Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0085

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
90,463	-		Psyr_0084	0.19	-0.9
90,728	+		Psyr_0084	0.46	+1.7
90,728	+		Psyr_0084	0.46	+0.5
90,728	+		Psyr_0084	0.46	-1.0
90,728	+		Psyr_0084	0.46	-0.4
90,728	+		Psyr_0084	0.46	-0.5
90,729	-		Psyr_0084	0.46	+0.2
90,729	-		Psyr_0084	0.46	+0.1
90,729	-		Psyr_0084	0.46	-0.1
90,729	-		Psyr_0084	0.46	-0.1
90,729	-		Psyr_0084	0.46	+0.1
90,729	-		Psyr_0084	0.46	+0.4
90,729	-		Psyr_0084	0.46	+0.0
90,729	-		Psyr_0084	0.46	-0.2
90,729	-		Psyr_0084	0.46	-0.4
90,732	+		Psyr_0084	0.46	+0.1
90,732	+		Psyr_0084	0.46	+1.7
90,732	+		Psyr_0084	0.46	-0.1
90,732	+		Psyr_0084	0.46	+0.3
90,732	+		Psyr_0084	0.46	+0.3
90,733	-		Psyr_0084	0.46	+1.0
90,733	-		Psyr_0084	0.46	+1.7
90,733	-		Psyr_0084	0.46	-0.5
90,733	-		Psyr_0084	0.46	-0.9
90,733	-		Psyr_0084	0.46	-1.3
90,733	-		Psyr_0084	0.46	-1.9
90,927	+		Psyr_0084	0.65	-0.2
90,927	+		Psyr_0084	0.65	-0.1
90,928	-		Psyr_0084	0.65	-0.9
90,928	-		Psyr_0084	0.65	+0.3
90,928	-		Psyr_0084	0.65	-1.5
90,928	-		Psyr_0084	0.65	+0.1
90,928	-		Psyr_0084	0.65	-0.6
90,928	-		Psyr_0084	0.65	+0.1
91,152	+		Psyr_0084	0.88	+1.5
91,152	+		Psyr_0084	0.88	-0.7
91,152	+		Psyr_0084	0.88	-0.4
91,152	+		Psyr_0084	0.88	+0.8
91,152	+		Psyr_0084	0.88	-1.6
91,152	+		Psyr_0084	0.88	+0.7
91,153	-		Psyr_0084	0.88	+0.9
91,161	+		Psyr_0084	0.89	-1.1
91,161	+		Psyr_0084	0.89	+0.1
91,162	-		Psyr_0084	0.89	-1.0
91,162	-		Psyr_0084	0.89	+0.1
91,183	-				+0.6
91,183	-				-1.0
91,183	-				+0.4
91,183	-				+0.3
91,276	+				-1.3
91,276	+				-0.5
91,276	+				-0.9
91,276	+				+0.0
91,276	+				+0.9
91,276	+				+0.1
91,276	+				+0.2
91,276	+				+1.1
91,276	+				-1.1
91,276	+				-2.7
91,276	+				-0.1
91,276	+				+1.3
91,276	+				-1.3
91,277	-				-0.1
91,277	-				+0.1
91,277	-				-0.1
91,277	-				+0.1
91,277	-				+0.9
91,277	-				+3.3
91,277	-				+1.2
91,277	-				+0.3
91,277	-				+0.6
91,277	-				+0.2
91,277	-				+0.1
91,277	-				+0.7
91,296	+				-0.5
91,296	+				-0.2
91,296	+				-1.0
91,296	+				+0.8
91,296	+				-1.7
91,297	-				+0.7
91,297	-				-0.0
91,589	+		Psyr_0085	0.89	+0.1
91,589	+		Psyr_0085	0.89	-0.9
91,589	+		Psyr_0085	0.89	+0.4
91,589	+		Psyr_0085	0.89	+0.5
91,589	+		Psyr_0085	0.89	-0.0
91,589	+		Psyr_0085	0.89	+0.1
91,589	+		Psyr_0085	0.89	+0.1
91,589	+		Psyr_0085	0.89	-1.4
91,589	+		Psyr_0085	0.89	+0.6
91,589	+		Psyr_0085	0.89	+2.1
91,590	-				-1.5
91,590	-				-0.0
91,590	-				+0.5
91,593	+				-1.0
91,593	+				-1.5
91,593	+				-0.1
91,593	+				+1.2
91,593	+				-0.9
91,593	+				+2.7
91,594	-				-0.8
91,594	-				+2.1
91,594	-				-0.9
91,594	-				+1.0
91,594	-				+0.5
91,613	+				-0.3
91,613	+				-0.4
91,614	-				+0.3
91,614	-				+0.5
91,614	-				+0.3
91,614	-				+0.2
91,662	+				-0.1
91,678	+				+0.5
91,681	+				-0.7
91,681	+				+0.3
91,682	-				-0.6
91,682	-				-1.0
91,682	-				+0.3
91,682	-				-1.1
91,682	-				-0.4
91,682	-				+1.7
91,682	-				-1.5
91,682	-				+0.5
91,809	+				+0.4
91,809	+				+0.7
91,809	+				-0.3
91,809	+				-0.9
91,809	+				-0.1
91,809	+				+1.0
91,809	+				+0.2
91,810	-				-0.5
91,810	-				+0.9
91,810	-				-0.1
91,810	-				+0.7
91,810	-				+0.0
91,810	-				-1.4
91,902	-				-1.7
91,902	-				-0.2
92,485	+		Psyr_0086	0.35	-0.4
92,485	+		Psyr_0086	0.35	+0.3
92,505	+		Psyr_0086	0.36	+1.3
92,517	+		Psyr_0086	0.37	-1.3
92,517	+		Psyr_0086	0.37	-0.0
92,518	-		Psyr_0086	0.37	-0.4
92,518	-		Psyr_0086	0.37	+1.5