Strain Fitness in Pantoea sp. MT58 around IAI47_05870

Experiment: nitrogen source nitrite 0.5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 0.5mM
1,207,165	+		IAI47_05865	0.15	+4.1
1,207,166	-		IAI47_05865	0.15	-0.7
1,207,166	-		IAI47_05865	0.15	-0.0
1,207,191	+		IAI47_05865	0.19	+0.7
1,207,191	+		IAI47_05865	0.19	+0.2
1,207,191	+		IAI47_05865	0.19	+2.4
1,207,191	+		IAI47_05865	0.19	+2.2
1,207,191	+		IAI47_05865	0.19	+2.0
1,207,191	+		IAI47_05865	0.19	+2.4
1,207,191	+		IAI47_05865	0.19	+2.1
1,207,191	+		IAI47_05865	0.19	+0.5
1,207,191	+		IAI47_05865	0.19	+2.7
1,207,192	-		IAI47_05865	0.20	+2.6
1,207,192	-		IAI47_05865	0.20	+2.8
1,207,192	-		IAI47_05865	0.20	+3.8
1,207,192	-		IAI47_05865	0.20	+1.5
1,207,192	-		IAI47_05865	0.20	+2.0
1,207,192	-		IAI47_05865	0.20	+0.9
1,207,192	-		IAI47_05865	0.20	+0.8
1,207,209	+		IAI47_05865	0.22	+2.0
1,207,209	+		IAI47_05865	0.22	+0.8
1,207,209	+		IAI47_05865	0.22	+0.6
1,207,210	-		IAI47_05865	0.22	+1.4
1,207,210	-		IAI47_05865	0.22	+2.1
1,207,238	+		IAI47_05865	0.27	-2.1
1,207,238	+		IAI47_05865	0.27	+2.6
1,207,239	-		IAI47_05865	0.27	+3.6
1,207,306	+		IAI47_05865	0.38	+3.4
1,207,314	+		IAI47_05865	0.39	+2.3
1,207,314	+		IAI47_05865	0.39	+0.4
1,207,314	+		IAI47_05865	0.39	+0.1
1,207,315	-		IAI47_05865	0.39	-0.3
1,207,365	+		IAI47_05865	0.47	+1.4
1,207,365	+		IAI47_05865	0.47	+3.5
1,207,366	-		IAI47_05865	0.47	+0.4
1,207,366	-		IAI47_05865	0.47	-1.4
1,207,366	-		IAI47_05865	0.47	-0.1
1,207,366	-		IAI47_05865	0.47	+2.8
1,207,391	-		IAI47_05865	0.51	+0.2
1,207,470	+		IAI47_05865	0.64	+0.4
1,207,470	+		IAI47_05865	0.64	+0.4
1,207,471	-		IAI47_05865	0.64	+2.3
1,207,471	-		IAI47_05865	0.64	+2.5
1,207,507	-		IAI47_05865	0.70	+2.7
1,207,507	-		IAI47_05865	0.70	+2.2
1,207,515	+		IAI47_05865	0.71	+2.4
1,207,515	+		IAI47_05865	0.71	+2.8
1,207,515	+		IAI47_05865	0.71	+0.4
1,207,515	+		IAI47_05865	0.71	+3.5
1,207,516	-		IAI47_05865	0.71	+2.5
1,207,521	-		IAI47_05865	0.72	+3.6
1,207,565	+		IAI47_05865	0.79	+1.3
1,207,565	+		IAI47_05865	0.79	+1.8
1,207,566	-		IAI47_05865	0.79	+0.3
1,207,566	-		IAI47_05865	0.79	+1.5
1,207,566	-		IAI47_05865	0.79	+0.7
1,207,566	-		IAI47_05865	0.79	+1.2
1,207,566	-		IAI47_05865	0.79	+1.4
1,207,568	+		IAI47_05865	0.80	+0.6
1,207,569	-		IAI47_05865	0.80	-1.9
1,207,651	+				-0.4
1,207,652	-				+1.4
1,207,695	+				+1.3
1,207,695	+				+0.2
1,207,696	-				+0.3
1,207,697	+				+2.1
1,207,698	-				-1.0
1,207,748	-				+2.1
1,207,803	+				-1.3
1,207,803	+				-0.1
1,207,803	+				-0.0
1,207,804	-				+1.7
1,207,880	+				+0.8
1,207,880	+				+0.2
1,207,880	+				+0.4
1,207,881	-				+1.3
1,207,881	-				-0.6
1,207,881	-				+0.6
