Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08135

Experiment: R2A with lithium chloride 15.625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with lithium chloride 15.625 mM
1,780,727	+		LRK54_RS08130	0.40	+1.4
1,780,733	+		LRK54_RS08130	0.41	+1.7
1,780,733	+		LRK54_RS08130	0.41	-0.1
1,780,733	+		LRK54_RS08130	0.41	-0.2
1,780,733	+		LRK54_RS08130	0.41	-0.4
1,780,733	+		LRK54_RS08130	0.41	+1.1
1,780,733	+		LRK54_RS08130	0.41	-0.4
1,780,733	+		LRK54_RS08130	0.41	+1.2
1,780,733	+		LRK54_RS08130	0.41	+0.8
1,780,733	+		LRK54_RS08130	0.41	-0.1
1,780,733	+		LRK54_RS08130	0.41	-0.1
1,780,733	+		LRK54_RS08130	0.41	+1.9
1,780,733	+		LRK54_RS08130	0.41	+1.0
1,780,733	+		LRK54_RS08130	0.41	-1.2
1,780,733	+		LRK54_RS08130	0.41	+0.0
1,780,733	+		LRK54_RS08130	0.41	-0.1
1,780,733	+		LRK54_RS08130	0.41	-0.3
1,780,733	+		LRK54_RS08130	0.41	+0.5
1,780,733	+		LRK54_RS08130	0.41	+2.3
1,780,733	+		LRK54_RS08130	0.41	-0.8
1,780,733	+		LRK54_RS08130	0.41	+0.8
1,780,733	+		LRK54_RS08130	0.41	+0.9
1,780,733	+		LRK54_RS08130	0.41	+0.3
1,780,733	+		LRK54_RS08130	0.41	+0.5
1,780,733	+		LRK54_RS08130	0.41	+0.5
1,780,733	+		LRK54_RS08130	0.41	+0.8
1,780,733	+		LRK54_RS08130	0.41	+1.1
1,780,733	+		LRK54_RS08130	0.41	-1.1
1,780,733	+		LRK54_RS08130	0.41	+0.3
1,780,733	+		LRK54_RS08130	0.41	+0.9
1,780,733	+		LRK54_RS08130	0.41	+0.4
1,780,733	+		LRK54_RS08130	0.41	-0.2
1,780,733	+		LRK54_RS08130	0.41	+1.0
1,780,733	+		LRK54_RS08130	0.41	+0.4
1,780,733	+		LRK54_RS08130	0.41	+1.4
1,780,733	+		LRK54_RS08130	0.41	-0.4
1,780,733	+		LRK54_RS08130	0.41	+2.5
1,780,733	+		LRK54_RS08130	0.41	-1.0
1,780,733	+		LRK54_RS08130	0.41	+0.1
1,780,733	+		LRK54_RS08130	0.41	+0.5
1,780,733	+		LRK54_RS08130	0.41	-1.4
1,780,733	+		LRK54_RS08130	0.41	+0.7
1,780,733	+		LRK54_RS08130	0.41	-0.5
1,780,733	+		LRK54_RS08130	0.41	+0.9
1,780,733	+		LRK54_RS08130	0.41	-1.0
1,780,733	+		LRK54_RS08130	0.41	+0.0
1,780,733	+		LRK54_RS08130	0.41	-0.7
1,780,734	-		LRK54_RS08130	0.41	+0.9
1,780,734	-		LRK54_RS08130	0.41	+0.3
1,780,734	-		LRK54_RS08130	0.41	+1.5
1,780,734	-		LRK54_RS08130	0.41	-0.1
1,780,734	-		LRK54_RS08130	0.41	+0.5
1,780,734	-		LRK54_RS08130	0.41	+0.1
1,780,734	-		LRK54_RS08130	0.41	+1.3
1,780,734	-		LRK54_RS08130	0.41	+0.7
1,780,734	-		LRK54_RS08130	0.41	-1.2
1,780,734	-		LRK54_RS08130	0.41	+0.0
1,780,734	-		LRK54_RS08130	0.41	+1.1
1,780,734	-		LRK54_RS08130	0.41	+0.2
1,780,734	-		LRK54_RS08130	0.41	-0.7
1,780,734	-		LRK54_RS08130	0.41	+0.2
1,780,734	-		LRK54_RS08130	0.41	-1.5
