Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15285

Experiment: R2A with lithium chloride 15.625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with lithium chloride 15.625 mM
3,374,885	+		LRK54_RS15280	0.48	-2.4
3,374,885	+		LRK54_RS15280	0.48	+0.9
3,374,886	-		LRK54_RS15280	0.48	-0.4
3,374,886	-		LRK54_RS15280	0.48	-1.9
3,374,886	-		LRK54_RS15280	0.48	-0.0
3,374,886	-		LRK54_RS15280	0.48	-0.9
3,374,886	-		LRK54_RS15280	0.48	-1.1
3,374,886	-		LRK54_RS15280	0.48	-0.1
3,374,886	-		LRK54_RS15280	0.48	-0.1
3,374,886	-		LRK54_RS15280	0.48	-0.1
3,374,886	-		LRK54_RS15280	0.48	+0.9
3,374,886	-		LRK54_RS15280	0.48	+0.1
3,374,886	-		LRK54_RS15280	0.48	-1.6
3,374,886	-		LRK54_RS15280	0.48	+2.4
3,375,095	+		LRK54_RS15280	0.62	-0.8
3,375,095	+		LRK54_RS15280	0.62	+0.9
3,375,095	+		LRK54_RS15280	0.62	+0.6
3,375,095	+		LRK54_RS15280	0.62	+1.0
3,375,095	+		LRK54_RS15280	0.62	-2.1
3,375,095	+		LRK54_RS15280	0.62	+0.4
3,375,095	+		LRK54_RS15280	0.62	-0.1
3,375,095	+		LRK54_RS15280	0.62	-2.1
3,375,096	-		LRK54_RS15280	0.62	-0.4
3,375,096	-		LRK54_RS15280	0.62	-1.4
3,375,096	-		LRK54_RS15280	0.62	+0.4
3,375,096	-		LRK54_RS15280	0.62	-0.3
3,375,160	+		LRK54_RS15280	0.66	+0.0
3,375,242	+		LRK54_RS15280	0.71	+1.1
3,375,242	+		LRK54_RS15280	0.71	-0.1
3,375,242	+		LRK54_RS15280	0.71	-0.7
3,375,242	+		LRK54_RS15280	0.71	-0.9
3,375,242	+		LRK54_RS15280	0.71	-0.4
3,375,242	+		LRK54_RS15280	0.71	+0.6
3,375,242	+		LRK54_RS15280	0.71	-0.4
3,375,242	+		LRK54_RS15280	0.71	-0.4
3,375,242	+		LRK54_RS15280	0.71	-0.8
3,375,242	+		LRK54_RS15280	0.71	+1.1
3,375,242	+		LRK54_RS15280	0.71	-0.9
3,375,243	-		LRK54_RS15280	0.71	+0.6
3,375,243	-		LRK54_RS15280	0.71	+0.5
3,375,243	-		LRK54_RS15280	0.71	-0.9
3,375,243	-		LRK54_RS15280	0.71	+0.9
3,375,243	-		LRK54_RS15280	0.71	+0.6
3,375,243	-		LRK54_RS15280	0.71	-0.4
3,375,243	-		LRK54_RS15280	0.71	-0.8
3,375,243	-		LRK54_RS15280	0.71	+0.9
3,375,243	-		LRK54_RS15280	0.71	-0.8
3,375,243	-		LRK54_RS15280	0.71	-0.6
3,375,243	-		LRK54_RS15280	0.71	+1.0
3,375,243	-		LRK54_RS15280	0.71	+0.5
3,375,243	-		LRK54_RS15280	0.71	+0.9
3,375,243	-		LRK54_RS15280	0.71	-0.9
3,375,243	-		LRK54_RS15280	0.71	-0.6
3,375,243	-		LRK54_RS15280	0.71	+2.4
3,375,243	-		LRK54_RS15280	0.71	+0.4
3,375,359	+		LRK54_RS15280	0.79	+1.9
3,375,360	-		LRK54_RS15280	0.79	+0.3
3,375,360	-		LRK54_RS15280	0.79	+0.8
3,375,360	-		LRK54_RS15280	0.79	+0.9
3,375,360	-		LRK54_RS15280	0.79	-0.3
