Strain Fitness in Pantoea sp. MT58 around IAI47_04905

Experiment: nitrogen source nitrite 0.5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 0.5mM
1,026,958	+		IAI47_04895	0.54	-0.8
1,027,010	+		IAI47_04895	0.61	-2.3
1,027,010	+		IAI47_04895	0.61	-2.8
1,027,010	+		IAI47_04895	0.61	-1.0
1,027,010	+		IAI47_04895	0.61	-2.1
1,027,010	+		IAI47_04895	0.61	+0.4
1,027,010	+		IAI47_04895	0.61	-3.3
1,027,024	+		IAI47_04895	0.63	-0.8
1,027,034	+		IAI47_04895	0.65	-2.5
1,027,126	+		IAI47_04895	0.77	-2.2
1,027,148	+		IAI47_04895	0.80	-2.8
1,027,148	+		IAI47_04895	0.80	-2.3
1,027,227	+				-1.7
1,027,227	+				-2.5
1,027,227	+				-2.2
1,027,669	+				-0.0
1,027,670	-				+1.5
1,027,731	+		IAI47_04905	0.25	-2.3
1,027,731	+		IAI47_04905	0.25	-1.6
1,027,731	+		IAI47_04905	0.25	+0.6
1,027,731	+		IAI47_04905	0.25	+0.2
1,027,731	+		IAI47_04905	0.25	-0.5
1,027,732	-		IAI47_04905	0.26	+0.8
1,027,732	-		IAI47_04905	0.26	+0.2
1,027,732	-		IAI47_04905	0.26	-1.4
1,027,732	-		IAI47_04905	0.26	-1.8
1,027,732	-		IAI47_04905	0.26	+1.0
1,027,736	+		IAI47_04905	0.27	+1.3
1,027,737	-		IAI47_04905	0.28	+0.5
1,027,737	-		IAI47_04905	0.28	+0.5
1,027,737	-		IAI47_04905	0.28	+0.1
1,027,737	-		IAI47_04905	0.28	-3.2
1,027,783	+		IAI47_04905	0.46	+0.6
1,027,783	+		IAI47_04905	0.46	-0.8
1,027,783	+		IAI47_04905	0.46	-1.1
1,027,825	+		IAI47_04905	0.63	+0.2
1,027,825	+		IAI47_04905	0.63	+1.3
1,027,825	+		IAI47_04905	0.63	+1.6
1,027,826	-		IAI47_04905	0.63	-2.1
1,027,826	-		IAI47_04905	0.63	+0.8
1,027,826	-		IAI47_04905	0.63	+1.4
1,027,877	+		IAI47_04905	0.84	+0.5
1,027,878	-		IAI47_04905	0.84	+0.5
1,027,878	-		IAI47_04905	0.84	-0.2
1,027,878	-		IAI47_04905	0.84	+0.2
1,027,878	-		IAI47_04905	0.84	+0.5
1,027,878	-		IAI47_04905	0.84	+1.1
1,027,878	-		IAI47_04905	0.84	+0.6
1,027,886	+		IAI47_04905	0.88	-0.1
1,027,886	+		IAI47_04905	0.88	-1.1
1,027,886	+		IAI47_04905	0.88	+1.4
1,027,886	+		IAI47_04905	0.88	-1.5
1,027,886	+		IAI47_04905	0.88	+1.1
1,027,886	+		IAI47_04905	0.88	+0.6
1,027,887	-		IAI47_04905	0.88	-0.4
1,027,887	-		IAI47_04905	0.88	-0.1
1,027,887	-		IAI47_04905	0.88	+0.2
1,027,901	+				-0.0
1,027,901	+				-1.5
1,027,902	-				+1.1
1,027,902	-				+0.3
1,027,902	-				-0.1
1,027,902	-				-0.3
1,027,919	+				+1.8
1,027,920	-				+0.1
1,027,920	-				+0.3
1,027,920	-				+0.2
1,027,920	-				+1.2
