Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04930

Experiment: H2 N-free with 10mM D-glucosamine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 10mM D-glucosamine
915,505	+		MMJJ_RS04925	0.29	+0.9
915,572	-		MMJJ_RS04925	0.35	+0.1
915,604	-		MMJJ_RS04925	0.38	+1.0
915,645	+		MMJJ_RS04925	0.41	+0.5
915,665	+		MMJJ_RS04925	0.43	+0.6
915,665	+		MMJJ_RS04925	0.43	-1.1
915,676	-		MMJJ_RS04925	0.44	-1.2
915,766	-		MMJJ_RS04925	0.51	+0.6
915,766	-		MMJJ_RS04925	0.51	-0.6
915,766	-		MMJJ_RS04925	0.51	+2.2
915,766	-		MMJJ_RS04925	0.51	-0.4
915,767	+		MMJJ_RS04925	0.52	+0.1
915,770	-		MMJJ_RS04925	0.52	-0.0
915,770	-		MMJJ_RS04925	0.52	-0.4
915,802	-		MMJJ_RS04925	0.55	-0.0
915,803	+		MMJJ_RS04925	0.55	+1.5
915,815	+		MMJJ_RS04925	0.56	+0.2
915,829	-		MMJJ_RS04925	0.57	-1.0
915,830	+		MMJJ_RS04925	0.57	+0.3
915,844	-		MMJJ_RS04925	0.58	+0.2
915,961	-		MMJJ_RS04925	0.68	-0.1
915,971	-		MMJJ_RS04925	0.69	-1.2
915,971	-		MMJJ_RS04925	0.69	-0.9
915,971	-		MMJJ_RS04925	0.69	-0.4
915,972	+		MMJJ_RS04925	0.69	-0.4
915,972	+		MMJJ_RS04925	0.69	-0.8
915,973	-		MMJJ_RS04925	0.69	-0.5
915,973	-		MMJJ_RS04925	0.69	+0.6
915,976	-		MMJJ_RS04925	0.69	-0.9
915,977	+		MMJJ_RS04925	0.69	-0.4
915,985	-		MMJJ_RS04925	0.70	-0.8
915,994	-		MMJJ_RS04925	0.71	+0.5
915,994	-		MMJJ_RS04925	0.71	-0.4
915,994	-		MMJJ_RS04925	0.71	+0.4
915,994	-		MMJJ_RS04925	0.71	+0.9
915,995	+		MMJJ_RS04925	0.71	-0.9
915,995	+		MMJJ_RS04925	0.71	-1.3
915,998	-		MMJJ_RS04925	0.71	+0.8
915,999	+		MMJJ_RS04925	0.71	-0.1
916,048	+		MMJJ_RS04925	0.75	+0.9
916,048	+		MMJJ_RS04925	0.75	+0.0
916,057	-		MMJJ_RS04925	0.76	+0.2
916,060	-		MMJJ_RS04925	0.76	-0.2
916,063	-		MMJJ_RS04925	0.77	-0.2
916,081	-		MMJJ_RS04925	0.78	-0.8
916,081	-		MMJJ_RS04925	0.78	+0.5
916,082	+		MMJJ_RS04925	0.78	-0.4
916,085	-		MMJJ_RS04925	0.79	-0.8
916,196	-		MMJJ_RS04925	0.88	+0.6
916,207	-		MMJJ_RS04925	0.89	+1.2
916,207	-		MMJJ_RS04925	0.89	-1.3
916,207	-		MMJJ_RS04925	0.89	-0.0
916,271	-				-0.2
916,272	+				-0.4
916,374	-				+0.2
916,376	-				-2.6
916,492	-		MMJJ_RS04930	0.12	-3.3
916,492	-		MMJJ_RS04930	0.12	-4.2
916,493	+		MMJJ_RS04930	0.12	-3.9
916,493	+		MMJJ_RS04930	0.12	-2.5
916,495	+		MMJJ_RS04930	0.12	-2.7
916,495	+		MMJJ_RS04930	0.12	-2.1
916,495	+		MMJJ_RS04930	0.12	-0.4
916,505	-		MMJJ_RS04930	0.13	-3.1
916,550	+		MMJJ_RS04930	0.17	-2.2
916,675	-		MMJJ_RS04930	0.28	-2.5
916,738	-		MMJJ_RS04930	0.33	-3.4
916,738	-		MMJJ_RS04930	0.33	-3.1
916,864	-		MMJJ_RS04930	0.44	-2.0
916,865	+		MMJJ_RS04930	0.44	-3.9
916,865	+		MMJJ_RS04930	0.44	-2.0