3,375,407	+		LRK54_RS15280	0.82	+0.2
3,375,407	+		LRK54_RS15280	0.82	-0.5
3,375,407	+		LRK54_RS15280	0.82	-1.5
3,375,407	+		LRK54_RS15280	0.82	+0.0
3,375,407	+		LRK54_RS15280	0.82	+0.4
3,375,407	+		LRK54_RS15280	0.82	-1.8
3,375,407	+		LRK54_RS15280	0.82	+1.9
3,375,407	+		LRK54_RS15280	0.82	-0.4
3,375,407	+		LRK54_RS15280	0.82	+1.0
3,375,407	+		LRK54_RS15280	0.82	-0.1
3,375,407	+		LRK54_RS15280	0.82	-0.2
3,375,407	+		LRK54_RS15280	0.82	+0.6
3,375,407	+		LRK54_RS15280	0.82	-0.0
3,375,407	+		LRK54_RS15280	0.82	-1.6
3,375,407	+		LRK54_RS15280	0.82	-2.1
3,375,407	+		LRK54_RS15280	0.82	+0.6
3,375,407	+		LRK54_RS15280	0.82	+1.2
3,375,407	+		LRK54_RS15280	0.82	-2.1
3,375,407	+		LRK54_RS15280	0.82	+1.5
3,375,407	+		LRK54_RS15280	0.82	+0.0
3,375,407	+		LRK54_RS15280	0.82	+0.4
3,375,407	+		LRK54_RS15280	0.82	-1.3
3,375,407	+		LRK54_RS15280	0.82	+0.8
3,375,407	+		LRK54_RS15280	0.82	+1.6
3,375,407	+		LRK54_RS15280	0.82	-0.8
3,375,407	+		LRK54_RS15280	0.82	+0.2
3,375,407	+		LRK54_RS15280	0.82	-0.6
3,375,407	+		LRK54_RS15280	0.82	-0.4
3,375,407	+		LRK54_RS15280	0.82	-1.6
3,375,407	+		LRK54_RS15280	0.82	+0.3
3,375,407	+		LRK54_RS15280	0.82	-0.1
3,375,407	+		LRK54_RS15280	0.82	+0.2
3,375,407	+		LRK54_RS15280	0.82	-1.2
3,375,407	+		LRK54_RS15280	0.82	-0.1
3,375,407	+		LRK54_RS15280	0.82	-1.4
3,375,407	+		LRK54_RS15280	0.82	+0.3
3,375,407	+		LRK54_RS15280	0.82	+0.0
3,375,407	+		LRK54_RS15280	0.82	+0.7
3,375,407	+		LRK54_RS15280	0.82	+0.1
3,375,407	+		LRK54_RS15280	0.82	-0.6
3,375,407	+		LRK54_RS15280	0.82	+0.2
3,375,407	+		LRK54_RS15280	0.82	-0.1
3,375,407	+		LRK54_RS15280	0.82	+0.8
3,375,407	+		LRK54_RS15280	0.82	+0.9
3,375,407	+		LRK54_RS15280	0.82	-0.4
3,375,407	+		LRK54_RS15280	0.82	-1.9
3,375,407	+		LRK54_RS15280	0.82	-0.0
3,375,407	+		LRK54_RS15280	0.82	+0.3
3,375,407	+		LRK54_RS15280	0.82	-0.1
3,375,407	+		LRK54_RS15280	0.82	+1.3
3,375,407	+		LRK54_RS15280	0.82	+0.5
3,375,407	+		LRK54_RS15280	0.82	-1.1
3,375,407	+		LRK54_RS15280	0.82	+1.1
3,375,407	+		LRK54_RS15280	0.82	-0.7
3,375,407	+		LRK54_RS15280	0.82	-2.1
3,375,407	+		LRK54_RS15280	0.82	-2.7
3,375,408	-		LRK54_RS15280	0.82	+0.5
3,375,408	-		LRK54_RS15280	0.82	-1.1
3,375,408	-		LRK54_RS15280	0.82	+1.1
3,375,408	-		LRK54_RS15280	0.82	-0.3
3,375,408	-		LRK54_RS15280	0.82	-0.2
3,375,408	-		LRK54_RS15280	0.82	+0.4
3,375,408	-		LRK54_RS15280	0.82	-1.5
3,375,408	-		LRK54_RS15280	0.82	+0.1
3,375,408	-		LRK54_RS15280	0.82	+0.2
3,375,408	-		LRK54_RS15280	0.82	+0.4
