Strain Fitness in Pantoea sp. MT58 around IAI47_16020

Experiment: nitrogen source nitrite 0.5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 0.5mM
3,382,445	+		IAI47_16010	0.83	+0.1
3,382,548	-				-1.5
3,382,548	-				-0.5
3,382,548	-				-2.1
3,382,548	-				-2.5
3,382,560	-				-0.1
3,382,560	-				-0.5
3,382,560	-				-1.8
3,382,592	+				-2.6
3,382,592	+				-1.3
3,382,592	+				-1.4
3,382,593	-				-1.4
3,382,593	-				+0.7
3,382,593	-				-0.8
3,382,593	-				-2.4
3,382,593	-				-1.3
3,382,677	+				-0.1
3,382,677	+				-0.4
3,382,677	+				-1.1
3,382,677	+				-3.3
3,382,677	+				-1.5
3,382,677	+				-0.3
3,382,678	-				-1.0
3,382,678	-				-0.3
3,382,678	-				-2.7
3,382,678	-				-0.2
3,382,678	-				-1.3
3,382,678	-				+0.3
3,382,678	-				-1.4
3,382,691	+				-1.6
3,382,692	-				-0.5
3,382,844	+		IAI47_16015	0.27	+0.2
3,382,845	-		IAI47_16015	0.27	-2.1
3,382,874	+		IAI47_16015	0.32	-0.1
3,382,874	+		IAI47_16015	0.32	-2.2
3,382,874	+		IAI47_16015	0.32	+1.5
3,382,875	-		IAI47_16015	0.32	-3.6
3,382,886	+		IAI47_16015	0.33	-0.5
3,382,887	-		IAI47_16015	0.34	-0.7
3,383,006	+		IAI47_16015	0.53	-0.5
3,383,008	+		IAI47_16015	0.54	-1.4
3,383,054	-		IAI47_16015	0.61	-1.5
3,383,161	-		IAI47_16015	0.79	-0.6
3,383,177	+		IAI47_16015	0.82	+0.2
3,383,201	+		IAI47_16015	0.85	-1.3
3,383,201	+		IAI47_16015	0.85	+0.3
3,383,201	+		IAI47_16015	0.85	-3.1
3,383,201	+		IAI47_16015	0.85	-0.3
3,383,202	-		IAI47_16015	0.86	+0.2
3,383,202	-		IAI47_16015	0.86	+0.1
3,383,202	-		IAI47_16015	0.86	+0.1
3,383,256	+				-0.8
3,383,256	+				-0.7
3,383,257	-				-1.9
3,383,257	-				-0.3
3,383,257	-				+1.0
3,383,257	-				-1.9
3,383,296	-				-1.2
3,383,329	+				+0.2
3,383,329	+				-0.1
3,383,330	-				+0.1
3,383,330	-				+1.1
3,383,331	+				+1.6
3,383,331	+				-0.3
3,383,331	+				-1.8
3,383,331	+				+0.8
3,383,331	+				+0.6
3,383,332	-				-0.4
3,383,332	-				+0.3
3,383,535	+		IAI47_16020	0.18	+0.3
3,383,535	+		IAI47_16020	0.18	-1.0
3,383,535	+		IAI47_16020	0.18	+0.0
3,383,535	+		IAI47_16020	0.18	+0.2
3,383,536	-		IAI47_16020	0.18	+1.1
3,383,546	+		IAI47_16020	0.18	-1.0
3,383,547	-		IAI47_16020	0.19	-0.7
3,383,547	-		IAI47_16020	0.19	+1.3
3,383,547	-		IAI47_16020	0.19	+1.2
3,383,547	-		IAI47_16020	0.19	-0.3
3,383,547	-		IAI47_16020	0.19	-1.6
3,383,567	+		IAI47_16020	0.20	+0.7
3,383,568	-		IAI47_16020	0.20	-0.7
3,383,568	-		IAI47_16020	0.20	+0.6
3,383,568	-		IAI47_16020	0.20	+0.3
3,383,577	+		IAI47_16020	0.21	-0.9
3,383,577	+		IAI47_16020	0.21	-1.2
3,383,577	+		IAI47_16020	0.21	+1.1
3,383,577	+		IAI47_16020	0.21	-0.2
3,383,578	-		IAI47_16020	0.21	-2.9
3,383,578	-		IAI47_16020	0.21	-0.1
3,383,578	-		IAI47_16020	0.21	-0.7
3,383,578	-		IAI47_16020	0.21	+0.2
3,383,686	+		IAI47_16020	0.30	+0.8
3,383,686	+		IAI47_16020	0.30	+0.1