1,780,734	-		LRK54_RS08130	0.41	+1.4
1,780,734	-		LRK54_RS08130	0.41	+1.8
1,780,734	-		LRK54_RS08130	0.41	-0.1
1,780,734	-		LRK54_RS08130	0.41	-1.5
1,780,734	-		LRK54_RS08130	0.41	+1.1
1,780,734	-		LRK54_RS08130	0.41	-0.7
1,780,734	-		LRK54_RS08130	0.41	+1.1
1,780,734	-		LRK54_RS08130	0.41	+0.4
1,780,734	-		LRK54_RS08130	0.41	+0.8
1,780,734	-		LRK54_RS08130	0.41	+0.8
1,780,734	-		LRK54_RS08130	0.41	+1.5
1,780,734	-		LRK54_RS08130	0.41	-0.2
1,780,734	-		LRK54_RS08130	0.41	-0.7
1,780,734	-		LRK54_RS08130	0.41	-0.3
1,780,734	-		LRK54_RS08130	0.41	+0.8
1,780,734	-		LRK54_RS08130	0.41	+0.3
1,780,734	-		LRK54_RS08130	0.41	-0.8
1,780,734	-		LRK54_RS08130	0.41	-0.2
1,780,734	-		LRK54_RS08130	0.41	+0.1
1,780,734	-		LRK54_RS08130	0.41	+0.8
1,780,734	-		LRK54_RS08130	0.41	+1.2
1,780,734	-		LRK54_RS08130	0.41	-1.6
1,780,734	-		LRK54_RS08130	0.41	-0.2
1,780,734	-		LRK54_RS08130	0.41	+1.3
1,780,734	-		LRK54_RS08130	0.41	-0.1
1,780,734	-		LRK54_RS08130	0.41	+0.4
1,780,734	-		LRK54_RS08130	0.41	+0.6
1,780,734	-		LRK54_RS08130	0.41	+0.7
1,780,734	-		LRK54_RS08130	0.41	-0.3
1,780,734	-		LRK54_RS08130	0.41	+0.9
1,780,734	-		LRK54_RS08130	0.41	+0.3
1,780,784	+		LRK54_RS08130	0.46	-1.8
1,780,784	+		LRK54_RS08130	0.46	-1.4
1,780,784	+		LRK54_RS08130	0.46	+0.9
1,780,784	+		LRK54_RS08130	0.46	-1.9
1,780,784	+		LRK54_RS08130	0.46	-0.2
1,780,784	+		LRK54_RS08130	0.46	-0.4
1,780,784	+		LRK54_RS08130	0.46	+1.2
1,780,785	-		LRK54_RS08130	0.46	-1.2
1,780,785	-		LRK54_RS08130	0.46	-0.6
1,780,785	-		LRK54_RS08130	0.46	+0.2
1,780,785	-		LRK54_RS08130	0.46	+1.2
1,780,796	+		LRK54_RS08130	0.47	+0.3
1,780,796	+		LRK54_RS08130	0.47	-1.0
1,780,796	+		LRK54_RS08130	0.47	-1.2
1,780,796	+		LRK54_RS08130	0.47	-0.1
1,780,797	-		LRK54_RS08130	0.47	+0.0
1,780,797	-		LRK54_RS08130	0.47	+0.8
1,780,797	-		LRK54_RS08130	0.47	+1.2
1,780,797	-		LRK54_RS08130	0.47	+1.1
1,780,797	-		LRK54_RS08130	0.47	+1.4
1,780,829	+		LRK54_RS08130	0.51	-1.1
1,780,829	+		LRK54_RS08130	0.51	-0.1
1,781,350	+				-0.5
1,781,350	+				-0.2
1,781,350	+				+0.1
1,781,350	+				-0.4
1,781,350	+				-0.7
1,781,350	+				-0.1
1,781,350	+				-2.4
1,781,350	+				-0.9
1,781,350	+				+0.8
1,781,350	+				+1.8
1,781,350	+				-1.6
1,781,350	+				-0.5
1,781,350	+				-0.1
1,781,350	+				-0.1
1,781,351	-				+0.3
1,781,351	-				+0.4
1,781,351	-				+0.3
1,781,351	-				+0.3
1,781,351	-				+0.2
1,781,351	-				+0.8
1,781,351	-				+0.1
1,781,351	-				-0.1
1,781,351	-				-0.2
1,781,351	-				+0.9
1,781,351	-				-0.4
