Strain Fitness in Pantoea sp. MT58 around IAI47_04975

Experiment: nitrogen source nitrite 0.5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 0.5mM
1,045,164	+		IAI47_04970	0.34	+1.5
1,045,164	+		IAI47_04970	0.34	-1.5
1,045,164	+		IAI47_04970	0.34	+0.5
1,045,165	-		IAI47_04970	0.34	-0.0
1,045,165	-		IAI47_04970	0.34	+2.5
1,045,165	-		IAI47_04970	0.34	-1.5
1,045,165	-		IAI47_04970	0.34	-1.0
1,045,165	-		IAI47_04970	0.34	-3.0
1,045,257	+		IAI47_04970	0.41	+0.9
1,045,258	-		IAI47_04970	0.41	+1.2
1,045,353	+		IAI47_04970	0.49	-1.1
1,045,353	+		IAI47_04970	0.49	-1.6
1,045,353	+		IAI47_04970	0.49	-0.5
1,045,353	+		IAI47_04970	0.49	+0.2
1,045,353	+				+2.2
1,045,353	+		IAI47_04970	0.49	+1.0
1,045,353	+		IAI47_04970	0.49	+1.9
1,045,353	+		IAI47_04970	0.49	+0.0
1,045,353	+		IAI47_04970	0.49	+0.4
1,045,353	+		IAI47_04970	0.49	-0.2
1,045,353	+		IAI47_04970	0.49	+0.3
1,045,354	-		IAI47_04970	0.49	+0.8
1,045,354	-		IAI47_04970	0.49	+0.9
1,045,354	-		IAI47_04970	0.49	+0.8
1,045,354	-		IAI47_04970	0.49	+0.5
1,045,354	-		IAI47_04970	0.49	+0.6
1,045,354	-		IAI47_04970	0.49	-0.7
1,045,354	-		IAI47_04970	0.49	+0.1
1,045,354	-		IAI47_04970	0.49	+0.4
1,045,354	-		IAI47_04970	0.49	-0.9
1,045,357	+		IAI47_04970	0.49	-2.8
1,045,357	+		IAI47_04970	0.49	+0.1
1,045,357	+		IAI47_04970	0.49	+1.4
1,045,357	+		IAI47_04970	0.49	+1.3
1,045,357	+		IAI47_04970	0.49	+0.6
1,045,357	+		IAI47_04970	0.49	+0.9
1,045,357	+		IAI47_04970	0.49	+0.2
1,045,357	+		IAI47_04970	0.49	+0.2
1,045,358	-		IAI47_04970	0.49	+0.5
1,045,358	-		IAI47_04970	0.49	+1.2
1,045,358	-		IAI47_04970	0.49	+0.5
1,045,358	-		IAI47_04970	0.49	+1.0
1,045,358	-		IAI47_04970	0.49	-0.2
1,045,358	-		IAI47_04970	0.49	-0.1
1,045,358	-		IAI47_04970	0.49	+0.3
1,045,358	-		IAI47_04970	0.49	-0.0
1,045,358	-		IAI47_04970	0.49	-0.5
1,045,410	+		IAI47_04970	0.53	+2.1
1,045,410	+		IAI47_04970	0.53	-1.7
1,045,410	+		IAI47_04970	0.53	+0.2
1,045,411	-		IAI47_04970	0.53	-0.7
1,045,411	-		IAI47_04970	0.53	-1.8
1,045,411	-		IAI47_04970	0.53	+1.0
1,045,431	+		IAI47_04970	0.55	-0.4
1,045,433	+		IAI47_04970	0.55	+1.0
1,045,433	+		IAI47_04970	0.55	-0.6
1,045,433	+		IAI47_04970	0.55	-0.4
1,045,434	-		IAI47_04970	0.55	+0.3
1,045,434	-		IAI47_04970	0.55	-1.3
1,045,529	+		IAI47_04970	0.63	+0.0
1,045,529	+		IAI47_04970	0.63	+1.3
1,045,529	+		IAI47_04970	0.63	-0.9