3,375,408	-		LRK54_RS15280	0.82	-0.4
3,375,408	-		LRK54_RS15280	0.82	-0.1
3,375,408	-		LRK54_RS15280	0.82	-0.5
3,375,408	-		LRK54_RS15280	0.82	+0.4
3,375,408	-		LRK54_RS15280	0.82	-0.0
3,375,408	-		LRK54_RS15280	0.82	+0.5
3,375,408	-		LRK54_RS15280	0.82	+0.9
3,375,408	-		LRK54_RS15280	0.82	-0.6
3,375,408	-		LRK54_RS15280	0.82	-0.8
3,375,408	-		LRK54_RS15280	0.82	-0.9
3,375,408	-		LRK54_RS15280	0.82	-0.5
3,375,408	-		LRK54_RS15280	0.82	-1.8
3,375,408	-		LRK54_RS15280	0.82	+1.5
3,375,408	-		LRK54_RS15280	0.82	-0.1
3,375,408	-		LRK54_RS15280	0.82	-1.7
3,375,408	-		LRK54_RS15280	0.82	+0.0
3,375,408	-		LRK54_RS15280	0.82	-0.0
3,375,408	-		LRK54_RS15280	0.82	-2.1
3,375,408	-		LRK54_RS15280	0.82	-0.1
3,375,408	-		LRK54_RS15280	0.82	-0.9
3,375,408	-		LRK54_RS15280	0.82	+1.2
3,375,408	-		LRK54_RS15280	0.82	+0.8
3,375,408	-		LRK54_RS15280	0.82	+0.0
3,375,408	-		LRK54_RS15280	0.82	+0.6
3,375,408	-		LRK54_RS15280	0.82	-1.0
3,375,408	-		LRK54_RS15280	0.82	+0.9
3,375,408	-		LRK54_RS15280	0.82	-0.5
3,375,408	-		LRK54_RS15280	0.82	+0.1
3,375,408	-		LRK54_RS15280	0.82	-0.1
3,375,408	-		LRK54_RS15280	0.82	-0.6
3,375,408	-		LRK54_RS15280	0.82	+0.9
3,375,408	-		LRK54_RS15280	0.82	-0.8
3,375,408	-		LRK54_RS15280	0.82	-0.8
3,375,408	-		LRK54_RS15280	0.82	-0.1
3,375,408	-		LRK54_RS15280	0.82	+1.9
3,375,408	-		LRK54_RS15280	0.82	+0.5
3,375,410	+		LRK54_RS15280	0.82	-0.4
3,375,410	+		LRK54_RS15280	0.82	-0.9
3,375,410	+		LRK54_RS15280	0.82	-0.2
3,375,410	+		LRK54_RS15280	0.82	+0.6
3,375,410	+		LRK54_RS15280	0.82	-2.9
3,375,410	+		LRK54_RS15280	0.82	+1.1
3,375,410	+		LRK54_RS15280	0.82	-0.5
3,375,410	+		LRK54_RS15280	0.82	+0.6
3,375,410	+		LRK54_RS15280	0.82	+1.2
3,375,410	+		LRK54_RS15280	0.82	+0.4
3,375,410	+		LRK54_RS15280	0.82	-1.1
3,375,410	+		LRK54_RS15280	0.82	+0.1
3,375,411	-		LRK54_RS15280	0.82	-0.3
3,375,411	-		LRK54_RS15280	0.82	+0.7
3,375,411	-		LRK54_RS15280	0.82	+1.3
3,375,411	-		LRK54_RS15280	0.82	-0.9
3,375,411	-		LRK54_RS15280	0.82	-1.0
3,375,411	-		LRK54_RS15280	0.82	-1.4
3,375,411	-		LRK54_RS15280	0.82	+1.5
3,375,411	-		LRK54_RS15280	0.82	+1.5
3,375,411	-		LRK54_RS15280	0.82	-0.2
3,375,411	-		LRK54_RS15280	0.82	-1.3
3,375,411	-		LRK54_RS15280	0.82	+0.8
3,375,411	-		LRK54_RS15280	0.82	-1.2
3,375,411	-		LRK54_RS15280	0.82	+1.5
3,375,411	-		LRK54_RS15280	0.82	-0.2
3,375,411	-		LRK54_RS15280	0.82	+0.4
3,375,411	-		LRK54_RS15280	0.82	-0.6
3,375,411	-		LRK54_RS15280	0.82	+0.5