1,207,881	-				-0.0
1,207,881	-				-0.9
1,207,886	+				-0.8
1,207,887	-				-1.3
1,207,887	-				-1.4
1,207,889	+				+2.3
1,207,889	+				+1.1
1,207,889	+				+0.4
1,207,889	+				+1.2
1,207,889	+				+1.0
1,207,889	+				+0.4
1,207,889	+				+0.2
1,207,890	-				+1.3
1,207,890	-				+0.3
1,207,890	-				+1.3
1,207,890	-				-1.2
1,207,890	-				+0.5
1,207,912	+				+0.9
1,207,912	+				+1.8
1,207,913	-				-0.2
1,207,913	-				+0.8
1,207,913	-				-1.6
1,207,992	+				+0.3
1,207,992	+				-2.5
1,207,992	+				+0.1
1,207,992	+				+1.1
1,207,993	-				+0.2
1,207,993	-				-0.2
1,207,998	+				+0.7
1,207,998	+				-0.9
1,207,999	-				-0.3
1,207,999	-				-1.4
1,208,023	+				-1.4
1,208,024	-				-0.1
1,208,024	-				-1.5
1,208,024	-				+0.4
1,208,024	-				+1.3
1,208,030	+				+0.0
1,208,031	-				+0.0
1,208,031	-				-0.5
1,208,060	+				-0.8
1,208,080	-				+0.2
1,208,080	-				-0.7
1,208,116	+				+0.8
1,208,117	-				-1.1
1,208,117	-				+0.4
1,208,153	+				-1.9
1,208,154	-				+1.3
1,208,154	-				-0.1
1,208,154	-				+0.2
1,208,157	+				+2.0
1,208,159	+				+1.5
1,208,159	+				-0.2
1,208,159	+				-3.0
1,208,159	+				+0.5
1,208,159	+				-1.1
1,208,160	-				-1.3
1,208,160	-				-1.3
1,208,160	-				-0.6
1,208,160	-				+0.7
1,208,187	+		IAI47_05870	0.16	+0.9
1,208,187	+		IAI47_05870	0.16	-0.8
1,208,187	+		IAI47_05870	0.16	+1.9
1,208,188	-		IAI47_05870	0.16	-0.5
1,208,188	-		IAI47_05870	0.16	+1.7
1,208,188	-		IAI47_05870	0.16	-2.5
1,208,188	-		IAI47_05870	0.16	-1.2
1,208,233	+		IAI47_05870	0.35	+0.8
1,208,234	-		IAI47_05870	0.35	-0.2
1,208,234	-		IAI47_05870	0.35	+0.0
1,208,296	+		IAI47_05870	0.61	+0.3
1,208,310	+		IAI47_05870	0.67	+1.1
1,208,311	-		IAI47_05870	0.67	+1.0
1,208,313	+		IAI47_05870	0.68	-0.8
1,208,313	+		IAI47_05870	0.68	+1.7
1,208,313	+		IAI47_05870	0.68	+0.1
1,208,313	+		IAI47_05870	0.68	+1.5
1,208,314	-		IAI47_05870	0.68	+1.0
1,208,314	-		IAI47_05870	0.68	+0.3
1,208,314	-		IAI47_05870	0.68	+1.1
1,208,314	-		IAI47_05870	0.68	-0.1
1,208,314	-		IAI47_05870	0.68	+0.7
1,208,332	+		IAI47_05870	0.76	-1.7
1,208,333	-		IAI47_05870	0.76	-0.5
1,208,388	+				+2.0
1,208,399	+				+0.8
1,208,399	+				+1.0
1,208,399	+				+1.9
1,208,399	+				-0.4
1,208,399	+				+3.1
1,208,400	-				-0.7
1,208,400	-				-0.6
1,208,400	-				+1.8
1,208,400	-				+1.0
1,208,400	-				+0.4
1,208,400	-				-0.3
1,208,400	-				-0.0
1,208,421	-				+1.2
1,208,421	-				+1.3
1,208,425	+				+2.1
1,208,425	+				+0.3
1,208,425	+				+1.8
1,208,425	+				-0.0
1,208,425	+				+0.0
1,208,425	+				+1.0
1,208,425	+				+2.8
1,208,425	+				-1.6
1,208,426	-				-1.3
1,208,426	-				+0.2
1,208,426	-				+3.2
1,208,426	-				+1.0
1,208,426	-				+0.6
1,208,426	-				+0.3
