Strain Fitness in Pantoea sp. MT58 around IAI47_02405

Experiment: nitrogen source nitrite 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02395 and IAI47_02400 overlap by 11 nucleotidesIAI47_02400 and IAI47_02405 are separated by 71 nucleotidesIAI47_02405 and IAI47_02410 are separated by 11 nucleotidesIAI47_02410 and IAI47_02415 are separated by 25 nucleotides IAI47_02395: IAI47_02395 - sodium/pantothenate symporter, at 493,384 to 494,829 _02395 IAI47_02400: IAI47_02400 - YhdT family protein, at 494,819 to 495,061 _02400 IAI47_02405: IAI47_02405 - acetyl-CoA carboxylase biotin carboxylase subunit, at 495,133 to 496,482 _02405 IAI47_02410: IAI47_02410 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 496,494 to 496,955 _02410 IAI47_02415: IAI47_02415 - type II 3-dehydroquinate dehydratase, at 496,981 to 497,433 _02415 Position (kb) 495 496 497Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 494.315 kb on + strand, within IAI47_02395at 494.315 kb on + strand, within IAI47_02395at 494.316 kb on - strand, within IAI47_02395at 494.316 kb on - strand, within IAI47_02395at 494.326 kb on - strand, within IAI47_02395at 494.357 kb on + strand, within IAI47_02395at 494.357 kb on + strand, within IAI47_02395at 494.358 kb on - strand, within IAI47_02395at 494.358 kb on - strand, within IAI47_02395at 494.358 kb on - strand, within IAI47_02395at 494.358 kb on - strand, within IAI47_02395at 494.364 kb on + strand, within IAI47_02395at 494.401 kb on - strand, within IAI47_02395at 494.477 kb on + strand, within IAI47_02395at 494.486 kb on + strand, within IAI47_02395at 494.487 kb on - strand, within IAI47_02395at 494.514 kb on + strand, within IAI47_02395at 494.514 kb on + strand, within IAI47_02395at 494.514 kb on + strand, within IAI47_02395at 494.514 kb on + strand, within IAI47_02395at 494.514 kb on + strand, within IAI47_02395at 494.515 kb on - strand, within IAI47_02395at 494.515 kb on - strand, within IAI47_02395at 494.515 kb on - strand, within IAI47_02395at 494.515 kb on - strand, within IAI47_02395at 494.515 kb on - strand, within IAI47_02395at 494.520 kb on + strand, within IAI47_02395at 494.520 kb on + strand, within IAI47_02395at 494.520 kb on + strand, within IAI47_02395at 494.521 kb on - strand, within IAI47_02395at 494.521 kb on - strand, within IAI47_02395at 494.521 kb on - strand, within IAI47_02395at 494.521 kb on - strand, within IAI47_02395at 494.558 kb on - strand, within IAI47_02395at 494.558 kb on - strand, within IAI47_02395at 494.558 kb on - strand, within IAI47_02395at 494.584 kb on + strand, within IAI47_02395at 494.584 kb on + strand, within IAI47_02395at 494.584 kb on + strand, within IAI47_02395at 494.584 kb on + strand, within IAI47_02395at 494.584 kb on + strand, within IAI47_02395at 494.585 kb on - strand, within IAI47_02395at 494.585 kb on - strand, within IAI47_02395at 494.585 kb on - strand, within IAI47_02395at 494.599 kb on + strand, within IAI47_02395at 494.599 kb on + strand, within IAI47_02395at 494.599 kb on + strand, within IAI47_02395at 494.599 kb on + strand, within IAI47_02395at 494.599 kb on + strand, within IAI47_02395at 494.599 kb on + strand, within IAI47_02395at 494.599 kb on + strand, within IAI47_02395at 494.615 kb on + strand, within IAI47_02395at 494.615 kb on + strand, within IAI47_02395at 494.615 kb on + strand, within IAI47_02395at 494.615 kb on + strand, within IAI47_02395at 494.615 kb on + strand, within IAI47_02395at 494.616 kb on - strand, within IAI47_02395at 494.616 kb on - strand, within