1,027,951	+				-0.6
1,027,954	+				+0.2
1,027,954	+				+0.3
1,027,954	+				-0.4
1,027,954	+				-0.9
1,027,954	+				-1.9
1,027,954	+				-1.8
1,027,955	-				+1.4
1,027,955	-				+0.1
1,027,955	-				-0.4
1,027,955	-				+0.7
1,027,955	-				+0.5
1,027,955	-				-0.5
1,027,955	-				-0.3
1,027,956	+				-0.4
1,027,956	+				-1.3
1,027,956	+				+0.9
1,027,956	+				+1.1
1,027,956	+				+1.4
1,027,956	+				+0.1
1,027,956	+				+0.3
1,027,956	+				+1.1
1,027,956	+				+1.1
1,027,957	-				+1.9
1,027,957	-				-0.1
1,027,957	-				+1.3
1,027,957	-				-0.0
1,027,957	-				-0.3
1,027,957	-				+1.1
1,027,957	-				+0.6
1,027,957	-				-0.1
1,027,957	-				+0.6
1,027,957	-				+0.8
1,027,957	-				-0.5
1,027,957	-				+0.5
1,027,957	-				+0.0
1,027,957	-				+1.1
1,027,957	-				+0.0
1,027,957	-				+0.9
1,027,957	-				-0.3
1,028,010	+				-0.1
1,028,010	+				+2.3
1,028,011	-				-1.9
1,028,052	+				-0.1
1,028,052	+				+0.9
1,028,053	-				+1.5
1,028,053	-				-0.4
1,028,112	+		IAI47_04910	0.17	-0.5
1,028,133	+		IAI47_04910	0.19	-1.4
1,028,133	+		IAI47_04910	0.19	+1.5
1,028,134	-		IAI47_04910	0.19	-0.3
1,028,134	-		IAI47_04910	0.19	+1.5
1,028,134	-		IAI47_04910	0.19	+1.5
1,028,134	-		IAI47_04910	0.19	-0.5
1,028,134	-		IAI47_04910	0.19	+1.9
1,028,135	+		IAI47_04910	0.19	+1.6
1,028,135	+		IAI47_04910	0.19	+0.4
1,028,136	-		IAI47_04910	0.20	-1.7
1,028,136	-		IAI47_04910	0.20	+1.2
1,028,136	-		IAI47_04910	0.20	-0.1
1,028,136	-		IAI47_04910	0.20	+0.6
1,028,136	-		IAI47_04910	0.20	+3.4
1,028,166	+		IAI47_04910	0.23	+0.3
1,028,167	-		IAI47_04910	0.23	+0.9
1,028,167	-		IAI47_04910	0.23	-0.3
1,028,258	+		IAI47_04910	0.34	+0.6
1,028,258	+		IAI47_04910	0.34	-1.5
1,028,258	+		IAI47_04910	0.34	+1.0
1,028,258	+		IAI47_04910	0.34	-1.4
1,028,258	+		IAI47_04910	0.34	+3.2
1,028,322	+		IAI47_04910	0.42	+1.4
1,028,322	+		IAI47_04910	0.42	-0.1
1,028,323	-		IAI47_04910	0.42	+0.5
1,028,323	-		IAI47_04910	0.42	-0.5
1,028,343	+		IAI47_04910	0.44	+0.9
1,028,343	+		IAI47_04910	0.44	+1.9
1,028,343	+		IAI47_04910	0.44	+1.0
1,028,343	+		IAI47_04910	0.44	+0.6
1,028,344	-		IAI47_04910	0.44	+1.0
1,028,344	-		IAI47_04910	0.44	+2.0
1,028,344	-		IAI47_04910	0.44	-0.1
1,028,344	-		IAI47_04910	0.44	+0.9
1,028,414	-		IAI47_04910	0.53	+0.9
1,028,414	-		IAI47_04910	0.53	+0.7
1,028,443	+		IAI47_04910	0.56	+1.3
1,028,443	+		IAI47_04910	0.56	-0.1