1,045,529	+		IAI47_04970	0.63	-0.6
1,045,529	+		IAI47_04970	0.63	+0.3
1,045,530	-		IAI47_04970	0.63	+0.9
1,045,530	-		IAI47_04970	0.63	+2.8
1,045,530	-		IAI47_04970	0.63	-2.0
1,045,530	-		IAI47_04970	0.63	-1.0
1,045,530	-		IAI47_04970	0.63	-0.5
1,045,530	-		IAI47_04970	0.63	+0.8
1,045,530	-		IAI47_04970	0.63	+0.0
1,045,530	-		IAI47_04970	0.63	-0.4
1,045,530	-		IAI47_04970	0.63	+0.3
1,045,530	-		IAI47_04970	0.63	+0.0
1,045,530	-		IAI47_04970	0.63	-0.5
1,045,530	-		IAI47_04970	0.63	-1.4
1,045,540	+		IAI47_04970	0.64	+0.2
1,045,540	+		IAI47_04970	0.64	-0.4
1,045,540	+		IAI47_04970	0.64	-0.4
1,045,540	+		IAI47_04970	0.64	+0.1
1,045,540	+		IAI47_04970	0.64	-2.1
1,045,541	-		IAI47_04970	0.64	-0.7
1,045,541	-		IAI47_04970	0.64	+0.3
1,045,593	+		IAI47_04970	0.68	+0.1
1,045,593	+		IAI47_04970	0.68	-0.4
1,045,593	+		IAI47_04970	0.68	-0.8
1,045,593	+		IAI47_04970	0.68	+1.4
1,045,594	-		IAI47_04970	0.68	-2.1
1,045,594	-		IAI47_04970	0.68	-0.1
1,045,594	-		IAI47_04970	0.68	-0.5
1,045,615	+		IAI47_04970	0.70	+0.2
1,045,615	+		IAI47_04970	0.70	-1.4
1,045,615	+		IAI47_04970	0.70	-0.7
1,045,734	+		IAI47_04970	0.79	+0.1
1,045,734	+		IAI47_04970	0.79	+1.0
1,045,734	+		IAI47_04970	0.79	-0.7
1,045,734	+		IAI47_04970	0.79	+1.0
1,045,735	-		IAI47_04970	0.79	+1.2
1,045,735	-		IAI47_04970	0.79	+1.6
1,045,792	+		IAI47_04970	0.83	-0.1
1,045,792	+		IAI47_04970	0.83	-0.6
1,045,792	+		IAI47_04970	0.83	+2.2
1,045,792	+		IAI47_04970	0.83	+0.5
1,045,792	+		IAI47_04970	0.83	+0.4
1,045,792	+		IAI47_04970	0.83	-0.8
1,045,793	-		IAI47_04970	0.84	-0.5
1,045,793	-		IAI47_04970	0.84	+0.6
1,045,793	-		IAI47_04970	0.84	-0.0
1,045,828	+		IAI47_04970	0.86	+1.8
1,045,828	+		IAI47_04970	0.86	-0.8
1,045,828	+		IAI47_04970	0.86	-1.8
1,045,828	+		IAI47_04970	0.86	-2.2
1,045,828	+		IAI47_04970	0.86	+1.3
1,045,828	+		IAI47_04970	0.86	+0.7
1,045,828	+		IAI47_04970	0.86	-0.2
1,045,829	-		IAI47_04970	0.86	-1.2
1,045,829	-		IAI47_04970	0.86	-0.6
1,045,908	+				+0.9
1,045,908	+				-0.3
1,045,909	-				-2.1
1,045,909	-				+1.0
1,045,909	-				-1.4
1,045,939	+				-2.5
1,045,939	+				+1.4
1,045,939	+				-1.4
1,046,032	+				+0.4
1,046,032	+				+0.4
1,046,032	+				-1.0
1,046,032	+				-0.3
1,046,033	-				+0.3
1,046,033	-				-0.2
1,046,033	-				-0.2
1,046,033	-				-1.3
1,046,038	+				+0.1
1,046,038	+				-0.8
1,046,038	+				+2.5
