0129	0.29	-0.2
137,744	+		Psyr_0129	0.29	-1.3
137,745	-		Psyr_0129	0.30	+0.9
137,745	-		Psyr_0129	0.30	+0.2
137,745	-		Psyr_0129	0.30	-0.4
137,745	-		Psyr_0129	0.30	-0.8
137,850	+		Psyr_0129	0.65	-0.6
137,980	+				+0.1
138,007	+				+0.3
138,007	+				+0.4
138,007	+				+0.4
138,007	+				-0.4
138,007	+				+1.8
138,007	+				+0.1
138,110	-				+0.9
138,151	+				-0.4
138,151	+				+1.0
138,151	+				-0.7
138,206	+		Psyr_0130	0.14	-0.8
138,227	+		Psyr_0130	0.16	+2.2
138,227	+		Psyr_0130	0.16	-1.3
138,227	+		Psyr_0130	0.16	-0.5
138,227	+		Psyr_0130	0.16	-1.7
138,227	+		Psyr_0130	0.16	+0.2
138,227	+		Psyr_0130	0.16	+0.7
138,227	+		Psyr_0130	0.16	-0.4
138,227	+		Psyr_0130	0.16	-1.2
138,227	+		Psyr_0130	0.16	+0.1
138,227	+		Psyr_0130	0.16	+0.5
138,227	+		Psyr_0130	0.16	-0.4
138,227	+		Psyr_0130	0.16	+0.0
138,227	+		Psyr_0130	0.16	-1.1
138,227	+		Psyr_0130	0.16	+0.5
138,228	-		Psyr_0130	0.16	+0.5
138,228	-		Psyr_0130	0.16	+0.5
138,228	-		Psyr_0130	0.16	+0.1
138,228	-		Psyr_0130	0.16	-1.9
138,228	-		Psyr_0130	0.16	-2.0
138,228	-		Psyr_0130	0.16	-1.8
138,228	-		Psyr_0130	0.16	+0.2
138,228	-		Psyr_0130	0.16	-1.1
138,228	-		Psyr_0130	0.16	-0.5
138,228	-		Psyr_0130	0.16	-0.5
138,228	-		Psyr_0130	0.16	-0.0
138,228	-		Psyr_0130	0.16	-0.5
138,228	-		Psyr_0130	0.16	-1.4
138,228	-		Psyr_0130	0.16	-0.1
138,240	+		Psyr_0130	0.17	+0.7
138,241	-		Psyr_0130	0.17	+0.4
138,241	-		Psyr_0130	0.17	-1.5
138,302	+		Psyr_0130	0.24	-1.1
138,302	+		Psyr_0130	0.24	+0.7
138,386	+		Psyr_0130	0.33	-2.4
138,386	+		Psyr_0130	0.33	-0.6
138,386	+		Psyr_0130	0.33	-0.4
138,386	+		Psyr_0130	0.33	-1.1
138,386	+		Psyr_0130	0.33	+0.5
138,386	+		Psyr_0130	0.33	+3.1
138,387	-		Psyr_0130	0.33	-1.2
138,404	+		Psyr_0130	0.35	+0.5
138,404	+		Psyr_0130	0.35	+0.3
138,405	-		Psyr_0130	0.35	-0.2
138,454	+		Psyr_0130	0.41	+0.6
138,454	+		Psyr_0130	0.41	-0.4
138,454	+		Psyr_0130	0.41	+0.5
138,455	-		Psyr_0130	0.41	+0.5
138,541	+		Psyr_0130	0.50	+0.5
138,542	-		Psyr_0130	0.50	-0.3
138,628	+		Psyr_0130	0.60	-0.5
138,628	+		Psyr_0130	0.60	+0.7
138,628	+		Psyr_0130	0.60	+1.9
138,629	-		Psyr_0130	0.60	+3.5
138,629	-		Psyr_0130	0.60	+0.9
138,629	-		Psyr_0130	0.60	-1.0
138,629	-		Psyr_0130	0.60	+0.7
138,629	-		Psyr_0130	0.60	-0.5
138,629	-		Psyr_0130	0.60	-1.0
