Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21650 and IAI47_21655 are separated by 104 nucleotides IAI47_21655 and IAI47_21660 are separated by 248 nucleotides IAI47_21660 and IAI47_21665 are separated by 386 nucleotides IAI47_21665 and IAI47_21670 are separated by 239 nucleotides
IAI47_21650: IAI47_21650 - Gfo/Idh/MocA family oxidoreductase, at 73,871 to 74,884
_21650
IAI47_21655: IAI47_21655 - LacI family DNA-binding transcriptional regulator, at 74,989 to 75,114
_21655
IAI47_21660: IAI47_21660 - PACE efflux transporter, at 75,363 to 75,800
_21660
IAI47_21665: IAI47_21665 - DUF333 domain-containing protein, at 76,187 to 76,435
_21665
IAI47_21670: IAI47_21670 - LuxR family transcriptional regulator, at 76,675 to 77,310
_21670
Position (kb) 75
76 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 74.441 kb on + strand, within IAI47_21650 at 74.441 kb on + strand, within IAI47_21650 at 74.441 kb on + strand, within IAI47_21650 at 74.442 kb on - strand, within IAI47_21650 at 74.442 kb on - strand, within IAI47_21650 at 74.442 kb on - strand, within IAI47_21650 at 74.485 kb on + strand, within IAI47_21650 at 74.486 kb on - strand, within IAI47_21650 at 74.486 kb on - strand, within IAI47_21650 at 74.518 kb on + strand, within IAI47_21650 at 74.537 kb on + strand, within IAI47_21650 at 74.537 kb on + strand, within IAI47_21650 at 74.537 kb on + strand, within IAI47_21650 at 74.537 kb on + strand, within IAI47_21650 at 74.537 kb on + strand, within IAI47_21650 at 74.537 kb on + strand, within IAI47_21650 at 74.537 kb on + strand, within IAI47_21650 at 74.538 kb on - strand, within IAI47_21650 at 74.538 kb on - strand, within IAI47_21650 at 74.538 kb on - strand, within IAI47_21650 at 74.538 kb on - strand, within IAI47_21650 at 74.538 kb on - strand, within IAI47_21650 at 74.538 kb on - strand, within IAI47_21650 at 74.544 kb on + strand, within IAI47_21650 at 74.544 kb on + strand, within IAI47_21650 at 74.544 kb on + strand, within IAI47_21650 at 74.544 kb on + strand, within IAI47_21650 at 74.544 kb on + strand, within IAI47_21650 at 74.544 kb on + strand, within IAI47_21650 at 74.545 kb on - strand, within IAI47_21650 at 74.545 kb on - strand, within IAI47_21650 at 74.545 kb on - strand, within IAI47_21650 at 74.545 kb on - strand, within IAI47_21650 at 74.557 kb on + strand, within IAI47_21650 at 74.558 kb on - strand, within IAI47_21650 at 74.610 kb on + strand, within IAI47_21650 at 74.610 kb on + strand, within IAI47_21650 at 74.610 kb on + strand, within IAI47_21650 at 74.611 kb on - strand, within IAI47_21650 at 74.611 kb on - strand, within IAI47_21650 at 74.621 kb on - strand, within IAI47_21650 at 74.679 kb on - strand, within IAI47_21650 at 74.686 kb on + strand, within IAI47_21650 at 74.686 kb on + strand, within IAI47_21650 at 74.686 kb on + strand, within IAI47_21650 at 74.687 kb on - strand, within IAI47_21650 at 74.689 kb on - strand, within IAI47_21650 at 74.842 kb on + strand at 74.900 kb on - strand at 74.900 kb on - strand at 74.941 kb on + strand at 74.942 kb on - strand at 74.971 kb on + strand at 74.971 kb on + strand at 74.972 kb on - strand at 75.084 kb on + strand, within IAI47_21655 at 75.119 kb on + strand at 75.120 kb on - strand at 75.124 kb on + strand at 75.126 kb on + strand at 75.126 kb on + strand at 75.132 kb on + strand at 75.155 kb on + strand at 75.158 kb on + strand at 75.163 kb on + strand at 75.163 kb on + strand at 75.164 kb on - strand at 75.182 kb on + strand at 75.183 kb on - strand at 75.183 kb on - strand at 75.183 kb on - strand at 75.183 kb on - strand at 75.197 kb