1,046,038	+				-1.9
1,046,038	+				-1.3
1,046,038	+				-1.0
1,046,039	-				-0.3
1,046,039	-				+1.4
1,046,076	+				-1.0
1,046,076	+				-0.8
1,046,077	-				+1.2
1,046,077	-				-0.6
1,046,091	+				-0.4
1,046,092	-				-0.3
1,046,114	+				+0.3
1,046,114	+				+1.6
1,046,115	-				-0.9
1,046,118	+				-0.4
1,046,118	+				-2.4
1,046,118	+				-0.6
1,046,118	+				-1.3
1,046,118	+				+0.6
1,046,119	-				+0.2
1,046,148	+				+0.2
1,046,149	-				-1.9
1,046,149	-				+1.4
1,046,150	+				-3.1
1,046,151	-				+0.5
1,046,156	+				+0.6
1,046,182	+				+1.3
1,046,183	-				+1.2
1,046,188	+				+1.1
1,046,188	+				-0.4
1,046,188	+				+1.4
1,046,188	+				+1.9
1,046,189	-				+0.9
1,046,189	-				+0.5
1,046,189	-				+0.9
1,046,191	+				+0.4
1,046,191	+				-0.1
1,046,191	+				+1.0
1,046,191	+				+0.5
1,046,191	+				-1.7
1,046,191	+				+1.2
1,046,191	+				+1.1
1,046,191	+				+1.2
1,046,191	+				+0.3
1,046,191	+				-0.1
1,046,191	+				-3.4
1,046,192	-				+0.6
1,046,192	-				+0.8
1,046,192	-				+1.0
1,046,192	-				+1.6
1,046,192	-				+1.3
1,046,192	-				+0.1
1,046,228	-		IAI47_04975	0.11	+0.2
1,046,231	+		IAI47_04975	0.12	+0.4
1,046,257	-		IAI47_04975	0.16	-1.9
1,046,303	+		IAI47_04975	0.23	+0.4
1,046,303	+		IAI47_04975	0.23	-1.6
1,046,303	+		IAI47_04975	0.23	-1.3
1,046,304	-		IAI47_04975	0.23	+1.2
1,046,304	-		IAI47_04975	0.23	+0.7
1,046,304	-		IAI47_04975	0.23	-0.8
1,046,304	-		IAI47_04975	0.23	+1.4
1,046,322	+		IAI47_04975	0.26	+0.5
1,046,322	+		IAI47_04975	0.26	+0.2
1,046,322	+		IAI47_04975	0.26	+0.4
1,046,322	+		IAI47_04975	0.26	+1.3
1,046,322	+		IAI47_04975	0.26	-0.8
1,046,323	-		IAI47_04975	0.26	+0.8
1,046,323	-		IAI47_04975	0.26	+3.3
1,046,323	-		IAI47_04975	0.26	+0.2
1,046,353	+		IAI47_04975	0.31	+0.6
1,046,353	+		IAI47_04975	0.31	-1.7
1,046,353	+		IAI47_04975	0.31	-0.6
1,046,353	+		IAI47_04975	0.31	+1.7
1,046,353	+		IAI47_04975	0.31	+0.6
1,046,353	+		IAI47_04975	0.31	-1.4
1,046,353	+		IAI47_04975	0.31	+1.8
1,046,354	-		IAI47_04975	0.31	+1.2
1,046,354	-		IAI47_04975	0.31	-1.9
1,046,354	-		IAI47_04975	0.31	-0.1
1,046,354	-		IAI47_04975	0.31	+0.4
1,046,354	-		IAI47_04975	0.31	-0.1
1,046,354	-		IAI47_04975	0.31	+1.3
1,046,354	-		IAI47_04975	0.31	+1.2
1,046,354	-		IAI47_04975	0.31	+2.0
1,046,354	-		IAI47_04975	0.31	-0.2
1,046,406	+		IAI47_04975	0.40	+1.5
1,046,406	+		IAI47_04975	0.40	+1.0
