Strain Fitness in Pantoea sp. MT58 around IAI47_04895

Experiment: nitrogen source nitrite 0.5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 0.5mM
1,025,737	+				+0.1
1,025,738	-				+0.7
1,025,739	+				+0.9
1,025,739	+				-2.9
1,025,739	+				+0.1
1,025,739	+				+0.7
1,025,739	+				-0.7
1,025,739	+				+0.1
1,025,740	-				+1.0
1,025,740	-				-0.3
1,025,740	-				-0.0
1,025,740	-				+1.2
1,025,740	-				-1.0
1,025,740	-				-0.2
1,025,740	-				-1.0
1,025,740	-				-0.4
1,025,740	-				-0.8
1,025,740	-				-0.9
1,025,740	-				-0.5
1,025,740	-				-1.3
1,025,740	-				+0.7
1,025,740	-				-2.6
1,025,740	-				+3.4
1,025,740	-				-0.3
1,025,740	-				+0.2
1,025,741	-				-2.1
1,025,791	+				+0.9
1,025,791	+				+0.3
1,025,791	+				+0.0
1,025,791	+				-0.4
1,025,791	+				+2.4
1,025,791	+				-0.9
1,025,792	-				-0.0
1,025,792	-				+0.1
1,025,792	-				-1.3
1,025,792	-				-0.7
1,025,792	-				-0.0
1,025,792	-				-0.5
1,025,792	-				+1.7
1,025,956	+		IAI47_04890	0.27	+0.0
1,025,957	-		IAI47_04890	0.27	+1.5
1,025,957	-		IAI47_04890	0.27	+0.8
1,026,018	-		IAI47_04890	0.36	-2.5
1,026,030	-		IAI47_04890	0.37	+0.3
1,026,030	-		IAI47_04890	0.37	-1.5
1,026,030	-		IAI47_04890	0.37	+0.2
1,026,054	+		IAI47_04890	0.40	-0.4
1,026,095	+		IAI47_04890	0.46	-0.7
1,026,096	-		IAI47_04890	0.46	-1.1
1,026,134	-		IAI47_04890	0.51	-0.8
1,026,241	+		IAI47_04890	0.66	+0.1
1,026,241	+		IAI47_04890	0.66	-1.5
1,026,241	+		IAI47_04890	0.66	+1.4
1,026,242	-		IAI47_04890	0.66	+1.1
1,026,242	-		IAI47_04890	0.66	+0.5
1,026,248	+		IAI47_04890	0.67	-2.3
1,026,248	+		IAI47_04890	0.67	-1.0
1,026,248	+		IAI47_04890	0.67	+1.2
1,026,248	+		IAI47_04890	0.67	-0.9
1,026,248	+		IAI47_04890	0.67	-3.0
1,026,248	+		IAI47_04890	0.67	+2.2
1,026,248	+		IAI47_04890	0.67	-0.5
1,026,248	+		IAI47_04890	0.67	-1.7
1,026,248	+		IAI47_04890	0.67	+1.3
1,026,248	+		IAI47_04890	0.67	-0.9
1,026,248	+		IAI47_04890	0.67	+0.3
1,026,248	+		IAI47_04890	0.67	-1.2
1,026,248	+		IAI47_04890	0.67	-1.9
1,026,249	-		IAI47_04890	0.67	-1.4
1,026,249	-		IAI47_04890	0.67	-2.1
1,026,249	-		IAI47_04890	0.67	-0.3
1,026,249	-		IAI47_04890	0.67	-0.4
1,026,249	-		IAI47_04890	0.67	+0.3
1,026,249	-		IAI47_04890	0.67	-2.6
1,026,249	-		IAI47_04890	0.67	+0.2
1,026,249	-		IAI47_04890	0.67	+0.3
1,026,249	-		IAI47_04890	0.67	-0.1
