Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05605

Experiment: H2 deepwell casamino FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 deepwell casamino FREE
1,073,959	+		MMP_RS05595	0.83	+0.1
1,074,061	-				-0.5
1,074,061	-				-0.3
1,074,061	-				+0.1
1,074,062	+				+0.5
1,074,068	+				+0.2
1,074,072	-				-0.6
1,074,075	-				-0.0
1,074,076	+				-0.4
1,074,109	-				-0.4
1,074,109	-				+0.2
1,074,109	-				+0.1
1,074,110	+				-1.1
1,074,110	+				+1.0
1,074,110	+				+0.4
1,074,116	+				+1.1
1,074,116	+				+0.4
1,074,116	+				+0.1
1,074,117	-				+0.8
1,074,123	-				+1.4
1,074,124	+				+0.2
1,074,124	+				+0.8
1,074,128	-				+0.6
1,074,131	-				-0.7
1,074,141	+				+0.5
1,074,161	-				-0.8
1,074,161	-				+0.7
1,074,175	+				+0.6
1,074,193	-		MMP_RS05600	0.11	+0.3
1,074,193	-		MMP_RS05600	0.11	+0.3
1,074,194	+		MMP_RS05600	0.11	+0.5
1,074,194	+		MMP_RS05600	0.11	+0.1
1,074,194	+		MMP_RS05600	0.11	+0.4
1,074,194	+		MMP_RS05600	0.11	+0.9
1,074,194	+		MMP_RS05600	0.11	+1.4
1,074,194	+		MMP_RS05600	0.11	+1.0
1,074,197	-		MMP_RS05600	0.12	+1.3
1,074,197	-		MMP_RS05600	0.12	+0.7
1,074,198	+		MMP_RS05600	0.12	+0.9
1,074,258	-		MMP_RS05600	0.20	+1.0
1,074,267	-		MMP_RS05600	0.21	+0.4
1,074,268	+		MMP_RS05600	0.21	-1.3
1,074,365	-		MMP_RS05600	0.34	+1.3
1,074,464	-		MMP_RS05600	0.48	-0.2
1,074,464	-		MMP_RS05600	0.48	+1.0
1,074,464	-		MMP_RS05600	0.48	+1.2
1,074,464	-		MMP_RS05600	0.48	+0.1
1,074,465	+		MMP_RS05600	0.48	+0.4
1,074,465	+		MMP_RS05600	0.48	+1.6
1,074,466	-		MMP_RS05600	0.48	-0.1
1,074,466	-		MMP_RS05600	0.48	+0.3
1,074,466	-		MMP_RS05600	0.48	-0.8
1,074,466	-		MMP_RS05600	0.48	-2.0
1,074,466	-		MMP_RS05600	0.48	+0.5
1,074,467	+		MMP_RS05600	0.48	+0.3
1,074,467	+		MMP_RS05600	0.48	+0.3
1,074,467	+		MMP_RS05600	0.48	+0.7
1,074,467	+		MMP_RS05600	0.48	-2.0
1,074,467	+		MMP_RS05600	0.48	+0.5
1,074,488	-		MMP_RS05600	0.51	+0.8
1,074,489	+		MMP_RS05600	0.51	-0.2
1,074,492	-		MMP_RS05600	0.52	+0.4
1,074,492	-		MMP_RS05600	0.52	-0.2
1,074,493	+		MMP_RS05600	0.52	-2.8
1,074,524	+		MMP_RS05600	0.56	+0.2
1,074,526	-		MMP_RS05600	0.56	+1.2
1,074,526	-		MMP_RS05600	0.56	+1.3
1,074,532	-		MMP_RS05600	0.57	+0.6
1,074,532	-		MMP_RS05600	0.57	+0.4
1,074,532	-		MMP_RS05600	0.57	+0.1
1,074,532	-		MMP_RS05600	0.57	+1.2
1,074,532	-		MMP_RS05600	0.57	-0.3
1,074,558	-		MMP_RS05600	0.61	-0.4
1,074,558	-		MMP_RS05600	0.61	+0.7
1,074,559	+		MMP_RS05600	0.61	+0.5
1,074,562	-		MMP_RS05600	0.61	+1.4
1,074,562	-		MMP_RS05600	0.61	-0.1
1,074,563	+		MMP_RS05600	0.61	-2.2
1,074,564	-		MMP_RS05600	0.61	+1.2
1,074,565	+		MMP_RS05600	0.62	-1.8
1,074,629	-		MMP_RS05600	0.70	+1.9