916,870	+		MMJJ_RS04930	0.45	-1.4
916,959	-		MMJJ_RS04930	0.52	-3.4
916,996	-		MMJJ_RS04930	0.55	-3.2
916,996	-		MMJJ_RS04930	0.55	-1.1
916,996	-		MMJJ_RS04930	0.55	-2.5
916,997	+		MMJJ_RS04930	0.56	-3.8
917,003	+		MMJJ_RS04930	0.56	-2.8
917,015	+		MMJJ_RS04930	0.57	-0.4
917,015	+				+0.3
917,018	-		MMJJ_RS04930	0.57	-3.4
917,018	-		MMJJ_RS04930	0.57	-3.9
917,019	+		MMJJ_RS04930	0.57	-1.8
917,019	+		MMJJ_RS04930	0.57	-3.3
917,019	+		MMJJ_RS04930	0.57	-3.4
917,039	-		MMJJ_RS04930	0.59	-1.9
917,039	-		MMJJ_RS04930	0.59	-3.1
917,039	-		MMJJ_RS04930	0.59	-1.6
917,039	-		MMJJ_RS04930	0.59	-2.5
917,039	-		MMJJ_RS04930	0.59	-4.1
917,040	+		MMJJ_RS04930	0.59	-3.1
917,043	-				+0.3
917,044	+		MMJJ_RS04930	0.60	-4.3
917,044	+		MMJJ_RS04930	0.60	-3.2
917,044	+		MMJJ_RS04930	0.60	-1.7
917,053	-		MMJJ_RS04930	0.60	-4.8
917,053	-		MMJJ_RS04930	0.60	-4.3
917,108	+		MMJJ_RS04930	0.65	-0.1
917,117	-		MMJJ_RS04930	0.66	-1.7
917,117	-		MMJJ_RS04930	0.66	-3.4
917,118	+		MMJJ_RS04930	0.66	-3.6
917,118	+		MMJJ_RS04930	0.66	-2.1
917,154	-		MMJJ_RS04930	0.69	-1.8
917,156	-		MMJJ_RS04930	0.69	-2.2
917,208	-		MMJJ_RS04930	0.74	-3.2
917,209	+		MMJJ_RS04930	0.74	-4.0
917,220	-		MMJJ_RS04930	0.75	-1.3
917,221	+		MMJJ_RS04930	0.75	-3.5
917,354	+		MMJJ_RS04930	0.87	-3.9
917,476	-				-2.5
917,483	-				-2.8
917,484	+				-3.2
917,484	+				-1.1
917,521	-				-2.1
917,521	-				+4.4
917,528	-				-3.9
917,528	-				-0.0
917,528	-				-0.6
917,528	-				-2.4
917,529	+				-1.6
917,529	+				+0.9
917,530	-				-1.7
917,530	-				-0.0
917,531	+				-3.9
917,553	-				-2.0
917,553	-				-2.8
917,554	+				-1.1
917,554	+				-3.4
917,554	+				+0.1
917,554	+				-2.3
917,557	-				+1.3
917,557	-				-0.7
917,557	-				-0.1
917,558	+				+0.7
917,558	+				-1.3
917,558	+				+2.1
917,558	+				-1.1
917,558	+				+0.7
917,571	-				+0.8
917,572	+				+1.3
917,572	+				-0.1
917,581	-				+1.4
917,582	+				-1.3
917,592	+				-0.4
917,597	-				+0.0
917,597	-				+0.3
917,597	-				+1.4
917,597	-				-1.3
917,598	+				+1.1
917,598	+				+0.2
917,601	-				-0.2
917,601	-				-0.6
917,601	-				+0.8
917,602	+				+0.9
917,602	+				+0.6
917,602	+				-0.7
917,608	-				+0.9
917,617	-				+0.8
917,617	-				+0.1
917,617	-				+1.2
917,618	+				+1.1
917,618	+				-0.7
917,646	-				+1.2
917,646	-				+0.0
917,647	+				-0.6
917,647	+				+0.9
917,650	-				+1.4
917,651	+				+0.3
917,655	-				-0.8
917,656	+				+0.5
917,656	+				+0.7
917,656	+				-0.3
917,657	-				-1.4
917,657	-				-0.5
917,657	-				-0.8
917,658	+				-0.4
917,659	-				+1.7
917,659	-				-0.5
917,659	-				+1.3
917,660	+				-0.3