IAI47_02395at 494.616 kb on - strand, within IAI47_02395at 494.616 kb on - strand, within IAI47_02395at 494.616 kb on - strand, within IAI47_02395at 494.619 kb on + strand, within IAI47_02395at 494.619 kb on + strand, within IAI47_02395at 494.619 kb on + strand, within IAI47_02395at 494.620 kb on - strand, within IAI47_02395at 494.620 kb on - strand, within IAI47_02395at 494.620 kb on - strand, within IAI47_02395at 494.620 kb on - strand, within IAI47_02395at 494.620 kb on - strand, within IAI47_02395at 494.620 kb on - strand, within IAI47_02395at 494.620 kb on - strand, within IAI47_02395at 494.622 kb on - strand, within IAI47_02395at 494.622 kb on - strand, within IAI47_02395at 494.661 kb on + strand, within IAI47_02395at 494.661 kb on + strand, within IAI47_02395at 494.662 kb on - strand, within IAI47_02395at 494.662 kb on - strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.663 kb on + strand, within IAI47_02395at 494.664 kb on - strand, within IAI47_02395at 494.664 kb on - strand, within IAI47_02395at 494.664 kb on - strand, within IAI47_02395at 494.664 kb on - strand, within IAI47_02395at 494.664 kb on - strand, within IAI47_02395at 494.664 kb on - strand, within IAI47_02395at 494.664 kb on - strand, within IAI47_02395at 494.670 kb on + strand, within IAI47_02395at 494.670 kb on + strand, within IAI47_02395at 494.670 kb on + strand, within IAI47_02395at 494.670 kb on + strand, within IAI47_02395at 494.670 kb on + strand, within IAI47_02395at 494.670 kb on + strand, within IAI47_02395at 494.670 kb on + strand, within IAI47_02395at 494.671 kb on - strand, within IAI47_02395at 494.671 kb on - strand, within IAI47_02395at 494.671 kb on - strand, within IAI47_02395at 494.671 kb on - strand, within IAI47_02395at 494.671 kb on - strand, within IAI47_02395at 494.671 kb on - strand, within IAI47_02395at 494.673 kb on + strand, within IAI47_02395at 494.673 kb on + strand, within IAI47_02395at 494.673 kb on + strand, within IAI47_02395at 494.673 kb on + strand, within IAI47_02395at 494.674 kb on - strand, within IAI47_02395at 494.674 kb on - strand, within IAI47_02395at 494.674 kb on - strand, within IAI47_02395at 494.674 kb on - strand, within IAI47_02395at 494.723 kb on + strandat 494.723 kb on + strandat 494.723 kb on + strandat 494.723 kb on + strandat 494.724 kb on - strandat 494.724 kb on - strandat 494.724 kb on - strandat 494.724 kb on - strandat 494.754 kb on + strandat 494.754 kb on + strandat 494.755 kb on - strandat 494.767 kb on + strandat 494.768 kb on - strandat 494.795 kb on + strandat 494.795 kb on + strandat 494.795 kb on + strandat 494.795 kb on + strandat 494.795 kb on + strandat 494.796 kb on - strandat 494.796 kb on - strandat 494.796 kb on - strandat 494.796 kb on - strandat 494.814 kb on + strandat 494.833 kb on + strandat 494.834 kb on - strandat 495.034 kb on + strand, within IAI47_02400at 495.035 kb on - strand, within IAI47_02400at 495.035 kb on - strand, within IAI47_02400at 495.044 kb on + strandat 495.044 kb on + strandat 495.045 kb on - strandat 495.045 kb on - strandat 495.045 kb on - strandat 495.045 kb on - strandat 495.046 kb on + strandat 495.046 kb on + strandat 495.047 kb on - strandat 495.047 kb on - strandat 495.047 kb on - strandat 495.072 kb on + strandat 495.073 kb on - strandat 495.103 kb on + strandat 495.118 kb on + strandat 495.134 kb on + strandat 495.135 kb on - strandat 497.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM
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494,315 + IAI47_02395 0.64 +0.9