1,074,634	+		MMP_RS05600	0.71	+0.7
1,074,634	+		MMP_RS05600	0.71	+0.8
1,074,657	-		MMP_RS05600	0.74	-0.5
1,074,658	+		MMP_RS05600	0.74	+0.1
1,074,669	+		MMP_RS05600	0.76	+0.1
1,074,672	+		MMP_RS05600	0.76	+1.1
1,074,693	-		MMP_RS05600	0.79	+1.6
1,074,784	+				-0.0
1,074,794	-				+1.1
1,074,797	+				-0.4
1,074,797	+				-0.4
1,074,845	+				+0.2
1,074,868	-				-0.3
1,074,870	-				-0.3
1,074,870	-				+0.6
1,074,870	-				+1.8
1,074,871	+				-0.5
1,074,871	+				-0.3
1,074,874	-				+0.2
1,074,874	-				+0.2
1,074,875	+				+1.8
1,074,879	-				-0.5
1,074,879	-				+0.9
1,074,898	-				-0.3
1,074,906	+				+0.7
1,074,949	+				+1.0
1,074,960	+				+0.6
1,074,964	+				-1.5
1,074,970	-				+1.3
1,074,970	-				-0.1
1,074,970	-				-0.1
1,074,970	-				+1.0
1,074,970	-				+0.5
1,074,971	+				+0.3
1,074,972	-				-0.9
1,074,992	-				-0.1
1,074,992	-				-0.5
1,074,993	+				+1.2
1,075,073	-				+1.5
1,075,077	-				-0.3
1,075,085	-				+0.6
1,075,088	-				-1.6
1,075,152	-		MMP_RS05605	0.11	+0.4
1,075,164	+		MMP_RS05605	0.11	-1.0
1,075,164	+		MMP_RS05605	0.11	-3.4
1,075,166	-		MMP_RS05605	0.12	-0.5
1,075,198	+		MMP_RS05605	0.13	+0.8
1,075,199	-		MMP_RS05605	0.13	-0.5
1,075,199	-		MMP_RS05605	0.13	-0.5
1,075,225	+		MMP_RS05605	0.15	-0.6
1,075,238	-		MMP_RS05605	0.16	+0.2
1,075,239	+		MMP_RS05605	0.16	-1.0
1,075,348	-		MMP_RS05605	0.22	-0.1
1,075,400	-		MMP_RS05605	0.25	-0.0
1,075,428	-		MMP_RS05605	0.26	+0.1
1,075,430	-		MMP_RS05605	0.26	-0.4
1,075,430	-		MMP_RS05605	0.26	-0.2
1,075,430	-		MMP_RS05605	0.26	+0.4
1,075,431	+		MMP_RS05605	0.26	-0.4
1,075,431	+		MMP_RS05605	0.26	+0.0
1,075,431	+		MMP_RS05605	0.26	-0.4
1,075,432	-		MMP_RS05605	0.26	-0.4
1,075,432	-		MMP_RS05605	0.26	+0.5
1,075,442	-		MMP_RS05605	0.27	-1.7
1,075,457	+		MMP_RS05605	0.28	-0.4
1,075,457	+		MMP_RS05605	0.28	-0.6
1,075,473	-		MMP_RS05605	0.29	-0.5
1,075,474	+		MMP_RS05605	0.29	+0.6
1,075,581	-		MMP_RS05605	0.35	-0.7
1,075,613	+		MMP_RS05605	0.37	+0.7
1,075,634	+		MMP_RS05605	0.38	+0.4
1,075,645	-		MMP_RS05605	0.38	-0.3
1,075,645	-		MMP_RS05605	0.38	+0.8
1,075,646	+		MMP_RS05605	0.38	-0.4
1,075,646	+		MMP_RS05605	0.38	+0.1
1,075,718	-		MMP_RS05605	0.42	-0.1
1,075,719	+		MMP_RS05605	0.42	+0.0
1,075,719	+		MMP_RS05605	0.42	-0.0
1,075,721	+		MMP_RS05605	0.43	+1.0
1,075,807	+		MMP_RS05605	0.47	-0.4
1,075,807	+		MMP_RS05605	0.47	-0.5
1,075,809	+		MMP_RS05605	0.47	+1.0
1,075,812	+		MMP_RS05605	0.48	+0.6
1,075,875	-		MMP_RS05605	0.51	+0.8
1,075,956	-		MMP_RS05605	0.56	-0.6
1,075,956	-		MMP_RS05605	0.56	+0.4
1,075,957	+		MMP_RS05605	0.56	-0.8
1,075,959	+		MMP_RS05605	0.56	-0.3
1,075,979	+		MMP_RS05605	0.57	-1.1
1,075,979	+		MMP_RS05605	0.57	-0.3
