Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS00700

Experiment: R2A with lithium chloride 15.625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with lithium chloride 15.625 mM
149,294	+				-0.6
149,294	+				+2.0
149,294	+				-0.3
149,363	+		LRK54_RS00695	0.15	-1.0
149,363	+		LRK54_RS00695	0.15	-1.0
149,364	-		LRK54_RS00695	0.15	-1.6
149,411	+		LRK54_RS00695	0.20	-0.6
149,411	+		LRK54_RS00695	0.20	-1.0
149,411	+		LRK54_RS00695	0.20	-1.2
149,411	+		LRK54_RS00695	0.20	-0.6
149,412	-		LRK54_RS00695	0.21	-0.6
149,528	+		LRK54_RS00695	0.34	-0.8
149,528	+		LRK54_RS00695	0.34	-0.3
149,528	+		LRK54_RS00695	0.34	+1.0
149,528	+		LRK54_RS00695	0.34	+0.4
149,585	+		LRK54_RS00695	0.40	-0.6
149,585	+		LRK54_RS00695	0.40	+0.0
149,585	+		LRK54_RS00695	0.40	+1.0
149,586	-		LRK54_RS00695	0.40	-0.3
149,984	+		LRK54_RS00695	0.85	+1.0
149,984	+		LRK54_RS00695	0.85	+0.0
149,984	+		LRK54_RS00695	0.85	-0.6
149,984	+		LRK54_RS00695	0.85	-0.3
149,984	+		LRK54_RS00695	0.85	+0.4
149,984	+		LRK54_RS00695	0.85	-0.6
149,984	+		LRK54_RS00695	0.85	-0.3
149,984	+		LRK54_RS00695	0.85	-1.4
149,984	+		LRK54_RS00695	0.85	-0.6
149,985	-		LRK54_RS00695	0.85	+0.4
149,985	-		LRK54_RS00695	0.85	-0.3
149,985	-		LRK54_RS00695	0.85	+2.0
149,985	-		LRK54_RS00695	0.85	+0.0
149,985	-		LRK54_RS00695	0.85	+2.0
149,985	-		LRK54_RS00695	0.85	+0.4
149,996	+		LRK54_RS00695	0.87	-0.6
149,996	+		LRK54_RS00695	0.87	+1.0
149,996	+		LRK54_RS00695	0.87	+0.4
149,997	-		LRK54_RS00695	0.87	+0.4
150,027	-				+0.0
150,140	+				-0.6
150,141	-				-1.2
150,141	-				+1.0
150,141	-				+0.0
150,141	-				+0.4
150,264	+				-0.2
150,265	+				+1.0
150,265	+				+0.4
150,265	+				-0.6
150,265	+				-1.9
150,265	+				-1.8
150,265	+				-1.9
150,266	-				+0.6
150,266	-				-0.0
150,266	-				+0.8
150,266	-				-1.8
150,266	-				-0.8
150,568	+		LRK54_RS00700	0.22	-1.7
150,568	+		LRK54_RS00700	0.22	+1.5
150,568	+		LRK54_RS00700	0.22	+1.2
150,568	+		LRK54_RS00700	0.22	+2.0
150,568	+		LRK54_RS00700	0.22	+2.2
150,568	+		LRK54_RS00700	0.22	+0.8
150,569	-		LRK54_RS00700	0.22	+1.1
150,569	-		LRK54_RS00700	0.22	+1.0
150,569	-		LRK54_RS00700	0.22	-0.5
150,569	-		LRK54_RS00700	0.22	+0.8
150,569	-		LRK54_RS00700	0.22	+1.0
150,569	-		LRK54_RS00700	0.22	+0.2
150,665	+		LRK54_RS00700	0.29	+0.9
150,665	+		LRK54_RS00700	0.29	+1.0
150,665	+		LRK54_RS00700	0.29	+1.7
150,665	+		LRK54_RS00700	0.29	+1.0
150,665	+		LRK54_RS00700	0.29	+1.8
150,665	+		LRK54_RS00700	0.29	+1.1