on + strand at 75.198 kb on - strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.281 kb on - strand at 75.281 kb on - strand at 75.281 kb on - strand at 75.291 kb on + strand at 75.291 kb on + strand at 75.291 kb on + strand at 75.291 kb on + strand at 75.291 kb on + strand at 75.291 kb on + strand at 75.292 kb on - strand at 75.305 kb on + strand at 75.305 kb on + strand at 75.305 kb on + strand at 75.306 kb on - strand at 75.306 kb on - strand at 75.306 kb on - strand at 75.332 kb on - strand at 75.332 kb on - strand at 75.332 kb on - strand at 75.332 kb on - strand at 75.344 kb on + strand at 75.344 kb on + strand at 75.344 kb on + strand at 75.345 kb on - strand at 75.345 kb on - strand at 75.372 kb on + strand at 75.372 kb on + strand at 75.372 kb on + strand at 75.372 kb on + strand at 75.372 kb on + strand at 75.373 kb on - strand at 75.373 kb on - strand at 75.373 kb on - strand at 75.373 kb on - strand at 75.373 kb on - strand at 75.376 kb on + strand at 75.376 kb on + strand at 75.376 kb on + strand at 75.376 kb on + strand at 75.448 kb on + strand, within IAI47_21660 at 75.449 kb on - strand, within IAI47_21660 at 75.449 kb on - strand, within IAI47_21660 at 75.449 kb on - strand, within IAI47_21660 at 75.455 kb on + strand, within IAI47_21660 at 75.540 kb on + strand, within IAI47_21660 at 75.540 kb on + strand, within IAI47_21660 at 75.540 kb on + strand, within IAI47_21660 at 75.541 kb on - strand, within IAI47_21660 at 75.541 kb on - strand, within IAI47_21660 at 75.541 kb on - strand, within IAI47_21660 at 75.541 kb on - strand, within IAI47_21660 at 75.643 kb on + strand, within IAI47_21660 at 75.643 kb on + strand, within IAI47_21660 at 75.643 kb on + strand, within IAI47_21660 at 75.644 kb on - strand, within IAI47_21660 at 75.680 kb on + strand, within IAI47_21660 at 75.681 kb on - strand, within IAI47_21660 at 75.681 kb on - strand, within IAI47_21660 at 75.683 kb on + strand, within IAI47_21660 at 75.683 kb on + strand, within IAI47_21660 at 75.684 kb on - strand, within IAI47_21660 at 75.684 kb on - strand, within IAI47_21660 at 75.744 kb on + strand, within IAI47_21660 at 75.745 kb on - strand, within IAI47_21660 at 75.745 kb on - strand, within IAI47_21660 at 75.745 kb on - strand, within IAI47_21660 at 75.745 kb on - strand, within IAI47_21660 at 75.753 kb on - strand, within IAI47_21660 at 75.773 kb on + strand at 75.803 kb on + strand at 75.895 kb on + strand at 76.114 kb on + strand at 76.140 kb on - strand at 76.145 kb on - strand at 76.150 kb on + strand at 76.151 kb on - strand at 76.151 kb on - strand at 76.212 kb on - strand, within IAI47_21665 at 76.331 kb on - strand, within IAI47_21665 at 76.337 kb on + strand, within IAI47_21665 at 76.437 kb on + strand at 76.493 kb on + strand at 76.677 kb on - strand at 76.677 kb on - strand at 76.690 kb on - strand at 76.787 kb on + strand, within IAI47_21670 at 76.788 kb on - strand, within IAI47_21670 at 76.792 kb on - strand, within IAI47_21670 at 76.800 kb on - strand, within IAI47_21670
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 74,441 + IAI47_21650 0.56 +1.3 74,441 + IAI47_21650 0.56 +2.5 74,441 + IAI47_21650 0.56 +0.6 74,442 - IAI47_21650 0.56 -1.5 74,442 - IAI47_21650 0.56 -1.5 74,442 - IAI47_21650 0.56 +0.9 74,485 + IAI47_21650 0.61 +0.2 74,486 - IAI47_21650 0.61 +1.3 74,486 - IAI47_21650 0.61 +0.5 74,518 + IAI47_21650 0.64 +1.9 74,537 + IAI47_21650 0.66 -1.1 74,537 + IAI47_21650 0.66 +0.4 74,537 + IAI47_21650 0.66 +1.3 74,537 + IAI47_21650 0.66 -1.5 74,537 + IAI47_21650 0.66 -1.6 74,537 + IAI47_21650 0.66 -0.9 74,537 + IAI47_21650 0.66 -0.7 74,538 - IAI47_21650 0.66 -0.1 74,538 - IAI47_21650 0.66 -0.7 74,538 - IAI47_21650 0.66 -0.0 74,538 - IAI47_21650 0.66 -0.1 74,538 - IAI47_21650 0.66 +0.3 74,538 - IAI47_21650 0.66 -0.7 74,544 + IAI47_21650 0.66 +0.0 74,544 + IAI47_21650 0.66 -0.7 74,544 + IAI47_21650 0.66 -1.7 74,544 + IAI47_21650 0.66 +3.5 74,544 + IAI47_21650 0.66 -1.1 74,544 + IAI47_21650 0.66 +3.5 74,545 - IAI47_21650 0.66 +0.6 74,545 - IAI47_21650 0.66 -1.1 74,545 - IAI47_21650 0.66 -0.9 74,545 - IAI47_21650 0.66 -2.6 74,557 + IAI47_21650 0.68 -2.1 74,558 - IAI47_21650 0.68 -0.5 74,610 + IAI47_21650 0.73 -2.3 74,610 + IAI47_21650 0.73 -0.7 74,610 + IAI47_21650 0.73 -2.1 74,611 - IAI47_21650 0.73 -1.4 74,611 - IAI47_21650 0.73 -1.1 74,621 - IAI47_21650 0.74 +3.3 74,679 - IAI47_21650 0.80 -2.2 74,686 + IAI47_21650 0.80 +0.3 74,686 + IAI47_21650 0.80 +1.2 74,686 + IAI47_21650 0.80 -1.5 74,687 - IAI47_21650 0.80 -0.1 74,689 - IAI47_21650 0.81 +0.1 74,842 + +2.5 74,900 - +0.6 74,900 - +1.9 74,941 + -1.5 74,942 - +2.9 74,971 + +1.4 74,971 + -0.5 74,972 - +0.1 75,084 + IAI47_21655 0.75 -1.4 75,119 + +2.1 75,120 - -0.1 75,124 + +0.3 75,126 + -0.9 75,126 + +0.4 75,132 + -2.3 75,155 + -1.1 75,158 + -2.6 75,163 + -0.6 75,163 + +1.2 75,164 - -0.1 75,182 + -1.1 75,183 - -1.6 75,183 - +0.9 75,183 - -1.7 75,183 - +0.5 75,197 + +0.5 75,198 - +1.7 75,237 + -2.4 75,237 + -2.3 75,237 + +2.2 75,237 + -1.3 75,237 + +0.4 75,237 + +1.5 75,237 + -0.4 75,237 + +0.5 75,237 + -0.9 75,238 - +1.3 75,238 - -0.9 75,238 - -0.6 75,238 - +0.7 75,238 - -2.1 75,238 - -0.7 75,238 - -0.1 75,238 - -0.4 75,238 - +1.3 75,238 - +0.7 75,238 - -0.5 75,238 - -0.9 75,238 - -2.1 75,238 - +0.1 75,238 - +0.1 75,238 - -1.3 75,281 - -0.0 75,281 - +1.5 75,281 - -0.1 75,291 + +0.4 75,291 + -0.6 75,291 + -1.8 75,291 + -2.1 75,291 + -0.1 75,291 + -1.5 75,292 - -1.1 75,305 + +0.9 75,305 + -0.7 75,305 + +0.4 75,306 - +0.1 75,306 - -0.3 75,306 - +1.3 75,332 - -2.1 75,332 - -0.1 75,332 - -1.0 75,332 - +0.2 75,344 + -0.7 75,344 + -2.5 75,344 + +0.3 75,345 - +0.4 75,345 - -2.0 75,372 + -0.1 75,372 + -0.1 75,372 + +1.2 75,372 + +1.5 75,372 + -1.4 75,373 - +1.1 75,373 - +1.3 75,373 - +1.9 75,373 - +1.5 75,373 - -0.1 75,376 + +0.5 75,376 + +1.2 75,376 + -0.1 75,376 + -1.5 75,448 + IAI47_21660 0.19 +1.5 75,449 - IAI47_21660 0.20 -0.1 75,449 - IAI47_21660 0.20 +2.9 75,449 - IAI47_21660 0.20 +0.1 75,455 + IAI47_21660 0.21 -0.3 75,540 + IAI47_21660 0.40 -0.8 75,540 + IAI47_21660 0.40 +0.6 75,540 + IAI47_21660 0.40 +0.9 75,541 - IAI47_21660 0.41 +0.5 75,541 - IAI47_21660 0.41 +0.1 75,541 - IAI47_21660 0.41 -0.2 75,541 - IAI47_21660 0.41 +1.2 75,643 + IAI47_21660 0.64 +0.9 75,643 + IAI47_21660 0.64 +0.5 75,643 + IAI47_21660 0.64 +1.5 75,644 - IAI47_21660 0.64 +0.1 75,680 + IAI47_21660 0.72 -3.3 75,681 - IAI47_21660 0.73 +1.6 75,681 - IAI47_21660 0.73 +0.7 75,683 + IAI47_21660 0.73 +0.5 75,683 + IAI47_21660 0.73 -0.7 75,684 - IAI47_21660 0.73 +1.6 75,684 - IAI47_21660 0.73 +0.1 75,744 + IAI47_21660 0.87 -1.1 75,745 - IAI47_21660 0.87 -0.0 75,745 - IAI47_21660 0.87 +1.5 75,745 - IAI47_21660 0.87 -0.5 75,745 - IAI47_21660 0.87 +1.9 75,753 - IAI47_21660 0.89 +2.0 75,773 + -0.5 75,803 + +0.2 75,895 + -1.8 76,114 + +1.7 76,140 - +1.7 76,145 - -1.1 76,150 + +1.9 76,151 - +0.2 76,151 - -1.2 76,212 - IAI47_21665 0.10 -0.7 76,331 - IAI47_21665 0.58 +1.7 76,337 + IAI47_21665 0.60 -1.4 76,437 + -0.9 76,493 + +0.3 76,677 - +1.1 76,677 - -1.1 76,690 - -2.7 76,787 + IAI47_21670 0.18 -2.1 76,788 - IAI47_21670 0.18 +0.6 76,792 - IAI47_21670 0.18 -0.1 76,800 - IAI47_21670 0.20 -0.0
Or see this region's nucleotide sequence