138,629	-		Psyr_0130	0.60	-0.1
138,629	-		Psyr_0130	0.60	-0.8
138,629	-		Psyr_0130	0.60	+0.2
138,629	-		Psyr_0130	0.60	-0.2
138,629	-		Psyr_0130	0.60	+0.2
138,634	+		Psyr_0130	0.61	-0.4
138,634	+		Psyr_0130	0.61	+0.3
138,634	+		Psyr_0130	0.61	-0.3
138,634	+		Psyr_0130	0.61	-0.2
138,634	+		Psyr_0130	0.61	-0.9
138,634	+		Psyr_0130	0.61	-0.7
138,634	+		Psyr_0130	0.61	-0.0
138,634	+		Psyr_0130	0.61	-1.4
138,634	+		Psyr_0130	0.61	-1.5
138,634	+		Psyr_0130	0.61	-0.1
138,634	+		Psyr_0130	0.61	-1.4
138,634	+		Psyr_0130	0.61	-0.4
138,634	+		Psyr_0130	0.61	-0.2
138,634	+		Psyr_0130	0.61	+0.3
138,634	+		Psyr_0130	0.61	-0.5
138,634	+		Psyr_0130	0.61	-0.2
138,634	+		Psyr_0130	0.61	+0.1
138,634	+		Psyr_0130	0.61	-1.3
138,634	+		Psyr_0130	0.61	-0.4
138,634	+		Psyr_0130	0.61	-0.1
138,635	-		Psyr_0130	0.61	-0.3
138,635	-		Psyr_0130	0.61	-1.9
138,635	-		Psyr_0130	0.61	+0.1
138,635	-		Psyr_0130	0.61	+0.5
138,635	-		Psyr_0130	0.61	-0.1
138,635	-		Psyr_0130	0.61	+0.6
138,635	-		Psyr_0130	0.61	+0.3
138,635	-		Psyr_0130	0.61	+0.3
138,635	-		Psyr_0130	0.61	-1.3
138,635	-		Psyr_0130	0.61	+0.4
138,635	-		Psyr_0130	0.61	+0.6
138,635	-		Psyr_0130	0.61	+1.5
138,635	-		Psyr_0130	0.61	+0.4
138,635	-		Psyr_0130	0.61	-0.3
138,635	-		Psyr_0130	0.61	+1.5
138,635	-		Psyr_0130	0.61	+0.8
138,635	-		Psyr_0130	0.61	-0.7
138,635	-		Psyr_0130	0.61	-1.1
138,635	-		Psyr_0130	0.61	+0.0
138,635	-		Psyr_0130	0.61	+0.5
138,635	-		Psyr_0130	0.61	+0.1
138,635	-		Psyr_0130	0.61	-0.5
138,635	-		Psyr_0130	0.61	-2.2
138,635	-		Psyr_0130	0.61	-1.5
138,635	-		Psyr_0130	0.61	-0.3
138,635	-		Psyr_0130	0.61	+0.4
138,635	-		Psyr_0130	0.61	+0.5
138,635	-		Psyr_0130	0.61	+1.0
138,635	-		Psyr_0130	0.61	+0.5
138,635	-		Psyr_0130	0.61	+1.0
138,635	-		Psyr_0130	0.61	-0.3
138,637	-		Psyr_0130	0.61	-1.1
138,729	+		Psyr_0130	0.71	+0.1
138,729	+		Psyr_0130	0.71	-0.1
138,729	+		Psyr_0130	0.71	-0.1
138,729	+		Psyr_0130	0.71	-1.5
138,729	+		Psyr_0130	0.71	-0.3
138,729	+		Psyr_0130	0.71	-0.5
138,729	+		Psyr_0130	0.71	-0.4
138,730	-		Psyr_0130	0.71	-2.1
138,730	-		Psyr_0130	0.71	+0.6
138,730	-		Psyr_0130	0.71	+0.1
138,730	-		Psyr_0130	0.71	-1.1
138,795	+		Psyr_0130	0.78	+0.2
138,795	+		Psyr_0130	0.78	+0.3
138,795	+		Psyr_0130	0.78	+1.7
138,795	+		Psyr_0130	0.78	-1.3
