Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00705

Experiment: H2 N-free with 10mM D-glucosamine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 10mM D-glucosamine
136,589	-		MMJJ_RS00690	0.86	-0.1
136,590	+		MMJJ_RS00690	0.86	-1.2
136,592	-		MMJJ_RS00690	0.86	-2.4
136,593	+		MMJJ_RS00690	0.86	-2.6
136,593	+		MMJJ_RS00690	0.86	-0.6
136,593	+		MMJJ_RS00690	0.86	-2.9
136,601	-		MMJJ_RS00690	0.86	-2.4
136,601	-		MMJJ_RS00690	0.86	-2.7
136,602	+		MMJJ_RS00690	0.86	-2.1
136,610	-		MMJJ_RS00690	0.87	-3.1
136,625	+		MMJJ_RS00690	0.88	-2.8
136,625	+		MMJJ_RS00690	0.88	-1.1
136,625	+		MMJJ_RS00690	0.88	-1.2
136,634	-		MMJJ_RS00690	0.89	-2.9
136,635	+		MMJJ_RS00690	0.89	-1.3
136,635	+		MMJJ_RS00690	0.89	+0.2
136,666	-				-1.8
136,688	+				-1.9
136,688	+				-1.0
136,690	-				-2.3
136,690	-				-4.2
136,691	+				-3.5
136,691	+				-0.4
136,691	+				-0.8
136,737	-				-3.0
136,738	+				-1.4
136,738	+				-0.7
136,738	+				-3.0
136,738	+				-3.5
136,762	-				-2.2
136,772	-				-2.8
136,772	-				-1.9
136,773	+				-2.1
136,773	+				-2.1
136,773	+				-2.9
136,819	+				-3.5
136,838	-				-1.9
136,839	+				-2.4
136,878	-				-1.9
136,889	-		MMJJ_RS00695	0.12	-2.0
136,889	-		MMJJ_RS00695	0.12	-2.7
136,890	+		MMJJ_RS00695	0.12	-2.3
136,905	-		MMJJ_RS00695	0.16	-3.1
136,906	+		MMJJ_RS00695	0.17	-3.9
136,906	+		MMJJ_RS00695	0.17	-1.7
136,940	-		MMJJ_RS00695	0.26	-2.9
136,941	+		MMJJ_RS00695	0.26	-3.7
136,945	+		MMJJ_RS00695	0.27	-4.3
136,952	-		MMJJ_RS00695	0.29	-2.9
136,952	-		MMJJ_RS00695	0.29	-3.8
136,952	-		MMJJ_RS00695	0.29	-2.0
136,952	-		MMJJ_RS00695	0.29	-1.7
136,965	-		MMJJ_RS00695	0.33	-2.4
136,965	-		MMJJ_RS00695	0.33	-2.1
136,995	-		MMJJ_RS00695	0.41	-1.8
136,995	-		MMJJ_RS00695	0.41	-2.4
136,995	-		MMJJ_RS00695	0.41	-2.4
136,996	+		MMJJ_RS00695	0.41	-4.2
137,001	-		MMJJ_RS00695	0.43	-2.2
137,020	-		MMJJ_RS00695	0.48	-1.8
137,020	-		MMJJ_RS00695	0.48	-0.7
137,021	+		MMJJ_RS00695	0.48	-3.3
137,021	+		MMJJ_RS00695	0.48	-2.7
137,021	+		MMJJ_RS00695	0.48	-1.7
137,021	+		MMJJ_RS00695	0.48	-2.3
137,021	+		MMJJ_RS00695	0.48	-4.7
137,021	+				+0.4
137,021	+		MMJJ_RS00695	0.48	-0.8
137,021	+		MMJJ_RS00695	0.48	-3.7
137,021	+		MMJJ_RS00695	0.48	-1.6
137,043	-		MMJJ_RS00695	0.54	-2.5
137,199	-				-4.2
137,200	+				-2.2
137,210	-				-3.4
137,210	-				-2.3
137,212	-				-1.8
137,213	+				-0.6
137,221	-				-2.2
137,221	-				-1.5
137,222	+				-2.0
137,223	-				-0.6
137,223	-				-0.8
137,224	+				-2.6
137,224	+				-4.2
137,251	-				-3.1
137,252	+		MMJJ_RS00700	0.10	-1.4
137,252	+		MMJJ_RS00700	0.10	-2.4
137,262	-		MMJJ_RS00700	0.13	-2.5
137,263	+		MMJJ_RS00700	0.14	-2.0
137,263	+		MMJJ_RS00700	0.14	-2.9
137,263	+		MMJJ_RS00700	0.14	-2.3