1,208,426	-				-0.9
1,208,450	+				+0.6
1,208,450	+				+0.5
1,208,450	+				-1.1
1,208,450	+				+2.7
1,208,450	+				+1.9
1,208,450	+				+0.1
1,208,450	+				-0.3
1,208,450	+				-0.3
1,208,450	+				+2.4
1,208,450	+				+0.2
1,208,450	+				-0.6
1,208,450	+				+2.0
1,208,450	+				+2.6
1,208,450	+				-2.1
1,208,451	-		IAI47_05875	0.10	+1.0
1,208,451	-		IAI47_05875	0.10	-0.3
1,208,451	-		IAI47_05875	0.10	+1.4
1,208,451	-		IAI47_05875	0.10	+0.9
1,208,451	-		IAI47_05875	0.10	+0.6
1,208,451	-		IAI47_05875	0.10	-0.6
1,208,451	-		IAI47_05875	0.10	+1.4
1,208,451	-		IAI47_05875	0.10	+2.0
1,208,451	-		IAI47_05875	0.10	-0.3
1,208,462	+		IAI47_05875	0.12	-0.7
1,208,462	+		IAI47_05875	0.12	+1.1
1,208,468	-		IAI47_05875	0.13	+2.5
1,208,468	-		IAI47_05875	0.13	+1.7
1,208,468	-		IAI47_05875	0.13	+0.1
1,208,491	+		IAI47_05875	0.18	-0.9
1,208,491	+		IAI47_05875	0.18	+0.4
1,208,491	+		IAI47_05875	0.18	-0.6
1,208,492	-		IAI47_05875	0.18	+0.3
1,208,503	+		IAI47_05875	0.20	+1.3
1,208,503	+		IAI47_05875	0.20	+0.2
1,208,505	+		IAI47_05875	0.21	+0.2
1,208,505	+		IAI47_05875	0.21	+1.3
1,208,505	+		IAI47_05875	0.21	+1.4
1,208,505	+		IAI47_05875	0.21	-2.1
1,208,505	+		IAI47_05875	0.21	+0.1
1,208,505	+		IAI47_05875	0.21	+0.4
1,208,506	-		IAI47_05875	0.21	+0.4
1,208,506	-		IAI47_05875	0.21	+0.7
1,208,506	-		IAI47_05875	0.21	+1.2
1,208,514	+		IAI47_05875	0.23	-0.4
1,208,514	+		IAI47_05875	0.23	+0.8
1,208,514	+		IAI47_05875	0.23	+1.0
1,208,515	-		IAI47_05875	0.23	-1.7
1,208,515	-		IAI47_05875	0.23	+1.1
1,208,515	-		IAI47_05875	0.23	-0.6
1,208,587	-		IAI47_05875	0.37	-0.4
1,208,637	-		IAI47_05875	0.47	-0.6
1,208,659	+		IAI47_05875	0.51	-0.0
1,208,660	-		IAI47_05875	0.52	+0.7
1,208,660	-		IAI47_05875	0.52	+1.0
1,208,665	+		IAI47_05875	0.53	+1.0
1,208,679	+		IAI47_05875	0.55	+1.5
1,208,680	-		IAI47_05875	0.56	-1.7
1,208,680	-		IAI47_05875	0.56	+0.8
1,208,680	-		IAI47_05875	0.56	-0.8
1,208,680	-		IAI47_05875	0.56	+1.4
1,208,698	-		IAI47_05875	0.59	-0.6
1,208,698	-		IAI47_05875	0.59	+1.9
1,208,709	+		IAI47_05875	0.61	+0.4
1,208,709	+		IAI47_05875	0.61	-1.1
1,208,709	+		IAI47_05875	0.61	-1.1
1,208,709	+		IAI47_05875	0.61	+1.8
1,208,709	+		IAI47_05875	0.61	+0.6
1,208,709	+		IAI47_05875	0.61	-0.9
1,208,709	+		IAI47_05875	0.61	-0.2
1,208,709	+		IAI47_05875	0.61	+2.0
1,208,709	+		IAI47_05875	0.61	-0.8
1,208,709	+		IAI47_05875	0.61	+0.3
1,208,710	-		IAI47_05875	0.62	+0.1
1,208,710	-		IAI47_05875	0.62	-0.4
1,208,710	-		IAI47_05875	0.62	+1.3
1,208,710	-		IAI47_05875	0.62	+0.8
1,208,710	-		IAI47_05875	0.62	+1.8
1,208,711	+		IAI47_05875	0.62	+2.7
1,208,712	-		IAI47_05875	0.62	+0.5
1,208,759	+		IAI47_05875	0.71	+1.0