1,046,406	+		IAI47_04975	0.40	+0.4
1,046,406	+		IAI47_04975	0.40	+0.5
1,046,406	+		IAI47_04975	0.40	-1.6
1,046,406	+		IAI47_04975	0.40	-1.5
1,046,407	-		IAI47_04975	0.40	+1.0
1,046,407	-		IAI47_04975	0.40	+0.6
1,046,407	-		IAI47_04975	0.40	+0.8
1,046,407	-		IAI47_04975	0.40	+1.4
1,046,407	-		IAI47_04975	0.40	-0.1
1,046,407	-		IAI47_04975	0.40	+1.1
1,046,407	-		IAI47_04975	0.40	+1.6
1,046,463	+		IAI47_04975	0.49	+0.3
1,046,466	+		IAI47_04975	0.49	+0.7
1,046,467	-		IAI47_04975	0.49	+0.8
1,046,467	-		IAI47_04975	0.49	+2.2
1,046,467	-		IAI47_04975	0.49	+1.0
1,046,467	-		IAI47_04975	0.49	+0.9
1,046,467	-		IAI47_04975	0.49	-1.7
1,046,467	-		IAI47_04975	0.49	+1.6
1,046,467	-		IAI47_04975	0.49	-0.1
1,046,468	+		IAI47_04975	0.50	+1.7
1,046,468	+		IAI47_04975	0.50	+1.0
1,046,469	-		IAI47_04975	0.50	-0.2
1,046,469	-		IAI47_04975	0.50	+0.5
1,046,469	-		IAI47_04975	0.50	-0.8
1,046,508	-		IAI47_04975	0.56	+1.3
1,046,508	-		IAI47_04975	0.56	+0.8
1,046,577	+		IAI47_04975	0.67	+0.4
1,046,577	+		IAI47_04975	0.67	+1.7
1,046,577	+		IAI47_04975	0.67	+0.2
1,046,578	-		IAI47_04975	0.67	+0.2
1,046,589	-		IAI47_04975	0.69	+0.2
1,046,660	+		IAI47_04975	0.80	+0.1
1,046,691	+		IAI47_04975	0.85	+0.9
1,046,691	+		IAI47_04975	0.85	+1.4
1,046,691	+		IAI47_04975	0.85	-0.6
1,046,691	+		IAI47_04975	0.85	+1.2
1,046,691	+		IAI47_04975	0.85	-0.8
1,046,692	-		IAI47_04975	0.85	+0.9
1,046,692	-		IAI47_04975	0.85	-1.3
1,046,692	-		IAI47_04975	0.85	+0.5
1,046,692	-		IAI47_04975	0.85	+1.3
1,046,692	-		IAI47_04975	0.85	+0.6
1,046,692	-		IAI47_04975	0.85	-0.6
1,046,740	+				+1.6
1,046,741	-				+1.6
1,046,741	-				-1.8
1,046,768	-				-0.9
1,046,768	-				-2.2
1,046,781	+				+0.3
1,046,781	+				-1.5
1,046,781	+				-0.4
1,046,782	-				+0.9
1,046,782	-				+0.2
1,046,830	-				+1.8
1,046,830	-				-0.5
1,046,830	-				+0.2
1,046,870	+				+1.2
1,046,871	-				+0.6
1,046,898	+		IAI47_04980	0.13	+0.2
1,046,898	+		IAI47_04980	0.13	-0.6
1,046,898	+		IAI47_04980	0.13	+1.0
1,046,898	+		IAI47_04980	0.13	-0.6
1,046,899	-		IAI47_04980	0.13	+0.6
1,046,899	-		IAI47_04980	0.13	-1.5
1,046,899	-		IAI47_04980	0.13	-0.0
1,046,899	-		IAI47_04980	0.13	+0.9
1,046,899	-		IAI47_04980	0.13	+2.4
1,046,941	-		IAI47_04980	0.17	-0.5
1,046,941	-		IAI47_04980	0.17	+0.8
1,046,976	+		IAI47_04980	0.21	+0.7
1,046,976	+		IAI47_04980	0.21	+0.4