1,075,980	-		MMP_RS05605	0.57	-1.0
1,075,983	-		MMP_RS05605	0.57	+0.5
1,075,983	-		MMP_RS05605	0.57	+0.8
1,075,984	+		MMP_RS05605	0.57	+0.5
1,075,984	+		MMP_RS05605	0.57	+0.6
1,075,984	+		MMP_RS05605	0.57	+0.1
1,075,985	-		MMP_RS05605	0.57	-0.1
1,075,985	-		MMP_RS05605	0.57	-0.3
1,075,986	+		MMP_RS05605	0.57	-0.3
1,075,986	+		MMP_RS05605	0.57	-1.0
1,076,068	-		MMP_RS05605	0.62	-0.2
1,076,068	-		MMP_RS05605	0.62	-0.3
1,076,068	-		MMP_RS05605	0.62	-1.6
1,076,068	-		MMP_RS05605	0.62	+0.4
1,076,069	+		MMP_RS05605	0.62	-0.6
1,076,069	+		MMP_RS05605	0.62	+0.2
1,076,127	-		MMP_RS05605	0.65	+1.2
1,076,128	+		MMP_RS05605	0.65	-0.4
1,076,130	+		MMP_RS05605	0.65	+0.1
1,076,130	+		MMP_RS05605	0.65	+0.2
1,076,134	+		MMP_RS05605	0.66	+0.1
1,076,134	+		MMP_RS05605	0.66	-0.2
1,076,135	-		MMP_RS05605	0.66	-0.5
1,076,135	-		MMP_RS05605	0.66	-1.1
1,076,135	-		MMP_RS05605	0.66	+1.2
1,076,136	+		MMP_RS05605	0.66	-1.5
1,076,139	-		MMP_RS05605	0.66	+0.7
1,076,140	+		MMP_RS05605	0.66	+0.1
1,076,140	+		MMP_RS05605	0.66	+0.3
1,076,140	+		MMP_RS05605	0.66	-0.6
1,076,140	+		MMP_RS05605	0.66	-0.5
1,076,141	-		MMP_RS05605	0.66	+0.3
1,076,142	+		MMP_RS05605	0.66	-0.7
1,076,144	-		MMP_RS05605	0.66	+0.2
1,076,158	-		MMP_RS05605	0.67	-0.1
1,076,159	+		MMP_RS05605	0.67	+0.6
1,076,167	+		MMP_RS05605	0.67	-0.6
1,076,178	-		MMP_RS05605	0.68	-0.1
1,076,178	-		MMP_RS05605	0.68	-1.9
1,076,203	-		MMP_RS05605	0.69	-1.1
1,076,204	+		MMP_RS05605	0.69	-0.2
1,076,205	-		MMP_RS05605	0.70	-0.6
1,076,206	+		MMP_RS05605	0.70	-0.2
1,076,206	+		MMP_RS05605	0.70	+0.1
1,076,207	-		MMP_RS05605	0.70	-0.7
1,076,207	-		MMP_RS05605	0.70	-0.4
1,076,208	+		MMP_RS05605	0.70	-0.1
1,076,208	+		MMP_RS05605	0.70	-4.3
1,076,212	-		MMP_RS05605	0.70	-2.3
1,076,267	-		MMP_RS05605	0.73	+0.0
1,076,298	-		MMP_RS05605	0.75	-1.2
1,076,312	+		MMP_RS05605	0.75	-1.1
1,076,341	+		MMP_RS05605	0.77	-0.8
1,076,345	+		MMP_RS05605	0.77	-0.6
1,076,345	+		MMP_RS05605	0.77	-0.2
1,076,368	+		MMP_RS05605	0.79	-1.9
1,076,369	-		MMP_RS05605	0.79	-0.4
1,076,370	+		MMP_RS05605	0.79	-0.3
1,076,370	+		MMP_RS05605	0.79	-0.7
1,076,372	-		MMP_RS05605	0.79	-0.3
1,076,375	-		MMP_RS05605	0.79	+1.8
1,076,376	+		MMP_RS05605	0.79	-0.7
1,076,376	+		MMP_RS05605	0.79	-1.2
1,076,376	+		MMP_RS05605	0.79	-0.9
1,076,395	-		MMP_RS05605	0.80	-0.7
1,076,398	+		MMP_RS05605	0.80	+0.2
1,076,403	-		MMP_RS05605	0.81	-0.7
1,076,403	-		MMP_RS05605	0.81	+0.5
1,076,407	-		MMP_RS05605	0.81	-0.5
1,076,413	-		MMP_RS05605	0.81	+0.7
1,076,430	-		MMP_RS05605	0.82	-0.5
1,076,535	-		MMP_RS05605	0.88	+0.7
1,076,536	+		MMP_RS05605	0.88	+0.8
1,076,540	+		MMP_RS05605	0.88	-0.5
1,076,551	-		MMP_RS05605	0.89	-0.8