1,781,351	-				+0.1
1,781,351	-				+0.0
1,781,351	-				+0.6
1,781,351	-				-0.2
1,781,351	-				+1.1
1,781,351	-				+2.2
1,781,351	-				+0.5
1,781,351	-				+0.3
1,781,351	-				-0.8
1,781,351	-				+0.7
1,781,351	-				-1.7
1,781,351	-				+0.5
1,781,385	+				+0.9
1,781,385	+				-1.7
1,781,385	+				-2.5
1,781,386	-				-0.4
1,781,391	+				-3.0
1,781,391	+				-2.5
1,781,391	+				-0.9
1,781,392	-				-0.6
1,781,392	-				-0.9
1,781,392	-				-1.5
1,781,392	-				-0.3
1,781,392	-				+0.9
1,781,752	+		LRK54_RS08135	0.24	+1.0
1,781,752	+		LRK54_RS08135	0.24	+0.1
1,782,082	+		LRK54_RS08135	0.50	-0.6
1,782,082	+		LRK54_RS08135	0.50	-0.1
1,782,082	+		LRK54_RS08135	0.50	-0.3
1,782,082	+		LRK54_RS08135	0.50	-2.0
1,782,082	+		LRK54_RS08135	0.50	+2.9
1,782,082	+		LRK54_RS08135	0.50	+1.3
1,782,082	+		LRK54_RS08135	0.50	+0.1
1,782,082	+		LRK54_RS08135	0.50	-0.7
1,782,082	+		LRK54_RS08135	0.50	-0.0
1,782,082	+		LRK54_RS08135	0.50	-0.4
1,782,082	+		LRK54_RS08135	0.50	+0.9
1,782,082	+		LRK54_RS08135	0.50	+0.6
1,782,082	+		LRK54_RS08135	0.50	+1.4
1,782,082	+		LRK54_RS08135	0.50	-0.4
1,782,082	+		LRK54_RS08135	0.50	+0.9
1,782,082	+		LRK54_RS08135	0.50	-0.4
1,782,082	+		LRK54_RS08135	0.50	+0.6
1,782,082	+		LRK54_RS08135	0.50	+0.7
1,782,082	+		LRK54_RS08135	0.50	+0.3
1,782,082	+		LRK54_RS08135	0.50	+0.2
1,782,083	-		LRK54_RS08135	0.51	+0.1
1,782,083	-		LRK54_RS08135	0.51	-0.1
1,782,083	-		LRK54_RS08135	0.51	+0.9
1,782,083	-		LRK54_RS08135	0.51	-1.1
1,782,083	-		LRK54_RS08135	0.51	+0.6
1,782,083	-		LRK54_RS08135	0.51	+1.5
1,782,083	-		LRK54_RS08135	0.51	-1.4
1,782,083	-		LRK54_RS08135	0.51	+1.7
1,782,083	-		LRK54_RS08135	0.51	-0.6
1,782,083	-		LRK54_RS08135	0.51	+0.4
1,782,083	-		LRK54_RS08135	0.51	-0.1
1,782,083	-		LRK54_RS08135	0.51	+0.4
1,782,083	-		LRK54_RS08135	0.51	-0.4
1,782,083	-		LRK54_RS08135	0.51	+2.0
1,782,083	-		LRK54_RS08135	0.51	-0.2
1,782,083	-		LRK54_RS08135	0.51	+0.7
1,782,083	-		LRK54_RS08135	0.51	+0.5
1,782,083	-		LRK54_RS08135	0.51	+0.3
1,782,083	-		LRK54_RS08135	0.51	+1.0
1,782,083	-		LRK54_RS08135	0.51	-0.3
1,782,083	-		LRK54_RS08135	0.51	-0.0
1,782,083	-		LRK54_RS08135	0.51	+1.0
1,782,083	-		LRK54_RS08135	0.51	+0.1
1,782,083	-		LRK54_RS08135	0.51	+0.9
1,782,083	-		LRK54_RS08135	0.51	-1.7
1,782,088	+		LRK54_RS08135	0.51	-0.4
1,782,088	+		LRK54_RS08135	0.51	+0.4
1,782,088	+		LRK54_RS08135	0.51	+0.6
1,782,088	+		LRK54_RS08135	0.51	+0.4
1,782,088	+		LRK54_RS08135	0.51	+0.8
1,782,088	+		LRK54_RS08135	0.51	+1.4
1,782,088	+		LRK54_RS08135	0.51	-0.1