1,028,444	-		IAI47_04910	0.56	+2.2
1,028,444	-		IAI47_04910	0.56	+0.9
1,028,444	-		IAI47_04910	0.56	+1.3
1,028,469	+		IAI47_04910	0.59	+0.1
1,028,469	+		IAI47_04910	0.59	-1.4
1,028,469	+		IAI47_04910	0.59	-2.1
1,028,470	-		IAI47_04910	0.59	+1.1
1,028,472	+		IAI47_04910	0.60	-0.1
1,028,472	+		IAI47_04910	0.60	+0.3
1,028,472	+		IAI47_04910	0.60	+0.7
1,028,472	+		IAI47_04910	0.60	+0.9
1,028,472	+		IAI47_04910	0.60	+1.6
1,028,472	+		IAI47_04910	0.60	-0.8
1,028,472	+		IAI47_04910	0.60	+1.7
1,028,472	+		IAI47_04910	0.60	+0.1
1,028,472	+		IAI47_04910	0.60	+2.5
1,028,472	+		IAI47_04910	0.60	+0.9
1,028,472	+		IAI47_04910	0.60	-1.5
1,028,473	-		IAI47_04910	0.60	-1.0
1,028,473	-		IAI47_04910	0.60	-1.4
1,028,473	-		IAI47_04910	0.60	+0.4
1,028,473	-		IAI47_04910	0.60	-0.1
1,028,473	-		IAI47_04910	0.60	+1.6
1,028,473	-		IAI47_04910	0.60	+1.1
1,028,473	-		IAI47_04910	0.60	+1.8
1,028,473	-		IAI47_04910	0.60	+0.8
1,028,473	-		IAI47_04910	0.60	+0.1
1,028,475	+		IAI47_04910	0.60	+0.9
1,028,475	+		IAI47_04910	0.60	+0.4
1,028,476	-		IAI47_04910	0.60	+0.9
1,028,476	-		IAI47_04910	0.60	+0.1
1,028,476	-		IAI47_04910	0.60	+0.2
1,028,476	-		IAI47_04910	0.60	-0.2
1,028,535	+		IAI47_04910	0.67	-1.4
1,028,535	+		IAI47_04910	0.67	+0.8
1,028,556	+		IAI47_04910	0.70	+2.1
1,028,557	-		IAI47_04910	0.70	+0.6
1,028,557	-		IAI47_04910	0.70	+0.3
1,028,557	-		IAI47_04910	0.70	+1.5
1,028,557	-		IAI47_04910	0.70	+0.8
1,028,562	+		IAI47_04910	0.70	-0.7
1,028,563	-		IAI47_04910	0.70	+1.7
1,028,613	+		IAI47_04910	0.76	+1.2
1,028,614	-		IAI47_04910	0.76	+0.8
1,028,614	-		IAI47_04910	0.76	+0.9
1,028,614	-		IAI47_04910	0.76	-2.1
1,028,631	+		IAI47_04910	0.78	+0.6
1,028,631	+		IAI47_04910	0.78	-1.1
1,028,632	-		IAI47_04910	0.79	+0.8
1,028,632	-		IAI47_04910	0.79	-2.5
1,028,632	-		IAI47_04910	0.79	+0.1
1,028,633	+		IAI47_04910	0.79	+0.1
1,028,633	+		IAI47_04910	0.79	+1.0
1,028,634	-		IAI47_04910	0.79	+1.2
1,028,634	-		IAI47_04910	0.79	+0.3
1,028,634	-		IAI47_04910	0.79	+0.4
1,028,634	-		IAI47_04910	0.79	-0.0
1,028,738	-				+1.9
1,028,780	+				+0.4
1,028,781	-				+0.8
1,028,835	+				-0.7
1,028,849	+				+0.0
1,028,849	+				-0.6
1,028,850	-				+1.0
1,028,854	+				-2.1
1,028,855	-				-1.1
1,028,870	+				+1.9
1,028,871	-				-0.3
1,028,871	-				+1.5
1,028,871	-				+0.1
1,028,871	-				-1.1