3,375,411	-		LRK54_RS15280	0.82	+0.9
3,375,411	-		LRK54_RS15280	0.82	+0.0
3,375,411	-		LRK54_RS15280	0.82	-2.4
3,375,411	-		LRK54_RS15280	0.82	-0.6
3,375,411	-		LRK54_RS15280	0.82	-0.1
3,375,411	-		LRK54_RS15280	0.82	-0.2
3,375,411	-		LRK54_RS15280	0.82	+0.4
3,375,411	-		LRK54_RS15280	0.82	+0.0
3,375,411	-		LRK54_RS15280	0.82	+0.2
3,375,524	+		LRK54_RS15280	0.90	+0.5
3,375,525	-		LRK54_RS15280	0.90	+1.7
3,375,525	-		LRK54_RS15280	0.90	-0.2
3,375,525	-		LRK54_RS15280	0.90	+1.2
3,375,525	-		LRK54_RS15280	0.90	-0.3
3,375,716	+				-0.6
3,375,717	-				-1.4
3,375,737	+				+0.2
3,375,737	+				+2.0
3,375,738	-				+0.1
3,375,738	-				-0.9
3,375,738	-				+0.1
3,375,738	-				-0.1
3,375,738	-				+0.2
3,375,738	-				+0.4
3,375,738	-				-0.8
3,375,738	-				+0.9
3,375,738	-				-0.5
3,375,824	+				-1.1
3,375,824	+				-0.1
3,375,824	+				-0.5
3,375,824	+				-0.9
3,375,824	+				+1.3
3,375,824	+				+0.4
3,375,824	+				-1.3
3,375,824	+				-1.1
3,375,824	+				-1.9
3,375,824	+				-0.8
3,375,824	+				-0.4
3,375,825	-				-1.9
3,375,825	-				-1.4
3,375,825	-				-1.3
3,375,825	-				-0.6
3,375,825	-				-0.7
3,375,825	-				-2.0
3,375,825	-				-0.4
3,375,825	-				+2.2
3,375,825	-				-0.2
3,375,825	-				-1.2
3,375,825	-				-1.1
3,375,935	+		LRK54_RS15285	0.10	+0.8
3,375,935	+		LRK54_RS15285	0.10	-1.1
3,375,935	+		LRK54_RS15285	0.10	-0.1
3,375,935	+		LRK54_RS15285	0.10	+0.9
3,375,935	+		LRK54_RS15285	0.10	-1.1
3,375,935	+		LRK54_RS15285	0.10	+0.9
3,375,935	+		LRK54_RS15285	0.10	-2.1
3,375,935	+		LRK54_RS15285	0.10	-2.0
3,375,935	+		LRK54_RS15285	0.10	-0.9
3,375,935	+		LRK54_RS15285	0.10	-2.8
3,375,935	+		LRK54_RS15285	0.10	-1.2
3,375,935	+		LRK54_RS15285	0.10	-1.1
3,375,935	+		LRK54_RS15285	0.10	-2.9
3,375,936	-		LRK54_RS15285	0.10	+0.0
3,375,936	-		LRK54_RS15285	0.10	-0.4
3,375,936	-		LRK54_RS15285	0.10	-1.9
3,375,936	-		LRK54_RS15285	0.10	-1.1
3,375,936	-		LRK54_RS15285	0.10	+0.3
3,375,936	-				-0.4
3,375,936	-		LRK54_RS15285	0.10	-2.0
3,375,936	-		LRK54_RS15285	0.10	-0.6
3,375,936	-		LRK54_RS15285	0.10	+1.2
3,375,936	-		LRK54_RS15285	0.10	-0.3
3,375,936	-		LRK54_RS15285	0.10	+0.4
3,375,986	+		LRK54_RS15285	0.15	-1.8
3,375,986	+		LRK54_RS15285	0.15	+0.3
3,375,986	+		LRK54_RS15285	0.15	-1.9
3,375,986	+		LRK54_RS15285	0.15	-0.6
3,375,986	+		LRK54_RS15285	0.15	-1.9
3,375,986	+		LRK54_RS15285	0.15	-0.5
3,375,986	+		LRK54_RS15285	0.15	-0.1
3,375,986	+		LRK54_RS15285	0.15	-2.5
3,375,986	+		LRK54_RS15285	0.15	-2.0