1,782,088	+		LRK54_RS08135	0.51	-0.7
1,782,089	-		LRK54_RS08135	0.51	-0.2
1,782,089	-		LRK54_RS08135	0.51	+1.5
1,782,089	-		LRK54_RS08135	0.51	-0.4
1,782,089	-		LRK54_RS08135	0.51	-0.7
1,782,089	-		LRK54_RS08135	0.51	-0.1
1,782,089	-		LRK54_RS08135	0.51	+0.5
1,782,089	-		LRK54_RS08135	0.51	+0.9
1,782,089	-		LRK54_RS08135	0.51	+1.1
1,782,089	-		LRK54_RS08135	0.51	+0.7
1,782,304	+		LRK54_RS08135	0.68	-2.1
1,782,304	+		LRK54_RS08135	0.68	-1.1
1,782,304	+		LRK54_RS08135	0.68	+0.4
1,782,304	+		LRK54_RS08135	0.68	+1.1
1,782,304	+		LRK54_RS08135	0.68	+0.1
1,782,304	+		LRK54_RS08135	0.68	-0.5
1,782,304	+		LRK54_RS08135	0.68	-1.0
1,782,304	+		LRK54_RS08135	0.68	-0.1
1,782,304	+		LRK54_RS08135	0.68	-1.3
1,782,304	+		LRK54_RS08135	0.68	-0.4
1,782,304	+		LRK54_RS08135	0.68	-1.1
1,782,305	-		LRK54_RS08135	0.68	+0.0
1,782,305	-		LRK54_RS08135	0.68	-1.5
1,782,305	-		LRK54_RS08135	0.68	+1.5
1,782,305	-		LRK54_RS08135	0.68	+0.4
1,782,305	-		LRK54_RS08135	0.68	+0.5
1,782,305	-		LRK54_RS08135	0.68	+0.9
1,782,305	-		LRK54_RS08135	0.68	+0.9
1,782,305	-		LRK54_RS08135	0.68	-1.1
1,782,305	-		LRK54_RS08135	0.68	+2.4
1,782,319	+		LRK54_RS08135	0.69	-2.1
1,782,319	+		LRK54_RS08135	0.69	-0.1
1,782,319	+		LRK54_RS08135	0.69	-0.2
1,782,319	+		LRK54_RS08135	0.69	-0.9
1,782,319	+		LRK54_RS08135	0.69	+1.9
1,782,319	+		LRK54_RS08135	0.69	+1.0
1,782,320	-		LRK54_RS08135	0.70	+0.1
1,782,320	-		LRK54_RS08135	0.70	+0.1
1,782,320	-		LRK54_RS08135	0.70	+0.3
1,782,320	-		LRK54_RS08135	0.70	+0.1
1,782,320	-		LRK54_RS08135	0.70	-0.3
1,782,412	+		LRK54_RS08135	0.77	-0.9
1,782,412	+		LRK54_RS08135	0.77	-0.6
1,782,412	+		LRK54_RS08135	0.77	+0.3
1,782,412	+		LRK54_RS08135	0.77	-1.4
1,782,412	+		LRK54_RS08135	0.77	-0.1
1,782,412	+		LRK54_RS08135	0.77	-0.9
1,782,412	+		LRK54_RS08135	0.77	+1.9
1,782,413	-		LRK54_RS08135	0.77	-1.9
1,782,413	-		LRK54_RS08135	0.77	-0.8
1,782,413	-		LRK54_RS08135	0.77	+0.7
1,782,413	-		LRK54_RS08135	0.77	+0.2
1,782,443	-		LRK54_RS08135	0.79	-0.4
1,782,586	+				-1.8
1,782,586	+				-1.4
1,782,587	-				-0.4
1,783,003	+				-2.4
1,783,045	+				-0.4
1,783,046	-				+0.2
1,783,129	+				-0.5
1,783,129	+				-0.1
1,783,129	+				+0.4
1,783,129	+				-1.1
1,783,129	+				-1.6
1,783,129	+				+0.1
1,783,129	+				-1.4
1,783,129	+				+0.1
1,783,129	+				+0.5
1,783,129	+				-0.2
1,783,129	+				-0.1
1,783,129	+				+0.5
1,783,129	+				+1.5
1,783,129	+				+1.0
1,783,129	+				+1.9
1,783,129	+				-0.9
1,783,129	+				+1.0
1,783,129	+				+0.9
1,783,129	+				-2.1
1,783,129	+				+1.7
