Strain Fitness in Pantoea sp. MT58 around IAI47_18430

Experiment: nitrogen source nitrite 0.5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 0.5mM
3,922,384	+				+0.3
3,922,384	+				+0.2
3,922,384	+				+0.8
3,922,384	+				-0.4
3,922,384	+				+0.2
3,922,384	+				-0.1
3,922,384	+				+0.6
3,922,384	+				+1.8
3,922,385	-				+0.7
3,922,385	-				+0.8
3,922,401	+				-0.8
3,922,401	+				-0.3
3,922,401	+				+0.9
3,922,401	+				+1.3
3,922,401	+				-0.9
3,922,420	+				-0.6
3,924,108	+				-2.4
3,924,108	+				-0.4
3,924,108	+				-0.1
3,924,109	-				+0.2
3,924,109	-				+1.0
3,924,109	-				+0.6
3,924,128	+				+0.2
3,924,128	+				-0.4
3,924,128	+				-1.3
3,924,128	+				-1.4
3,924,128	+				-2.0
3,924,128	+				-2.1
3,924,128	+				+1.4
3,924,128	+				+1.1
3,924,128	+				-0.1
3,924,128	+				-0.6
3,924,128	+				+0.9
3,924,129	-				-0.1
3,924,129	-				+1.0
3,924,129	-				-1.0
3,924,129	-				+0.6
3,924,129	-				+0.7
3,924,129	-				-0.8
3,924,129	-				+0.4
3,924,129	-				+1.0
3,924,129	-				+0.6
3,924,208	+				-1.4
3,924,208	+				-0.6
3,924,208	+				-0.0
3,924,208	+				+1.0
3,924,208	+				+1.6
3,924,208	+				-0.1
3,924,208	+				-0.2
3,924,208	+				-1.3
3,924,209	-				-0.3
3,924,209	-				+0.3
3,924,209	-				-0.4
3,924,209	-				+0.0
3,924,209	-				+0.7
3,924,219	-				+1.6
3,924,289	+		IAI47_18435	0.14	+0.9
3,924,290	-		IAI47_18435	0.14	+0.6
3,924,290	-		IAI47_18435	0.14	+2.4
3,924,290	-		IAI47_18435	0.14	-0.4
3,924,290	-		IAI47_18435	0.14	+1.6
3,924,290	-		IAI47_18435	0.14	+1.4
3,924,290	-		IAI47_18435	0.14	+0.7
3,924,290	-		IAI47_18435	0.14	+0.2
3,924,291	+		IAI47_18435	0.14	+0.3
3,924,291	+		IAI47_18435	0.14	+0.2
3,924,291	+		IAI47_18435	0.14	-3.1
3,924,291	+		IAI47_18435	0.14	+0.7
3,924,291	+		IAI47_18435	0.14	+1.9
3,924,291	+		IAI47_18435	0.14	-0.6
3,924,291	+		IAI47_18435	0.14	+0.7
3,924,291	+		IAI47_18435	0.14	-2.1
3,924,291	+		IAI47_18435	0.14	+0.1
3,924,292	-		IAI47_18435	0.14	+0.4
3,924,292	-		IAI47_18435	0.14	-2.5
3,924,292	-		IAI47_18435	0.14	-1.1
3,924,296	+		IAI47_18435	0.15	-2.1
3,924,319	+		IAI47_18435	0.17	+1.6
3,924,355	+		IAI47_18435	0.20	+0.0
3,924,356	-		IAI47_18435	0.20	-0.9
3,924,409	+		IAI47_18435	0.25	-1.9
3,924,409	+		IAI47_18435	0.25	+0.7
3,924,409	+		IAI47_18435	0.25	+0.3
3,924,409	+		IAI47_18435	0.25	-1.1
3,924,409	+		IAI47_18435	0.25	+0.7
3,924,409	+		IAI47_18435	0.25	-0.3
3,924,409	+		IAI47_18435	0.25	+1.6
3,924,409	+		IAI47_18435	0.25	+0.5
3,924,409	+		IAI47_18435	0.25	-2.0
3,924,410	-		IAI47_18435	0.25	+0.2
3,924,410	-		IAI47_18435	0.25	+0.6
3,924,410	-		IAI47_18435	0.25	+1.1
3,924,410	-		IAI47_18435	0.25	+0.2
3,924,410	-		IAI47_18435	0.25	+0.5
3,924,410	-		IAI47_18435	0.25	+1.9
3,924,410	-		IAI47_18435	0.25	-2.3
3,924,410	-		IAI47_18435	0.25	-1.6
3,924,410	-		IAI47_18435	0.25	-1.1
3,924,410	-		IAI47_18435	0.25	+0.7
3,924,413	+		IAI47_18435	0.25	+1.0
3,924,493	+		IAI47_18435	0.32	+0.6
3,924,546	+		IAI47_18435	0.37	+0.9
3,924,546	+		IAI47_18435	0.37	-1.3
3,924,546	+		IAI47_18435	0.37	-2.3
3,924,546	+		IAI47_18435	0.37	+1.3
3,924,546	+		IAI47_18435	0.37	+2.0
3,924,547	-		IAI47_18435	0.37	-0.9