3,375,986	+		LRK54_RS15285	0.15	-1.9
3,375,986	+		LRK54_RS15285	0.15	+0.0
3,375,986	+		LRK54_RS15285	0.15	-2.5
3,375,986	+		LRK54_RS15285	0.15	-1.4
3,375,986	+		LRK54_RS15285	0.15	-1.2
3,375,986	+		LRK54_RS15285	0.15	-0.9
3,375,986	+		LRK54_RS15285	0.15	-2.8
3,375,986	+		LRK54_RS15285	0.15	+0.4
3,375,986	+		LRK54_RS15285	0.15	-1.1
3,375,986	+		LRK54_RS15285	0.15	-0.9
3,375,986	+		LRK54_RS15285	0.15	-1.0
3,375,986	+		LRK54_RS15285	0.15	+0.4
3,375,987	-		LRK54_RS15285	0.15	-0.5
3,375,987	-		LRK54_RS15285	0.15	+0.9
3,375,987	-		LRK54_RS15285	0.15	+0.2
3,375,987	-		LRK54_RS15285	0.15	+1.9
3,375,987	-		LRK54_RS15285	0.15	+1.5
3,375,987	-		LRK54_RS15285	0.15	-2.2
3,375,987	-		LRK54_RS15285	0.15	+0.4
3,375,987	-		LRK54_RS15285	0.15	-1.2
3,375,987	-		LRK54_RS15285	0.15	-1.2
3,375,987	-		LRK54_RS15285	0.15	-1.9
3,375,989	+		LRK54_RS15285	0.15	-0.2
3,375,989	+		LRK54_RS15285	0.15	+1.9
3,375,989	+		LRK54_RS15285	0.15	-0.3
3,375,989	+		LRK54_RS15285	0.15	-1.8
3,375,989	+		LRK54_RS15285	0.15	-0.1
3,375,989	+		LRK54_RS15285	0.15	-2.1
3,375,989	+		LRK54_RS15285	0.15	-2.2
3,375,989	+		LRK54_RS15285	0.15	+0.5
3,375,989	+		LRK54_RS15285	0.15	+1.4
3,375,989	+		LRK54_RS15285	0.15	-0.4
3,375,989	+		LRK54_RS15285	0.15	-1.0
3,375,989	+		LRK54_RS15285	0.15	-1.4
3,375,989	+		LRK54_RS15285	0.15	-0.3
3,375,990	-		LRK54_RS15285	0.15	+0.7
3,375,990	-		LRK54_RS15285	0.15	-1.1
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3,375,990	-		LRK54_RS15285	0.15	-1.9
3,375,990	-		LRK54_RS15285	0.15	-2.4
3,375,990	-		LRK54_RS15285	0.15	-2.1
3,375,990	-		LRK54_RS15285	0.15	-1.6
3,375,990	-		LRK54_RS15285	0.15	-0.9
3,375,990	-		LRK54_RS15285	0.15	+0.4
3,375,990	-		LRK54_RS15285	0.15	-1.1
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3,375,990	-		LRK54_RS15285	0.15	-0.6
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3,375,990	-		LRK54_RS15285	0.15	-0.6
3,375,990	-		LRK54_RS15285	0.15	-2.7
3,375,990	-		LRK54_RS15285	0.15	-1.1
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3,375,990	-		LRK54_RS15285	0.15	+0.7
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3,376,028	+		LRK54_RS15285	0.19	-2.8
3,376,028	+		LRK54_RS15285	0.19	-1.4
3,376,028	+		LRK54_RS15285	0.19	-1.2
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3,376,079	+		LRK54_RS15285	0.23	-1.1
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3,376,080	-		LRK54_RS15285	0.23	-1.9