3,383,783	+		IAI47_16020	0.39	+0.3
3,383,785	+		IAI47_16020	0.39	+0.5
3,383,786	-		IAI47_16020	0.39	-1.4
3,383,786	-		IAI47_16020	0.39	+0.2
3,383,796	-		IAI47_16020	0.40	+0.5
3,383,796	-		IAI47_16020	0.40	+1.1
3,383,796	-		IAI47_16020	0.40	+0.9
3,383,796	-		IAI47_16020	0.40	+0.1
3,383,804	+		IAI47_16020	0.40	+0.2
3,383,804	+		IAI47_16020	0.40	+3.3
3,383,804	+		IAI47_16020	0.40	+0.5
3,383,804	+		IAI47_16020	0.40	-0.2
3,383,804	+		IAI47_16020	0.40	-0.5
3,383,804	+		IAI47_16020	0.40	-0.4
3,383,805	-		IAI47_16020	0.40	-1.2
3,383,805	-		IAI47_16020	0.40	+1.0
3,383,805	-		IAI47_16020	0.40	-2.9
3,383,805	-		IAI47_16020	0.40	+0.7
3,383,805	-		IAI47_16020	0.40	+0.8
3,383,806	+		IAI47_16020	0.41	-1.3
3,383,806	+		IAI47_16020	0.41	+0.2
3,383,806	+		IAI47_16020	0.41	-1.6
3,383,806	+		IAI47_16020	0.41	+0.6
3,383,806	+		IAI47_16020	0.41	-0.8
3,383,806	+		IAI47_16020	0.41	+1.1
3,383,806	+		IAI47_16020	0.41	+2.3
3,383,806	+		IAI47_16020	0.41	-1.9
3,383,807	-		IAI47_16020	0.41	+0.3
3,383,807	-		IAI47_16020	0.41	-0.7
3,383,807	-		IAI47_16020	0.41	+1.0
3,383,807	-		IAI47_16020	0.41	+0.0
3,383,807	-		IAI47_16020	0.41	+0.0
3,383,936	+		IAI47_16020	0.52	+2.5
3,383,954	+		IAI47_16020	0.53	-0.8
3,383,954	+		IAI47_16020	0.53	+0.5
3,383,954	+		IAI47_16020	0.53	+1.3
3,383,954	+		IAI47_16020	0.53	-0.6
3,383,955	-		IAI47_16020	0.53	-0.5
3,383,955	-		IAI47_16020	0.53	+2.9
3,383,955	-		IAI47_16020	0.53	-0.9
3,383,955	-		IAI47_16020	0.53	-0.1
3,383,984	+		IAI47_16020	0.56	-0.4
3,383,984	+		IAI47_16020	0.56	-0.2
3,383,984	+		IAI47_16020	0.56	-2.1
3,383,984	+		IAI47_16020	0.56	-0.6
3,383,984	+		IAI47_16020	0.56	+1.9
3,383,984	+		IAI47_16020	0.56	+2.5
3,383,985	-		IAI47_16020	0.56	-0.2
3,383,985	-		IAI47_16020	0.56	+0.3
3,383,985	-		IAI47_16020	0.56	-0.3
3,383,985	-		IAI47_16020	0.56	+1.8
3,383,985	-		IAI47_16020	0.56	+0.0
3,384,115	+		IAI47_16020	0.67	+0.2
3,384,115	+		IAI47_16020	0.67	+0.1
3,384,115	+		IAI47_16020	0.67	-0.7
3,384,116	-		IAI47_16020	0.67	-1.2
3,384,116	-		IAI47_16020	0.67	+1.1
3,384,147	-		IAI47_16020	0.69	+0.6
3,384,174	+		IAI47_16020	0.72	+1.4
3,384,174	+		IAI47_16020	0.72	+1.5
3,384,174	+		IAI47_16020	0.72	+1.0
3,384,174	+		IAI47_16020	0.72	-1.5
3,384,174	+		IAI47_16020	0.72	+0.7
3,384,175	-		IAI47_16020	0.72	+0.5
3,384,175	-		IAI47_16020	0.72	+0.2
3,384,175	-		IAI47_16020	0.72	-0.4
3,384,175	-		IAI47_16020	0.72	-0.6
3,384,175	-		IAI47_16020	0.72	-0.2
3,384,175	-		IAI47_16020	0.72	+0.4
3,384,199	+		IAI47_16020	0.74	+0.8
3,384,199	+		IAI47_16020	0.74	+0.8
3,384,199	+		IAI47_16020	0.74	-1.6
3,384,200	-		IAI47_16020	0.74	+0.6
3,384,200	-		IAI47_16020	0.74	-0.8
3,384,200	-		IAI47_16020	0.74	+0.0
3,384,222	+		IAI47_16020	0.76	-2.0
3,384,264	-		IAI47_16020	0.79	-0.2