150,666	-		LRK54_RS00700	0.29	+2.0
150,666	-		LRK54_RS00700	0.29	-0.6
150,666	-		LRK54_RS00700	0.29	+1.7
150,666	-		LRK54_RS00700	0.29	+3.0
150,666	-		LRK54_RS00700	0.29	+0.2
150,666	-		LRK54_RS00700	0.29	+2.6
150,666	-		LRK54_RS00700	0.29	-0.8
150,666	-		LRK54_RS00700	0.29	+1.7
150,666	-		LRK54_RS00700	0.29	+2.8
150,895	+		LRK54_RS00700	0.47	+0.5
150,896	-		LRK54_RS00700	0.47	+1.9
150,950	+		LRK54_RS00700	0.51	+0.7
150,950	+		LRK54_RS00700	0.51	+0.7
150,950	+		LRK54_RS00700	0.51	-0.3
150,951	-		LRK54_RS00700	0.51	-0.9
150,971	+		LRK54_RS00700	0.53	+0.4
150,971	+		LRK54_RS00700	0.53	-0.5
150,971	+		LRK54_RS00700	0.53	+1.3
150,971	+		LRK54_RS00700	0.53	+0.2
150,971	+		LRK54_RS00700	0.53	+1.0
150,971	+		LRK54_RS00700	0.53	-1.9
150,971	+		LRK54_RS00700	0.53	+2.5
150,971	+		LRK54_RS00700	0.53	+2.9
150,971	+		LRK54_RS00700	0.53	+1.4
150,971	+		LRK54_RS00700	0.53	+0.0
150,971	+		LRK54_RS00700	0.53	+0.6
150,971	+		LRK54_RS00700	0.53	+3.0
150,971	+		LRK54_RS00700	0.53	+1.0
150,971	+		LRK54_RS00700	0.53	-0.4
150,971	+		LRK54_RS00700	0.53	+2.0
150,971	+		LRK54_RS00700	0.53	+1.1
150,971	+		LRK54_RS00700	0.53	+0.9
150,971	+		LRK54_RS00700	0.53	+1.2
150,971	+		LRK54_RS00700	0.53	+1.7
150,971	+		LRK54_RS00700	0.53	+0.6
150,971	+		LRK54_RS00700	0.53	-1.4
150,971	+		LRK54_RS00700	0.53	+0.1
150,972	-		LRK54_RS00700	0.53	+1.4
150,972	-		LRK54_RS00700	0.53	+1.4
150,972	-		LRK54_RS00700	0.53	+1.7
150,972	-		LRK54_RS00700	0.53	-1.0
150,972	-		LRK54_RS00700	0.53	+0.2
150,972	-		LRK54_RS00700	0.53	+1.5
150,972	-		LRK54_RS00700	0.53	-0.3
150,972	-		LRK54_RS00700	0.53	+0.4
150,972	-		LRK54_RS00700	0.53	+2.0
150,972	-		LRK54_RS00700	0.53	+1.0
150,972	-		LRK54_RS00700	0.53	+1.8
150,972	-		LRK54_RS00700	0.53	+0.3
150,972	-		LRK54_RS00700	0.53	+0.3
150,972	-		LRK54_RS00700	0.53	-0.2
150,972	-		LRK54_RS00700	0.53	+0.4
150,972	-		LRK54_RS00700	0.53	+0.4
150,972	-		LRK54_RS00700	0.53	+1.2
151,115	+		LRK54_RS00700	0.64	+2.0
151,115	+		LRK54_RS00700	0.64	+0.4
151,115	+		LRK54_RS00700	0.64	+2.6
151,115	+		LRK54_RS00700	0.64	+1.3
151,115	+		LRK54_RS00700	0.64	-0.3
151,115	+		LRK54_RS00700	0.64	+1.7
151,115	+		LRK54_RS00700	0.64	+1.4
151,115	+		LRK54_RS00700	0.64	+0.2
151,116	-		LRK54_RS00700	0.64	+1.8
151,116	-		LRK54_RS00700	0.64	+1.8
151,116	-		LRK54_RS00700	0.64	+2.8
151,116	-		LRK54_RS00700	0.64	+2.3
151,226	-		LRK54_RS00700	0.72	+1.4
151,592	+				+0.5
151,592	+				+1.7
151,592	+				-0.6
151,592	+				-1.6