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3,376,229	+		LRK54_RS15285	0.37	-1.2
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3,376,229	+		LRK54_RS15285	0.37	-2.3
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3,376,229	+		LRK54_RS15285	0.37	-1.7
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3,376,230	-		LRK54_RS15285	0.37	-1.1
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3,376,250	+		LRK54_RS15285	0.39	-1.5
3,376,250	+		LRK54_RS15285	0.39	-1.5
3,376,250	+		LRK54_RS15285	0.39	-0.9
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3,376,251	-		LRK54_RS15285	0.39	-1.8
3,376,251	-		LRK54_RS15285	0.39	+1.1
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3,376,403	+		LRK54_RS15285	0.53	+2.4
3,376,403	+		LRK54_RS15285	0.53	-1.7
3,376,404	-		LRK54_RS15285	0.53	-1.9
3,376,404	-		LRK54_RS15285	0.53	-1.1
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3,376,404	-		LRK54_RS15285	0.53	-2.0
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3,376,408	+		LRK54_RS15285	0.53	-2.1
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3,376,409	+		LRK54_RS15285	0.53	-2.0
3,376,409	+		LRK54_RS15285	0.53	-0.1
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3,376,409	+		LRK54_RS15285	0.53	-2.8
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3,376,409	+		LRK54_RS15285	0.53	-2.1
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3,376,409	+		LRK54_RS15285	0.53	-2.1
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3,376,410	-		LRK54_RS15285	0.53	-1.1
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3,376,410	-		LRK54_RS15285	0.53	-0.1
3,376,410	-		LRK54_RS15285	0.53	-2.9
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3,376,410	-		LRK54_RS15285	0.53	-1.1
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3,376,410	-		LRK54_RS15285	0.53	-1.1
3,376,410	-		LRK54_RS15285	0.53	-2.5
3,376,410	-		LRK54_RS15285	0.53	+0.9
3,376,410	-		LRK54_RS15285	0.53	-2.1
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3,376,410	-		LRK54_RS15285	0.53	-1.2
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3,376,410	-		LRK54_RS15285	0.53	-0.1
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3,376,535	+		LRK54_RS15285	0.64	-0.5
3,376,535	+		LRK54_RS15285	0.64	-1.4
3,376,535	+		LRK54_RS15285	0.64	-2.3
3,376,535	+		LRK54_RS15285	0.64	-1.8
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3,377,426	-		LRK54_RS15290	0.81	-2.1
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