137,271	-		MMJJ_RS00700	0.16	-1.8
137,271	-		MMJJ_RS00700	0.16	-3.4
137,272	+		MMJJ_RS00700	0.16	-3.0
137,272	+		MMJJ_RS00700	0.16	-1.4
137,277	-		MMJJ_RS00700	0.18	-0.7
137,305	-		MMJJ_RS00700	0.27	+0.4
137,306	+		MMJJ_RS00700	0.27	-2.3
137,306	+		MMJJ_RS00700	0.27	-1.7
137,319	+		MMJJ_RS00700	0.31	-1.2
137,322	-		MMJJ_RS00700	0.32	-1.7
137,323	+		MMJJ_RS00700	0.32	-3.1
137,331	-		MMJJ_RS00700	0.35	-3.9
137,332	+		MMJJ_RS00700	0.35	-4.1
137,460	-		MMJJ_RS00700	0.75	-1.8
137,505	+		MMJJ_RS00700	0.90	-3.5
137,517	-				-2.5
137,564	+				-3.0
137,567	-				-3.4
137,568	+				-1.1
137,582	+				-1.9
137,586	-				-2.5
137,587	+				-1.6
137,616	-				-2.9
137,646	-				-3.1
137,690	+		MMJJ_RS00705	0.13	-2.0
137,711	-		MMJJ_RS00705	0.16	-3.1
137,711	-		MMJJ_RS00705	0.16	-3.1
137,712	+		MMJJ_RS00705	0.16	-1.7
137,712	+		MMJJ_RS00705	0.16	-3.7
137,720	+		MMJJ_RS00705	0.17	-0.8
137,720	+		MMJJ_RS00705	0.17	-1.6
137,788	+		MMJJ_RS00705	0.25	-2.5
137,820	-		MMJJ_RS00705	0.29	-3.1
137,820	-		MMJJ_RS00705	0.29	-3.8
137,821	+		MMJJ_RS00705	0.29	-3.0
137,823	-		MMJJ_RS00705	0.29	-2.1
137,823	-		MMJJ_RS00705	0.29	-1.7
137,824	+		MMJJ_RS00705	0.29	-2.3
137,842	+		MMJJ_RS00705	0.32	-1.9
137,849	-		MMJJ_RS00705	0.32	-2.6
137,878	+		MMJJ_RS00705	0.36	-3.8
137,959	+		MMJJ_RS00705	0.46	-2.3
138,015	-		MMJJ_RS00705	0.53	-2.4
138,016	+		MMJJ_RS00705	0.53	-2.1
138,016	+		MMJJ_RS00705	0.53	-2.2
138,016	+		MMJJ_RS00705	0.53	-2.6
138,016	+		MMJJ_RS00705	0.53	-3.3
138,016	+		MMJJ_RS00705	0.53	-1.9
138,150	-		MMJJ_RS00705	0.69	-2.6
138,150	-		MMJJ_RS00705	0.69	-2.1
138,159	-		MMJJ_RS00705	0.70	-2.0
138,160	+		MMJJ_RS00705	0.70	-0.6
138,198	+		MMJJ_RS00705	0.75	-1.3
138,222	-		MMJJ_RS00705	0.78	-0.7
138,227	-		MMJJ_RS00705	0.78	-1.7
138,228	+		MMJJ_RS00705	0.78	-2.7
138,228	+		MMJJ_RS00705	0.78	-1.6
138,240	-		MMJJ_RS00705	0.80	-2.5
138,252	+		MMJJ_RS00705	0.81	-1.3
138,272	-		MMJJ_RS00705	0.84	-2.2
138,403	+				-1.0
138,420	-				-0.9
138,420	-				-0.6
138,420	-				-1.5
138,420	-				-1.3
138,421	+				-2.4
138,421	+				-2.8
138,421	+				-1.7
138,421	+				-1.8
138,421	+				-3.3
138,421	+				-1.4
138,422	-				-3.3
138,422	-				-2.7
138,422	-				-2.8
138,422	-				-1.8
138,422	-				-0.8
138,423	+				-2.2
138,423	+				-3.0
138,423	+				-2.6
138,423	+				-2.1
138,424	-				+4.2
138,424	-				-0.9
138,424	-				-0.8
138,424	-				-1.7
138,424	-				-3.0
138,424	-				-1.7
138,425	+				-1.6
138,425	+				-2.8
138,425	+				-1.3
138,425	+				-1.5
138,425	+				-3.0
138,425	+				-3.2
138,425	+				-2.6
138,425	+				-1.8
138,425	+				-2.9
138,466	+				-2.8
138,493	+				-1.2
138,499	-				-1.0
138,499	-				-3.0
138,499	-				-3.4
138,499	-				-1.3
138,500	+				-2.7