1,076,624	-				+0.2
1,076,624	-				-0.0
1,076,625	+				+0.3
1,076,626	-				+0.2
1,076,627	+				+0.3
1,076,628	-				-0.5
1,076,634	+				-2.4
1,076,725	+				+0.3
1,076,738	-				+0.9
1,076,740	-				+0.1
1,076,741	+				-0.5
1,076,797	-				+0.7
1,076,798	+				+0.0
1,076,798	+				-0.1
1,076,810	+				-0.3
1,076,813	-				+0.3
1,076,813	-				+0.8
1,076,814	+				+0.2
1,076,814	+				-0.5
1,076,819	+				+0.3
1,076,828	-		MMP_RS05610	0.11	-0.3
1,076,839	-		MMP_RS05610	0.12	+1.0
1,076,839	-		MMP_RS05610	0.12	+1.1
1,076,840	+		MMP_RS05610	0.12	-1.1
1,076,851	-		MMP_RS05610	0.14	+0.1
1,076,876	+		MMP_RS05610	0.18	-0.5
1,076,878	+		MMP_RS05610	0.18	+0.4
1,076,883	+		MMP_RS05610	0.19	+0.0
1,076,890	-		MMP_RS05610	0.20	-0.7
1,076,916	+		MMP_RS05610	0.24	+0.4
1,076,935	-		MMP_RS05610	0.27	+0.0
1,077,026	-		MMP_RS05610	0.40	+0.9
1,077,027	+		MMP_RS05610	0.40	+0.2
1,077,032	-		MMP_RS05610	0.41	+1.2
1,077,032	-		MMP_RS05610	0.41	-3.3
1,077,104	-		MMP_RS05610	0.52	-0.2
1,077,118	-		MMP_RS05610	0.54	-0.6
1,077,122	-		MMP_RS05610	0.54	-0.3
1,077,142	-		MMP_RS05610	0.57	-0.1
1,077,143	+		MMP_RS05610	0.57	-1.4
1,077,190	-		MMP_RS05610	0.64	+0.1
1,077,195	+		MMP_RS05610	0.65	-0.3
1,077,195	+		MMP_RS05610	0.65	-0.4
1,077,196	-		MMP_RS05610	0.65	-0.8
1,077,229	-		MMP_RS05610	0.70	-0.9
1,077,239	-		MMP_RS05610	0.72	-0.2
1,077,239	-		MMP_RS05610	0.72	-1.3
1,077,240	+		MMP_RS05610	0.72	-0.3
1,077,262	-		MMP_RS05610	0.75	-0.5
1,077,282	+		MMP_RS05610	0.78	+0.7
1,077,334	-		MMP_RS05610	0.86	-0.5
1,077,335	+		MMP_RS05610	0.86	-1.0
1,077,338	-		MMP_RS05610	0.86	+0.8
1,077,349	-		MMP_RS05610	0.88	-0.0
1,077,355	-		MMP_RS05610	0.89	-0.3
1,077,369	+				-0.7
1,077,369	+				-1.2
1,077,369	+				+0.4
1,077,369	+				-0.1
1,077,372	-				-1.9
1,077,373	+				-0.9
1,077,384	-				-0.8
1,077,385	+				-0.9
1,077,398	+				-2.4
1,077,401	+				+1.0
1,077,409	-				+0.2
1,077,476	+				-0.6
1,077,476	+				+0.7
1,077,485	-				-0.4
1,077,492	-				-0.1
1,077,493	+				-0.1
1,077,493	+				-0.6
1,077,496	+				+0.1
1,077,524	+				+0.5
1,077,559	-				+0.6
1,077,586	+		MMP_RS05615	0.12	+0.2
1,077,602	-		MMP_RS05615	0.14	+0.7
1,077,611	-		MMP_RS05615	0.15	-0.3
1,077,700	-		MMP_RS05615	0.24	+0.9
1,077,701	+		MMP_RS05615	0.24	-0.7
1,077,701	+		MMP_RS05615	0.24	+0.9
1,077,701	+		MMP_RS05615	0.24	+0.2
1,077,701	+		MMP_RS05615	0.24	+1.2
1,077,702	-		MMP_RS05615	0.24	+0.7
1,077,702	-		MMP_RS05615	0.24	-3.4
1,077,702	-		MMP_RS05615	0.24	+0.4
1,077,702	-		MMP_RS05615	0.24	+0.8
1,077,702	-		MMP_RS05615	0.24	-0.1
1,077,703	+		MMP_RS05615	0.25	+1.6
1,077,703	+		MMP_RS05615	0.25	+0.2
1,077,703	+		MMP_RS05615	0.25	+1.3
1,077,713	+		MMP_RS05615	0.26	+0.5