1,046,989	-		IAI47_04980	0.22	-0.3
1,046,989	-		IAI47_04980	0.22	-0.8
1,046,989	-		IAI47_04980	0.22	+0.1
1,046,989	-		IAI47_04980	0.22	-1.8
1,047,002	+		IAI47_04980	0.23	-0.4
1,047,002	+		IAI47_04980	0.23	+0.0
1,047,002	+		IAI47_04980	0.23	+1.3
1,047,002	+		IAI47_04980	0.23	+1.0
1,047,003	-		IAI47_04980	0.23	+1.1
1,047,003	-		IAI47_04980	0.23	+0.9
1,047,091	+		IAI47_04980	0.33	+1.3
1,047,092	-		IAI47_04980	0.33	+1.2
1,047,092	-		IAI47_04980	0.33	+1.0
1,047,224	+		IAI47_04980	0.46	+1.7
1,047,224	+		IAI47_04980	0.46	+0.7
1,047,224	+		IAI47_04980	0.46	+1.8
1,047,224	+		IAI47_04980	0.46	+0.1
1,047,225	-		IAI47_04980	0.46	+1.6
1,047,225	-		IAI47_04980	0.46	+0.0
1,047,225	-		IAI47_04980	0.46	+0.9
1,047,225	-		IAI47_04980	0.46	+0.1
1,047,225	-		IAI47_04980	0.46	-2.0
1,047,312	+		IAI47_04980	0.55	-0.3
1,047,313	-		IAI47_04980	0.55	-2.5
1,047,447	+		IAI47_04980	0.69	+1.4
1,047,447	+		IAI47_04980	0.69	+0.7
1,047,447	+		IAI47_04980	0.69	+1.4
1,047,447	+		IAI47_04980	0.69	-0.1
1,047,447	+		IAI47_04980	0.69	+0.2
1,047,447	+		IAI47_04980	0.69	+0.2
1,047,447	+		IAI47_04980	0.69	+0.9
1,047,447	+		IAI47_04980	0.69	-0.3
1,047,447	+		IAI47_04980	0.69	-0.0
1,047,447	+		IAI47_04980	0.69	+1.2
1,047,447	+		IAI47_04980	0.69	-2.2
1,047,448	-		IAI47_04980	0.69	+1.7
1,047,448	-		IAI47_04980	0.69	+0.8
1,047,448	-		IAI47_04980	0.69	+0.6
1,047,448	-		IAI47_04980	0.69	-0.0
1,047,448	-		IAI47_04980	0.69	-0.8
1,047,448	-		IAI47_04980	0.69	-1.8
1,047,448	-		IAI47_04980	0.69	+1.0
1,047,448	-		IAI47_04980	0.69	-0.9
1,047,448	-		IAI47_04980	0.69	-2.5
1,047,448	-		IAI47_04980	0.69	-2.2
1,047,448	-		IAI47_04980	0.69	+0.1
1,047,448	-		IAI47_04980	0.69	+0.5
1,047,448	-		IAI47_04980	0.69	+1.6
1,047,469	+		IAI47_04980	0.71	+0.1
1,047,469	+		IAI47_04980	0.71	+0.3
1,047,470	-		IAI47_04980	0.71	+0.9
1,047,470	-		IAI47_04980	0.71	-3.3
1,047,470	-		IAI47_04980	0.71	-0.5
1,047,470	-		IAI47_04980	0.71	+0.7
1,047,597	+		IAI47_04980	0.84	+1.5
1,047,675	+				-0.6
1,047,675	+				-1.5
1,047,676	-				-1.6
1,047,676	-				-0.9
1,047,676	-				-1.6
1,047,676	-				-0.9
1,047,676	-				+1.5
1,047,676	-				+1.3
1,047,678	+				-1.7
1,047,678	+				-0.4
1,047,678	+				+0.0
1,047,679	-				-0.1
1,047,685	-				-0.6
1,047,691	+				-1.8
1,047,692	-				+0.0
1,047,699	+				-0.4
1,047,700	-				+0.0
1,047,700	-				+1.4
1,047,700	-				-1.5
1,047,782	+				-0.2