1,208,760	-		IAI47_05875	0.71	+0.2
1,208,760	-		IAI47_05875	0.71	+1.4
1,208,760	-		IAI47_05875	0.71	+0.3
1,208,760	-		IAI47_05875	0.71	+1.7
1,208,760	-		IAI47_05875	0.71	+3.6
1,208,808	+		IAI47_05875	0.81	-0.8
1,208,809	-		IAI47_05875	0.81	+1.6
1,208,809	-		IAI47_05875	0.81	+2.0
1,208,836	+		IAI47_05875	0.87	-0.8
1,208,837	-		IAI47_05875	0.87	+1.0
1,208,837	-		IAI47_05875	0.87	+1.5
1,208,837	-		IAI47_05875	0.87	-0.5
1,208,864	+				+0.1
1,208,864	+				-0.3
1,208,864	+				+0.6
1,208,864	+				+0.7
1,208,864	+				-0.3
1,208,864	+				+0.9
1,208,864	+				-0.6
1,208,864	+				-0.1
1,208,865	-				+0.5
1,208,865	-				+1.0
1,208,865	-				-0.8
1,208,865	-				-0.8
1,208,865	-				+0.9
1,208,865	-				+0.8
1,208,865	-				+0.5
1,208,865	-				+0.9
1,208,865	-				+1.6
1,208,865	-				-0.1
1,208,894	+				+0.6
1,208,894	+				-0.1
1,208,894	+				-1.4
1,208,895	-				+0.8
1,208,895	-				+1.1
1,208,942	+		IAI47_05880	0.12	+0.7
1,208,942	+		IAI47_05880	0.12	+2.1
1,208,943	-		IAI47_05880	0.12	-0.6
1,208,943	-		IAI47_05880	0.12	-1.2
1,208,954	+		IAI47_05880	0.14	+1.5
1,208,969	-		IAI47_05880	0.17	-0.7
1,208,972	-		IAI47_05880	0.18	+1.0
1,208,972	-		IAI47_05880	0.18	-1.2
1,208,992	+		IAI47_05880	0.22	+1.6
1,209,027	+		IAI47_05880	0.30	+1.3
1,209,027	+		IAI47_05880	0.30	+0.5
1,209,028	-		IAI47_05880	0.30	+0.4
1,209,028	-		IAI47_05880	0.30	+1.7
1,209,028	-		IAI47_05880	0.30	+1.6
1,209,054	+		IAI47_05880	0.35	+0.7
1,209,055	-		IAI47_05880	0.36	+1.4
1,209,055	-		IAI47_05880	0.36	-0.7
1,209,097	+		IAI47_05880	0.45	+1.3
1,209,110	+		IAI47_05880	0.47	+0.3
1,209,110	+		IAI47_05880	0.47	+0.8
1,209,111	-		IAI47_05880	0.48	+0.8
1,209,121	-		IAI47_05880	0.50	+2.4
1,209,121	-		IAI47_05880	0.50	+1.0
1,209,121	-		IAI47_05880	0.50	+1.4
1,209,121	-		IAI47_05880	0.50	+0.2
1,209,130	-		IAI47_05880	0.52	+1.6
1,209,156	+		IAI47_05880	0.57	-0.3
1,209,156	+		IAI47_05880	0.57	+0.8
1,209,156	+		IAI47_05880	0.57	+0.6
1,209,157	-		IAI47_05880	0.57	+0.2
1,209,157	-		IAI47_05880	0.57	-0.9
1,209,181	-		IAI47_05880	0.62	+2.0
1,209,181	-		IAI47_05880	0.62	+1.1
1,209,249	+		IAI47_05880	0.77	+0.9
1,209,250	-		IAI47_05880	0.77	-0.8
1,209,271	+		IAI47_05880	0.82	-1.5
1,209,272	-		IAI47_05880	0.82	+0.1
1,209,314	+				+1.2
1,209,331	+				+0.3
1,209,331	+				-0.2
1,209,331	+				+1.0
1,209,331	+				-0.4
1,209,331	+				+1.2
1,209,331	+				+0.8
1,209,331	+				+2.0
1,209,331	+				+0.5
1,209,332	-				+0.8
1,209,332	-				+2.3
1,209,332	-				-0.1
1,209,332	-				-1.1
1,209,332	-				-0.2
1,209,332	-				-0.1
1,209,332	-				+1.0
1,209,338	-				-1.4
1,209,338	-				-0.7
1,209,338	-				+1.3
1,209,338	-				+1.4
1,209,338	-				-0.0
1,209,356	-				+1.1