151,592	+				-0.3
151,593	-				+1.3
151,593	-				-0.1
151,593	-				+1.2
151,675	-				+0.8
151,678	+				-2.1
151,678	+				-2.0
151,733	+				-1.0
151,733	+				+0.6
151,733	+				-0.2
151,733	+				-0.3
151,733	+				-1.3
151,733	+				-1.7
151,733	+				+0.0
151,733	+				-0.2
151,734	-				+0.4
151,734	-				-0.0
151,734	-				+0.0
151,734	-				+0.1
151,734	-				-2.1
151,734	-				-1.1
151,734	-				-0.4
151,734	-				+1.2
151,734	-				+0.1
151,734	-				+0.8
151,734	-				-0.6
151,734	-				-0.3
151,734	-				-0.3
151,734	-				-1.0
151,890	+		LRK54_RS00705	0.20	+0.4
151,890	+		LRK54_RS00705	0.20	-1.0
151,890	+		LRK54_RS00705	0.20	-1.2
151,891	-		LRK54_RS00705	0.20	-2.8
151,891	-		LRK54_RS00705	0.20	-0.9
151,891	-		LRK54_RS00705	0.20	-1.7
151,891	-		LRK54_RS00705	0.20	-1.4
151,947	+		LRK54_RS00705	0.30	-1.2
151,947	+		LRK54_RS00705	0.30	-1.4
151,947	+		LRK54_RS00705	0.30	+0.0
151,947	+		LRK54_RS00705	0.30	-1.4
151,947	+		LRK54_RS00705	0.30	-1.4
151,947	+		LRK54_RS00705	0.30	-2.7
151,947	+		LRK54_RS00705	0.30	-1.3
151,947	+		LRK54_RS00705	0.30	-1.9
151,947	+		LRK54_RS00705	0.30	-0.8
151,947	+		LRK54_RS00705	0.30	-2.3
151,947	+		LRK54_RS00705	0.30	-0.6
151,947	+		LRK54_RS00705	0.30	-1.6
151,948	-		LRK54_RS00705	0.30	-2.9
151,948	-		LRK54_RS00705	0.30	-1.0
151,948	-		LRK54_RS00705	0.30	-0.3
151,948	-		LRK54_RS00705	0.30	+1.0
151,948	-		LRK54_RS00705	0.30	-2.5
151,948	-		LRK54_RS00705	0.30	-2.1
151,948	-		LRK54_RS00705	0.30	-0.3
151,948	-		LRK54_RS00705	0.30	+0.0
151,948	-		LRK54_RS00705	0.30	-3.8
151,948	-		LRK54_RS00705	0.30	-0.3
151,948	-		LRK54_RS00705	0.30	-0.6
151,948	-		LRK54_RS00705	0.30	-1.7
151,948	-		LRK54_RS00705	0.30	+0.4
151,980	+		LRK54_RS00705	0.36	-0.6
151,980	+		LRK54_RS00705	0.36	+0.0
151,980	+		LRK54_RS00705	0.36	-2.3
151,980	+		LRK54_RS00705	0.36	-0.6
151,980	+		LRK54_RS00705	0.36	-2.1
151,981	-		LRK54_RS00705	0.36	+1.0
151,981	-		LRK54_RS00705	0.36	-0.3
151,981	-		LRK54_RS00705	0.36	+1.0
152,055	+		LRK54_RS00705	0.49	-3.5
152,055	+		LRK54_RS00705	0.49	-0.9
152,055	+		LRK54_RS00705	0.49	-1.9
152,055	+		LRK54_RS00705	0.49	-0.3
152,055	+		LRK54_RS00705	0.49	-1.4
152,055	+		LRK54_RS00705	0.49	-0.8
152,055	+		LRK54_RS00705	0.49	-2.8
152,055	+		LRK54_RS00705	0.49	+0.4
152,055	+		LRK54_RS00705	0.49	-0.9
152,055	+		LRK54_RS00705	0.49	-2.3
152,055	+		LRK54_RS00705	0.49	+0.8
152,055	+		LRK54_RS00705	0.49	-1.4
152,055	+		LRK54_RS00705	0.49	-2.4
152,055	+		LRK54_RS00705	0.49	-0.8