1,026,249	-		IAI47_04890	0.67	+0.1
1,026,249	-		IAI47_04890	0.67	+0.7
1,026,249	-		IAI47_04890	0.67	-0.5
1,026,249	-		IAI47_04890	0.67	+1.9
1,026,254	+		IAI47_04890	0.68	+1.1
1,026,255	-		IAI47_04890	0.68	+0.2
1,026,274	+		IAI47_04890	0.71	+0.3
1,026,274	+		IAI47_04890	0.71	-0.1
1,026,382	+		IAI47_04890	0.85	+0.4
1,026,383	-		IAI47_04890	0.86	+0.3
1,026,404	+		IAI47_04890	0.88	-0.5
1,026,404	+		IAI47_04890	0.88	-0.9
1,026,405	-		IAI47_04890	0.89	-0.2
1,026,451	+				+0.2
1,026,452	-				+0.9
1,026,485	+				-0.3
1,026,486	-				+1.3
1,026,497	+				+1.3
1,026,508	+				+1.1
1,026,509	-				-0.3
1,026,510	+				+3.8
1,026,521	+				+0.0
1,026,958	+		IAI47_04895	0.54	-0.8
1,027,010	+		IAI47_04895	0.61	-2.3
1,027,010	+		IAI47_04895	0.61	-2.8
1,027,010	+		IAI47_04895	0.61	-1.0
1,027,010	+		IAI47_04895	0.61	-2.1
1,027,010	+		IAI47_04895	0.61	+0.4
1,027,010	+		IAI47_04895	0.61	-3.3
1,027,024	+		IAI47_04895	0.63	-0.8
1,027,034	+		IAI47_04895	0.65	-2.5
1,027,126	+		IAI47_04895	0.77	-2.2
1,027,148	+		IAI47_04895	0.80	-2.8
1,027,148	+		IAI47_04895	0.80	-2.3
1,027,227	+				-1.7
1,027,227	+				-2.5
1,027,227	+				-2.2
1,027,669	+				-0.0
1,027,670	-				+1.5
1,027,731	+		IAI47_04905	0.25	-2.3
1,027,731	+		IAI47_04905	0.25	-1.6
1,027,731	+		IAI47_04905	0.25	+0.6
1,027,731	+		IAI47_04905	0.25	+0.2
1,027,731	+		IAI47_04905	0.25	-0.5
1,027,732	-		IAI47_04905	0.26	+0.8
1,027,732	-		IAI47_04905	0.26	+0.2
1,027,732	-		IAI47_04905	0.26	-1.4
1,027,732	-		IAI47_04905	0.26	-1.8
1,027,732	-		IAI47_04905	0.26	+1.0
1,027,736	+		IAI47_04905	0.27	+1.3
1,027,737	-		IAI47_04905	0.28	+0.5
1,027,737	-		IAI47_04905	0.28	+0.5
1,027,737	-		IAI47_04905	0.28	+0.1
1,027,737	-		IAI47_04905	0.28	-3.2
1,027,783	+		IAI47_04905	0.46	+0.6
1,027,783	+		IAI47_04905	0.46	-0.8
1,027,783	+		IAI47_04905	0.46	-1.1
1,027,825	+		IAI47_04905	0.63	+0.2
1,027,825	+		IAI47_04905	0.63	+1.3
1,027,825	+		IAI47_04905	0.63	+1.6
1,027,826	-		IAI47_04905	0.63	-2.1
1,027,826	-		IAI47_04905	0.63	+0.8
1,027,826	-		IAI47_04905	0.63	+1.4
1,027,877	+		IAI47_04905	0.84	+0.5
1,027,878	-		IAI47_04905	0.84	+0.5
1,027,878	-		IAI47_04905	0.84	-0.2
1,027,878	-		IAI47_04905	0.84	+0.2
1,027,878	-		IAI47_04905	0.84	+0.5
1,027,878	-		IAI47_04905	0.84	+1.1
1,027,878	-		IAI47_04905	0.84	+0.6
1,027,886	+		IAI47_04905	0.88	-0.1