1,783,129	+				+2.1
1,783,129	+				-0.5
1,783,129	+				-0.9
1,783,129	+				-1.1
1,783,129	+				-0.2
1,783,129	+				+1.6
1,783,130	-				+1.9
1,783,130	-				+0.9
1,783,130	-				+0.5
1,783,130	-				+0.4
1,783,130	-				+0.4
1,783,130	-				-0.1
1,783,130	-				+1.7
1,783,130	-				-1.0
1,783,130	-				-0.1
1,783,130	-				+0.5
1,783,130	-				+0.5
1,783,130	-				-0.2
1,783,130	-				+0.4
1,783,130	-				+1.1
1,783,130	-				-0.6
1,783,130	-				+0.5
1,783,130	-				-0.2
1,783,130	-				+0.6
1,783,130	-				+0.9
1,783,130	-				-0.5
1,783,130	-				+0.5
1,783,130	-				+0.5
1,783,130	-				+0.5
1,783,130	-				+1.9
1,783,130	-				+0.2
1,783,345	+		LRK54_RS08140	0.14	-0.4
1,783,345	+		LRK54_RS08140	0.14	-1.1
1,783,346	-		LRK54_RS08140	0.14	+1.0
1,783,357	+		LRK54_RS08140	0.15	-0.1
1,783,357	+		LRK54_RS08140	0.15	-0.0
1,783,357	+		LRK54_RS08140	0.15	+0.2
1,783,357	+		LRK54_RS08140	0.15	+0.8
1,783,357	+		LRK54_RS08140	0.15	+0.9
1,783,357	+		LRK54_RS08140	0.15	+2.2
1,783,357	+		LRK54_RS08140	0.15	+1.8
1,783,357	+		LRK54_RS08140	0.15	-0.4
1,783,357	+		LRK54_RS08140	0.15	-1.1
1,783,357	+		LRK54_RS08140	0.15	-2.6
1,783,357	+		LRK54_RS08140	0.15	+1.4
1,783,357	+		LRK54_RS08140	0.15	+1.8
1,783,357	+		LRK54_RS08140	0.15	+0.8
1,783,357	+		LRK54_RS08140	0.15	+1.3
1,783,357	+		LRK54_RS08140	0.15	+0.4
1,783,358	-		LRK54_RS08140	0.15	-2.2
1,783,358	-		LRK54_RS08140	0.15	+0.3
1,783,358	-		LRK54_RS08140	0.15	+0.4
1,783,358	-		LRK54_RS08140	0.15	+0.6
1,783,358	-		LRK54_RS08140	0.15	-0.3
1,783,358	-		LRK54_RS08140	0.15	+0.8
1,783,358	-		LRK54_RS08140	0.15	+0.4
1,783,358	-		LRK54_RS08140	0.15	-0.9
1,783,358	-		LRK54_RS08140	0.15	+2.7
1,783,358	-		LRK54_RS08140	0.15	-0.2
1,783,358	-		LRK54_RS08140	0.15	+0.6
1,783,358	-		LRK54_RS08140	0.15	-1.1
1,783,358	-		LRK54_RS08140	0.15	+1.0
1,783,358	-		LRK54_RS08140	0.15	-0.9
1,783,358	-		LRK54_RS08140	0.15	+0.3
1,783,358	-		LRK54_RS08140	0.15	+0.6
1,783,358	-		LRK54_RS08140	0.15	-0.6
1,783,358	-		LRK54_RS08140	0.15	+0.9
1,783,358	-		LRK54_RS08140	0.15	-0.5
1,783,358	-		LRK54_RS08140	0.15	+0.9
1,783,358	-		LRK54_RS08140	0.15	+1.6
1,783,358	-		LRK54_RS08140	0.15	-0.2
1,783,358	-		LRK54_RS08140	0.15	+0.5
1,783,369	+		LRK54_RS08140	0.15	-0.0
1,783,369	+		LRK54_RS08140	0.15	+0.4
1,783,370	-		LRK54_RS08140	0.15	-2.0
1,783,370	-		LRK54_RS08140	0.15	+0.2
1,783,370	-		LRK54_RS08140	0.15	-0.2
1,783,370	-		LRK54_RS08140	0.15	-0.6
1,783,370	-		LRK54_RS08140	0.15	-0.1
1,783,448	-		LRK54_RS08140	0.17	-0.4
1,783,448	-		LRK54_RS08140	0.17	+0.5