3,384,264	-		IAI47_16020	0.79	-0.7
3,384,264	-		IAI47_16020	0.79	-2.2
3,384,264	-		IAI47_16020	0.79	-0.7
3,384,308	+		IAI47_16020	0.83	-1.0
3,384,308	+		IAI47_16020	0.83	+0.8
3,384,308	+		IAI47_16020	0.83	+0.6
3,384,308	+		IAI47_16020	0.83	+0.5
3,384,308	+		IAI47_16020	0.83	+1.7
3,384,309	-		IAI47_16020	0.83	-2.7
3,384,309	-		IAI47_16020	0.83	+1.1
3,384,309	-		IAI47_16020	0.83	+1.9
3,384,309	-		IAI47_16020	0.83	+0.9
3,384,309	-		IAI47_16020	0.83	+0.4
3,384,309	-		IAI47_16020	0.83	+0.4
3,384,309	-		IAI47_16020	0.83	+1.6
3,384,309	-		IAI47_16020	0.83	+0.0
3,384,309	-		IAI47_16020	0.83	-1.9
3,384,309	-		IAI47_16020	0.83	-0.2
3,384,316	-		IAI47_16020	0.84	-0.6
3,384,316	-		IAI47_16020	0.84	+1.7
3,384,316	-		IAI47_16020	0.84	-0.1
3,384,316	-		IAI47_16020	0.84	+0.8
3,384,316	-		IAI47_16020	0.84	+1.2
3,384,335	+		IAI47_16020	0.85	+0.6
3,384,335	+		IAI47_16020	0.85	+0.7
3,384,335	+		IAI47_16020	0.85	-0.6
3,384,336	-		IAI47_16020	0.85	+0.8
3,384,336	-		IAI47_16020	0.85	-2.0
3,384,375	+		IAI47_16020	0.89	-2.7
3,384,452	+				-1.0
3,384,452	+				-1.1
3,384,453	-				+1.7
3,384,453	-				+0.3
3,384,453	-				-2.4
3,384,492	+				-0.4
3,384,518	+				+0.9
3,384,549	+				+0.9
3,384,549	+				-1.0
3,384,550	-				-0.2
3,384,603	+				+0.0
3,384,603	+				-1.1
3,384,604	-				-0.2
3,384,604	-				+0.1
3,384,604	-				+0.5
3,384,604	-				-0.5
3,384,614	+				+0.8
3,384,692	+				+1.1
3,384,697	+				+0.5
3,384,698	-				+1.5
3,384,698	-				+0.4
3,384,759	+				+0.0
3,384,759	+				-0.1
3,384,759	+				-0.1
3,384,831	+				+0.7
3,384,831	+				+0.8
3,384,831	+				+0.3
3,384,831	+				+0.4
3,384,832	-				-0.7
3,384,832	-				+0.6
3,384,832	-				-0.2
3,384,876	+				-1.7
3,384,877	-				+0.0
3,384,877	-				-0.2
3,384,960	+		IAI47_16025	0.12	-1.2
3,384,960	+		IAI47_16025	0.12	+1.7
3,384,960	+		IAI47_16025	0.12	+0.2
3,384,960	+		IAI47_16025	0.12	+0.4
3,384,961	-		IAI47_16025	0.12	-0.2
3,384,961	-		IAI47_16025	0.12	-0.8
3,385,056	+		IAI47_16025	0.18	-0.2
3,385,057	-		IAI47_16025	0.18	-2.4
3,385,119	+		IAI47_16025	0.22	-1.7
3,385,119	+		IAI47_16025	0.22	-0.6
3,385,119	+		IAI47_16025	0.22	+0.7
3,385,119	+		IAI47_16025	0.22	+0.1
3,385,120	-		IAI47_16025	0.22	-1.1
3,385,120	-		IAI47_16025	0.22	-1.2
3,385,120	-		IAI47_16025	0.22	+1.1
3,385,120	-		IAI47_16025	0.22	+0.1
3,385,135	+		IAI47_16025	0.23	+1.7
3,385,135	+		IAI47_16025	0.23	-1.4
3,385,135	+		IAI47_16025	0.23	+0.6
3,385,136	-		IAI47_16025	0.23	+0.2
3,385,136	-		IAI47_16025	0.23	-0.1
3,385,136	-		IAI47_16025	0.23	+0.5
3,385,136	-		IAI47_16025	0.23	-0.8
3,385,136	-		IAI47_16025	0.23	+0.5
3,385,136	-		IAI47_16025	0.23	+0.3
3,385,139	-		IAI47_16025	0.23	+1.6
3,385,139	-		IAI47_16025	0.23	+0.0
3,385,139	-		IAI47_16025	0.23	-1.6
3,385,230	-		IAI47_16025	0.28	-1.4