1,027,886	+		IAI47_04905	0.88	-1.1
1,027,886	+		IAI47_04905	0.88	+1.4
1,027,886	+		IAI47_04905	0.88	-1.5
1,027,886	+		IAI47_04905	0.88	+1.1
1,027,886	+		IAI47_04905	0.88	+0.6
1,027,887	-		IAI47_04905	0.88	-0.4
1,027,887	-		IAI47_04905	0.88	-0.1
1,027,887	-		IAI47_04905	0.88	+0.2
1,027,901	+				-0.0
1,027,901	+				-1.5
1,027,902	-				+1.1
1,027,902	-				+0.3
1,027,902	-				-0.1
1,027,902	-				-0.3
1,027,919	+				+1.8
1,027,920	-				+0.1
1,027,920	-				+0.3
1,027,920	-				+0.2
1,027,920	-				+1.2
1,027,951	+				-0.6
1,027,954	+				+0.2
1,027,954	+				+0.3
1,027,954	+				-0.4
1,027,954	+				-0.9
1,027,954	+				-1.9
1,027,954	+				-1.8
1,027,955	-				+1.4
1,027,955	-				+0.1
1,027,955	-				-0.4
1,027,955	-				+0.7
1,027,955	-				+0.5
1,027,955	-				-0.5
1,027,955	-				-0.3
1,027,956	+				-0.4
1,027,956	+				-1.3
1,027,956	+				+0.9
1,027,956	+				+1.1
1,027,956	+				+1.4
1,027,956	+				+0.1
1,027,956	+				+0.3
1,027,956	+				+1.1
1,027,956	+				+1.1
1,027,957	-				+1.9
1,027,957	-				-0.1
1,027,957	-				+1.3
1,027,957	-				-0.0
1,027,957	-				-0.3
1,027,957	-				+1.1
1,027,957	-				+0.6
1,027,957	-				-0.1
1,027,957	-				+0.6
1,027,957	-				+0.8
1,027,957	-				-0.5
1,027,957	-				+0.5
1,027,957	-				+0.0
1,027,957	-				+1.1
1,027,957	-				+0.0
1,027,957	-				+0.9
1,027,957	-				-0.3
1,028,010	+				-0.1
1,028,010	+				+2.3
1,028,011	-				-1.9
1,028,052	+				-0.1
1,028,052	+				+0.9
1,028,053	-				+1.5
1,028,053	-				-0.4
1,028,112	+		IAI47_04910	0.17	-0.5
1,028,133	+		IAI47_04910	0.19	-1.4
1,028,133	+		IAI47_04910	0.19	+1.5
1,028,134	-		IAI47_04910	0.19	-0.3
1,028,134	-		IAI47_04910	0.19	+1.5
1,028,134	-		IAI47_04910	0.19	+1.5
1,028,134	-		IAI47_04910	0.19	-0.5
1,028,134	-		IAI47_04910	0.19	+1.9
1,028,135	+		IAI47_04910	0.19	+1.6
1,028,135	+		IAI47_04910	0.19	+0.4
1,028,136	-		IAI47_04910	0.20	-1.7
1,028,136	-		IAI47_04910	0.20	+1.2
1,028,136	-		IAI47_04910	0.20	-0.1
1,028,136	-		IAI47_04910	0.20	+0.6
1,028,136	-		IAI47_04910	0.20	+3.4
1,028,166	+		IAI47_04910	0.23	+0.3
1,028,167	-		IAI47_04910	0.23	+0.9
1,028,167	-		IAI47_04910	0.23	-0.3
1,028,258	+		IAI47_04910	0.34	+0.6
1,028,258	+		IAI47_04910	0.34	-1.5
1,028,258	+		IAI47_04910	0.34	+1.0
1,028,258	+		IAI47_04910	0.34	-1.4
1,028,258	+		IAI47_04910	0.34	+3.2