917,660	+				-0.8
917,660	+				+1.8
917,660	+				-0.9
917,660	+				-0.2
917,660	+				+1.0
917,681	+		MMJJ_RS04935	0.15	+1.9
917,715	-		MMJJ_RS04935	0.32	-0.2
917,716	+		MMJJ_RS04935	0.33	-0.8
917,722	-		MMJJ_RS04935	0.36	+1.4
917,744	+		MMJJ_RS04935	0.47	+0.8
917,796	-		MMJJ_RS04935	0.73	-0.1
917,796	-		MMJJ_RS04935	0.73	-1.0
917,797	+		MMJJ_RS04935	0.74	+1.2
917,805	-		MMJJ_RS04935	0.78	-0.1
917,805	-		MMJJ_RS04935	0.78	-0.1
917,847	+				+0.3
917,856	-				-0.9
917,856	-				+0.6
917,865	+				-0.3
917,865	+				+0.0
917,870	+				-1.2
917,870	+				-2.1
917,896	-				+2.0
917,897	+				-0.8
917,989	+		MMJJ_RS04940	0.20	+0.9
918,037	-		MMJJ_RS04940	0.29	-0.4
918,037	-		MMJJ_RS04940	0.29	-0.3
918,072	-		MMJJ_RS04940	0.35	+0.8
918,072	-		MMJJ_RS04940	0.35	+1.3
918,072	-		MMJJ_RS04940	0.35	+1.5
918,072	-		MMJJ_RS04940	0.35	-0.3
918,073	+		MMJJ_RS04940	0.35	+0.1
918,073	+		MMJJ_RS04940	0.35	-1.2
918,073	+		MMJJ_RS04940	0.35	-0.2
918,076	+		MMJJ_RS04940	0.36	-0.8
918,092	-		MMJJ_RS04940	0.39	-0.4
918,103	-		MMJJ_RS04940	0.41	+1.0
918,104	+		MMJJ_RS04940	0.41	-0.5
918,104	+		MMJJ_RS04940	0.41	-0.9
918,105	-		MMJJ_RS04940	0.41	-0.4
918,105	-		MMJJ_RS04940	0.41	-0.8
918,105	-		MMJJ_RS04940	0.41	-0.4
918,105	-		MMJJ_RS04940	0.41	-1.8
918,105	-		MMJJ_RS04940	0.41	+1.2
918,106	+		MMJJ_RS04940	0.41	-0.7
918,106	+				+3.7
918,141	+		MMJJ_RS04940	0.48	-0.5
918,183	+		MMJJ_RS04940	0.55	-1.2
918,227	-		MMJJ_RS04940	0.63	+1.0
918,228	+		MMJJ_RS04940	0.64	-2.1
918,293	-		MMJJ_RS04940	0.75	-0.8
918,293	-		MMJJ_RS04940	0.75	+1.1
918,328	-		MMJJ_RS04940	0.82	-0.2
918,329	+		MMJJ_RS04940	0.82	-1.5
918,347	+		MMJJ_RS04940	0.85	+0.4
918,366	+		MMJJ_RS04940	0.89	+1.0
918,415	-				+0.1
918,415	-				-0.4
918,415	-				-1.7
918,416	+				+0.8
918,446	+				-0.3
918,447	-				-1.3
918,448	+				+0.6
918,452	-				-0.3
918,452	-				-0.1
918,452	-				-0.1
918,452	-				-0.2
918,452	-				-0.9
918,453	+				+0.2
918,453	+				-0.0
918,453	+				-1.0
918,453	+				+0.8
918,453	+				-0.4
918,454	-				-0.7
918,454	-				+1.5
918,455	+				-0.9
918,455	+				+3.1
918,455	+				-0.2
918,455	+				+0.6
918,456	-				-0.4
918,458	-				-0.1
918,458	-				+0.1
918,459	+				-0.2
918,459	+				+0.9
918,467	-				+1.0
918,468	+				+0.8
918,468	+				+0.4
918,469	-				-0.9
918,469	-				-0.7
918,470	+				-0.8
918,470	+				+0.4
918,477	-				+0.3
918,478	+				+3.2
918,479	-				-2.9
918,488	-				-0.1
918,488	-				+2.7
918,489	+				-0.8
918,489	+				+0.6
918,493	-				-0.4
918,493	-				-1.8
918,493	-				+1.0
918,494	+				+2.8
918,495	-				+1.3
918,495	-				+0.4