138,500	+				-2.7
138,500	+				-3.0
138,504	-				+0.3
138,508	-				-1.4
138,511	-				-2.3
138,514	+				-2.3
138,652	-				+0.8
138,653	+				+0.6
138,653	+				-0.6
138,657	-				+1.0
138,657	-				+0.6
138,667	-				-0.7
138,672	-				-0.1
138,672	-				+0.5
138,672	-				-0.3
138,672	-				-1.9
138,672	-				+0.8
138,673	+				-0.3
138,673	+				-1.3
138,675	-				-0.7
138,681	-				-0.5
138,684	-				+0.4
138,684	-				+0.6
138,685	+				-1.2
138,693	-				+1.0
138,695	-				-0.7
138,695	-				-1.3
138,715	-				-0.3
138,715	-				+1.3
138,715	-				+0.7
138,716	+				+0.1
138,716	+				-0.4
138,716	+				+0.1
138,719	+				-1.3
138,719	+				+0.9
138,724	+				+0.3
138,795	-				-2.3
138,795	-				-0.2
138,795	-				+0.2
138,801	-		MMJJ_RS00710	0.10	-0.5
138,814	-		MMJJ_RS00710	0.13	+0.7
138,814	-		MMJJ_RS00710	0.13	+0.8
138,814	-		MMJJ_RS00710	0.13	+0.0
138,814	-		MMJJ_RS00710	0.13	-1.6
138,814	-		MMJJ_RS00710	0.13	+0.4
138,815	+		MMJJ_RS00710	0.13	-1.0
138,815	+		MMJJ_RS00710	0.13	-0.3
138,851	-		MMJJ_RS00710	0.21	-1.7
138,867	-				+1.4
138,867	-		MMJJ_RS00710	0.24	-0.5
138,868	+		MMJJ_RS00710	0.24	+2.5
138,868	+		MMJJ_RS00710	0.24	+0.6
138,868	+		MMJJ_RS00710	0.24	+0.2
138,873	-		MMJJ_RS00710	0.25	-1.4
138,874	+		MMJJ_RS00710	0.25	-0.3
138,874	+		MMJJ_RS00710	0.25	-0.6
138,874	+		MMJJ_RS00710	0.25	+0.1
138,874	+		MMJJ_RS00710	0.25	+0.6
138,919	-		MMJJ_RS00710	0.35	-1.0
138,947	-		MMJJ_RS00710	0.41	-0.7
138,947	-		MMJJ_RS00710	0.41	+0.2
138,952	+		MMJJ_RS00710	0.42	-1.7
138,982	-		MMJJ_RS00710	0.48	+0.7
138,982	-		MMJJ_RS00710	0.48	+0.5
138,983	+		MMJJ_RS00710	0.48	-1.5
139,001	+		MMJJ_RS00710	0.52	-0.2
139,078	+		MMJJ_RS00710	0.68	-0.0
139,082	+		MMJJ_RS00710	0.69	-1.2
139,096	+		MMJJ_RS00710	0.72	-0.1
139,151	+		MMJJ_RS00710	0.83	-0.3
139,151	+		MMJJ_RS00710	0.83	-1.3
139,152	-		MMJJ_RS00710	0.83	-1.3
139,153	+		MMJJ_RS00710	0.84	-1.3
139,153	+		MMJJ_RS00710	0.84	+0.2
139,156	-		MMJJ_RS00710	0.84	+0.8
139,157	+		MMJJ_RS00710	0.84	-0.9
139,172	-		MMJJ_RS00710	0.88	+0.1
139,172	-		MMJJ_RS00710	0.88	-3.3
139,172	-		MMJJ_RS00710	0.88	+0.3
139,172	-		MMJJ_RS00710	0.88	+1.0
139,173	+		MMJJ_RS00710	0.88	+0.5
139,173	+		MMJJ_RS00710	0.88	+1.0
139,186	+				-1.2
139,201	-				+0.4
139,201	-				-1.1
139,202	+				-1.2
139,203	-				-0.6
139,203	-				-1.8
139,203	-				-1.3
139,203	-				-1.2
139,203	-				-0.2
139,204	+				-1.1
139,204	+				+0.5
139,204	+				-0.3
139,204	+				+0.6
139,262	-				+0.4
139,262	-				-1.0
139,262	-				+0.7
139,263	+				-1.0
139,263	+				-0.6
139,263	+				-0.4
139,265	-				+0.7
139,265	-				+0.8
139,371	+		MMJJ_RS00715	0.18	+1.1
139,374	-		MMJJ_RS00715	0.18	+0.2
139,375	+		MMJJ_RS00715	0.18	-0.8
139,402	-		MMJJ_RS00715	0.23	-0.1