138,795	+		Psyr_0130	0.78	-0.1
138,795	+		Psyr_0130	0.78	+1.5
138,795	+		Psyr_0130	0.78	+0.5
138,795	+		Psyr_0130	0.78	-0.6
138,796	-		Psyr_0130	0.78	+1.5
138,796	-		Psyr_0130	0.78	-0.7
138,796	-		Psyr_0130	0.78	+0.2
138,796	-		Psyr_0130	0.78	+0.3
138,796	-		Psyr_0130	0.78	-1.1
138,796	-		Psyr_0130	0.78	+0.0
138,796	-		Psyr_0130	0.78	-0.2
138,796	-		Psyr_0130	0.78	+2.5
138,796	-		Psyr_0130	0.78	+0.5
138,877	+		Psyr_0130	0.87	-0.5
138,877	+		Psyr_0130	0.87	-0.1
138,877	+		Psyr_0130	0.87	-1.4
138,877	+		Psyr_0130	0.87	-0.5
138,877	+		Psyr_0130	0.87	-0.7
138,877	+		Psyr_0130	0.87	-0.2
138,877	+		Psyr_0130	0.87	+0.2
138,878	-		Psyr_0130	0.87	-1.3
138,878	-		Psyr_0130	0.87	-0.1
138,878	-		Psyr_0130	0.87	-0.0
138,878	-		Psyr_0130	0.87	-0.5
138,878	-		Psyr_0130	0.87	+0.9
138,878	-		Psyr_0130	0.87	-0.6
138,944	+				-0.1
138,944	+				+1.1
138,944	+				+0.3
138,944	+				+0.2
138,944	+				-0.3
138,944	+				-1.1
138,944	+				+0.8
138,944	+				+0.2
138,944	+				+0.8
138,944	+				-0.4
138,944	+				-0.3
138,944	+				-1.3
138,945	-				-0.3
138,945	-				-1.1
138,945	-				-0.1
138,945	-				+1.9
138,945	-				+0.7
138,945	-				+0.7
138,945	-				+1.0
138,945	-				-1.6
138,945	-				+0.9
138,952	+				-0.9
138,952	+				-0.3
138,953	-				+1.1
139,008	+				+0.0
139,008	+				-1.4
139,008	+				-0.8
139,008	+				+0.3
139,008	+				-1.2
139,009	-				-1.6
139,029	+				+0.3
139,030	-				+0.6
139,030	-				+0.2
139,030	-				-0.6
139,030	-				+0.0
139,030	-				-0.8
139,030	-				+0.6
139,030	-				-0.6
139,030	-				-1.6
139,030	-				+1.0
139,030	-				+0.2
139,030	-				+1.5
139,081	+				-2.2
139,081	+				+1.1
139,136	+				+0.3
139,136	+				-0.1
139,137	-				+0.7
139,155	+				-1.2
139,156	-				+1.1
139,172	+				-0.1
139,172	+				+1.1
139,172	+				+0.9
139,173	-				-0.3
139,173	-				+0.3
139,173	-				-0.5
139,282	+				-0.9
139,282	+				+0.7
139,282	+				-0.4
139,282	+				-1.0
139,282	+				+1.5
139,282	+				-0.7
139,282	+				-1.3
139,282	+				+0.5
139,283	-				-1.8
139,283	-				-0.2
139,283	-				-0.5
139,283	-				+0.8
139,300	+				-0.3
139,460	+				+1.2
139,580	+				-0.5
139,586	+				-0.9
139,586	+				+0.5
139,587	-				+0.1
139,710	-		Psyr_0131	0.18	-0.8
139,710	-		Psyr_0131	0.18	+0.8
139,827	+				-0.1
139,828	-		Psyr_0131	0.36	+0.2