152,056	-		LRK54_RS00705	0.50	-0.3
152,056	-		LRK54_RS00705	0.50	-1.8
152,056	-		LRK54_RS00705	0.50	-1.7
152,056	-		LRK54_RS00705	0.50	-1.0
152,056	-		LRK54_RS00705	0.50	+0.0
152,056	-		LRK54_RS00705	0.50	-1.8
152,056	-		LRK54_RS00705	0.50	-0.8
152,244	+		LRK54_RS00705	0.83	-0.8
152,244	+		LRK54_RS00705	0.83	-2.5
152,244	+		LRK54_RS00705	0.83	-2.6
152,244	+		LRK54_RS00705	0.83	-1.7
152,244	+		LRK54_RS00705	0.83	+0.4
152,244	+		LRK54_RS00705	0.83	-0.3
152,244	+		LRK54_RS00705	0.83	-0.3
152,245	-		LRK54_RS00705	0.83	-0.3
152,245	-		LRK54_RS00705	0.83	+1.0
152,245	-		LRK54_RS00705	0.83	-2.9
152,245	-		LRK54_RS00705	0.83	+2.0
152,245	-		LRK54_RS00705	0.83	+2.0
152,245	-		LRK54_RS00705	0.83	-2.0
152,245	-		LRK54_RS00705	0.83	-1.0
152,245	-		LRK54_RS00705	0.83	+1.0
152,245	-		LRK54_RS00705	0.83	+0.0
152,337	+				-2.3
152,337	+				+0.9
152,337	+				-1.0
152,337	+				-2.3
152,337	+				+1.0
152,337	+				-2.9
152,337	+				-1.5
152,337	+				-0.9
152,337	+				-1.9
152,337	+				-0.7
152,337	+				-2.3
152,337	+				+0.4
152,337	+				-1.0
152,337	+				-0.3
152,337	+				+0.7
152,337	+				-0.5
152,337	+				-2.2
152,337	+				+1.0
152,337	+				-0.6
152,337	+				-0.5
152,337	+				-0.3
152,337	+				-0.2
152,337	+				-1.3
152,337	+				+2.0
152,337	+				-0.6
152,337	+				-1.4
152,337	+				+0.2
152,337	+				+0.7
152,337	+				-0.5
152,337	+				+0.8
152,337	+				-0.6
152,337	+				-0.9
152,338	-				-1.3
152,338	-				-1.2
152,338	-				+0.8
152,338	-				-0.6
152,338	-				+1.0
152,338	-				-3.8
152,338	-				+0.1
152,338	-				+2.0
152,338	-				-0.6
152,338	-				-0.4
152,338	-				-0.6
152,338	-				-1.4
152,338	-				-0.1
152,338	-				-0.4
152,338	-				-1.9
152,338	-				-0.8
152,338	-				+0.4
152,338	-				+1.0
152,338	-				-0.4
152,338	-				-1.7
152,338	-				-0.8
152,338	-				-0.4
152,338	-				-1.9
152,338	-				-0.7
152,338	-				-1.3
152,338	-				-2.0
152,338	-				+0.8
152,338	-				-1.4
152,338	-				+1.0
152,338	-				-1.4
152,338	-				-0.4
152,338	-				+0.0
152,338	-				+1.7
152,338	-				+1.4
152,508	+				-1.7
152,508	+				+0.1
152,508	+				-1.9
152,508	+				-0.4
152,508	+				-0.9
152,508	+				-1.5
152,508	+				-0.8
152,508	+				-1.8
152,508	+				+0.4
152,508	+				-0.3
152,508	+				-1.1
152,508	+				-0.3
152,508	+				+0.0
152,508	+				-1.0
152,509	-				-2.2
152,509	-				-0.8
152,509	-				+1.0
152,509	-				-1.0
152,509	-				+2.0
152,509	-				+0.0
152,509	-				+1.0
152,509	-				-1.3
152,509	-				+1.3
152,509	-				+0.5