3,924,689	+		IAI47_18435	0.49	-0.6
3,924,689	+		IAI47_18435	0.49	+0.5
3,924,724	-		IAI47_18435	0.52	+1.3
3,924,761	+		IAI47_18435	0.56	+0.6
3,924,761	+		IAI47_18435	0.56	+0.4
3,924,899	+		IAI47_18435	0.68	+1.5
3,924,899	+		IAI47_18435	0.68	+0.3
3,924,902	+		IAI47_18435	0.68	+0.7
3,924,958	+		IAI47_18435	0.73	+0.9
3,924,958	+		IAI47_18435	0.73	-0.7
3,924,958	+		IAI47_18435	0.73	-1.6
3,924,958	+		IAI47_18435	0.73	-0.8
3,924,958	+		IAI47_18435	0.73	+1.0
3,924,958	+		IAI47_18435	0.73	+0.4
3,924,958	+		IAI47_18435	0.73	-0.1
3,924,958	+		IAI47_18435	0.73	-1.6
3,924,958	+		IAI47_18435	0.73	+0.9
3,924,958	+		IAI47_18435	0.73	-1.7
3,924,958	+		IAI47_18435	0.73	+1.5
3,924,958	+		IAI47_18435	0.73	+0.8
3,924,958	+		IAI47_18435	0.73	+2.4
3,924,958	+		IAI47_18435	0.73	-1.6
3,924,958	+		IAI47_18435	0.73	-0.5
3,924,958	+		IAI47_18435	0.73	+0.7
3,924,958	+		IAI47_18435	0.73	+0.3
3,924,959	-		IAI47_18435	0.73	-0.6
3,924,959	-		IAI47_18435	0.73	-0.4
3,924,959	-		IAI47_18435	0.73	+1.7
3,924,959	-		IAI47_18435	0.73	+1.1
3,924,959	-		IAI47_18435	0.73	+0.3
3,924,959	-		IAI47_18435	0.73	+0.2
3,924,959	-		IAI47_18435	0.73	-0.6
3,924,959	-		IAI47_18435	0.73	-1.4
3,924,959	-		IAI47_18435	0.73	-1.3
3,924,959	-		IAI47_18435	0.73	+1.0
3,924,959	-		IAI47_18435	0.73	+1.4
3,924,959	-		IAI47_18435	0.73	+1.8
3,924,959	-		IAI47_18435	0.73	+2.6
3,924,959	-		IAI47_18435	0.73	+0.4
3,924,959	-		IAI47_18435	0.73	+0.4
3,924,959	-		IAI47_18435	0.73	-0.8
3,924,959	-		IAI47_18435	0.73	+1.8
3,924,959	-		IAI47_18435	0.73	+2.1
3,924,960	+		IAI47_18435	0.73	-0.2
3,924,960	+		IAI47_18435	0.73	-0.9
3,924,960	+		IAI47_18435	0.73	-0.3
3,924,960	+		IAI47_18435	0.73	+2.9
3,924,961	-		IAI47_18435	0.73	-1.8
3,924,961	-		IAI47_18435	0.73	+0.1
3,924,961	-		IAI47_18435	0.73	-0.3
3,924,961	-		IAI47_18435	0.73	+1.0
3,924,961	-		IAI47_18435	0.73	-1.2
3,924,961	-		IAI47_18435	0.73	+0.8
3,924,961	-		IAI47_18435	0.73	-0.9
3,924,961	-		IAI47_18435	0.73	+1.3
3,924,961	-		IAI47_18435	0.73	+1.1
3,924,961	-		IAI47_18435	0.73	+1.3
3,924,961	-		IAI47_18435	0.73	+1.7
3,924,961	-		IAI47_18435	0.73	-0.4
3,925,032	+		IAI47_18435	0.80	+0.7
3,925,032	+		IAI47_18435	0.80	+0.6
3,925,033	-		IAI47_18435	0.80	+1.1
3,925,033	-		IAI47_18435	0.80	+0.2
3,925,034	+		IAI47_18435	0.80	-0.1
3,925,035	-		IAI47_18435	0.80	+0.2
3,925,043	+		IAI47_18435	0.81	-0.6
3,925,043	+		IAI47_18435	0.81	-1.3
3,925,044	-		IAI47_18435	0.81	+0.7
3,925,044	-		IAI47_18435	0.81	-0.8
3,925,049	+		IAI47_18435	0.81	+0.3
3,925,050	-		IAI47_18435	0.81	-0.8
3,925,077	+		IAI47_18435	0.84	-1.3
3,925,077	+		IAI47_18435	0.84	+2.6
3,925,078	-		IAI47_18435	0.84	-0.8
3,925,085	+		IAI47_18435	0.84	+0.4
3,925,085	+		IAI47_18435	0.84	+2.2
3,925,085	+		IAI47_18435	0.84	-1.3
3,925,085	+		IAI47_18435	0.84	+2.7
3,925,086	-		IAI47_18435	0.84	+0.8
3,925,086	-		IAI47_18435	0.84	-1.4
3,925,086	-		IAI47_18435	0.84	+0.6
3,925,086	-		IAI47_18435	0.84	+0.5
3,925,086	-		IAI47_18435	0.84	-1.3
3,925,086	-		IAI47_18435	0.84	+0.6
3,925,086	-		IAI47_18435	0.84	-1.3
3,925,086	-		IAI47_18435	0.84	+1.3
3,925,086	-		IAI47_18435	0.84	+0.5