494,315 + IAI47_02395 0.64 -0.0
494,316 - IAI47_02395 0.64 +2.0
494,316 - IAI47_02395 0.64 -1.5
494,326 - IAI47_02395 0.65 -0.1
494,357 + IAI47_02395 0.67 +1.5
494,357 + IAI47_02395 0.67 -0.1
494,358 - IAI47_02395 0.67 +0.8
494,358 - IAI47_02395 0.67 +1.9
494,358 - IAI47_02395 0.67 +0.2
494,358 - IAI47_02395 0.67 +2.8
494,364 + IAI47_02395 0.68 +1.3
494,401 - IAI47_02395 0.70 -0.9
494,477 + IAI47_02395 0.76 +0.8
494,486 + IAI47_02395 0.76 +0.5
494,487 - IAI47_02395 0.76 -1.7
494,514 + IAI47_02395 0.78 +0.6
494,514 + IAI47_02395 0.78 +1.7
494,514 + IAI47_02395 0.78 -1.0
494,514 + IAI47_02395 0.78 +1.1
494,514 + IAI47_02395 0.78 +2.1
494,515 - IAI47_02395 0.78 +0.1
494,515 - IAI47_02395 0.78 -0.2
494,515 - IAI47_02395 0.78 -1.5
494,515 - IAI47_02395 0.78 +0.1
494,515 - IAI47_02395 0.78 +2.0
494,520 + IAI47_02395 0.79 -2.1
494,520 + IAI47_02395 0.79 -0.3
494,520 + IAI47_02395 0.79 -2.5
494,521 - IAI47_02395 0.79 +2.3
494,521 - IAI47_02395 0.79 +0.9
494,521 - IAI47_02395 0.79 -0.2
494,521 - IAI47_02395 0.79 -1.0
494,558 - IAI47_02395 0.81 -0.1
494,558 - IAI47_02395 0.81 -0.7
494,558 - IAI47_02395 0.81 +2.7
494,584 + IAI47_02395 0.83 +2.3
494,584 + IAI47_02395 0.83 +1.7
494,584 + IAI47_02395 0.83 +1.4
494,584 + IAI47_02395 0.83 +2.2
494,584 + IAI47_02395 0.83 +0.3
494,585 - IAI47_02395 0.83 -0.5
494,585 - IAI47_02395 0.83 +0.1
494,585 - IAI47_02395 0.83 +0.2
494,599 + IAI47_02395 0.84 +0.1
494,599 + IAI47_02395 0.84 -0.1
494,599 + IAI47_02395 0.84 +0.3
494,599 + IAI47_02395 0.84 +0.9
494,599 + IAI47_02395 0.84 +0.9
494,599 + IAI47_02395 0.84 -0.1
494,599 + IAI47_02395 0.84 -1.0
494,615 + IAI47_02395 0.85 -0.8
494,615 + IAI47_02395 0.85 +0.7
494,615 + IAI47_02395 0.85 +0.8
494,615 + IAI47_02395 0.85 -0.5
494,615 + IAI47_02395 0.85 -0.6
494,616 - IAI47_02395 0.85 +0.5
494,616 - IAI47_02395 0.85 -0.3
494,616 - IAI47_02395 0.85 +2.6
494,616 - IAI47_02395 0.85 +1.5
494,616 - IAI47_02395 0.85 +0.4
494,619 + IAI47_02395 0.85 +2.0
494,619 + IAI47_02395 0.85 +1.8
494,619 + IAI47_02395 0.85 -1.3
494,620 - IAI47_02395 0.85 +0.0
494,620 - IAI47_02395 0.85 -1.4
494,620 - IAI47_02395 0.85 -2.1
494,620 - IAI47_02395 0.85 -0.3
494,620 - IAI47_02395 0.85 -2.0
494,620 - IAI47_02395 0.85 -0.1
494,620 - IAI47_02395 0.85 +2.8
494,622 - IAI47_02395 0.86 +1.1
494,622 - IAI47_02395 0.86 +0.2
494,661 + IAI47_02395 0.88 +0.8
494,661 + IAI47_02395 0.88 +1.5
494,662 - IAI47_02395 0.88 +0.3
494,662 - IAI47_02395 0.88 +0.4
494,663 + IAI47_02395 0.88 +0.5
494,663 + IAI47_02395 0.88 -0.3
494,663 + IAI47_02395 0.88 +2.0
494,663 + IAI47_02395 0.88 -0.4
494,663 + IAI47_02395 0.88 +1.5
494,663 + IAI47_02395 0.88 -2.8
494,663 + IAI47_02395 0.88 +1.8
494,663 + IAI47_02395 0.88 -0.1
494,663 + IAI47_02395 0.88 -1.8
494,663 + IAI47_02395 0.88 +0.2
494,663 + IAI47_02395 0.88 +0.8
494,663 + IAI47_02395 0.88 -0.7
494,663 + IAI47_02395 0.88 +1.2
494,663 + IAI47_02395 0.88 +0.0
494,663 + IAI47_02395 0.88 -0.5
494,663 + IAI47_02395 0.88 +0.3
494,663 + IAI47_02395 0.88 +2.0
494,663 + IAI47_02395 0.88 +1.9
494,664 - IAI47_02395 0.89 +0.2
494,664 - IAI47_02395 0.89 +1.6
494,664 - IAI47_02395 0.89 +0.7
494,664 - IAI47_02395 0.89 +1.3
494,664 - IAI47_02395 0.89 +3.2
494,664 - IAI47_02395 0.89 +1.7
494,664 - IAI47_02395 0.89 +1.1
494,670 + IAI47_02395 0.89 +1.5
494,670 + IAI47_02395 0.89 -0.9
494,670 + IAI47_02395 0.89 -1.0
494,670 + IAI47_02395 0.89 +2.2
494,670 + IAI47_02395 0.89 +0.9
494,670 + IAI47_02395 0.89 -0.4
494,670 + IAI47_02395 0.89 -1.0
494,671 - IAI47_02395 0.89 +1.3
494,671 - IAI47_02395 0.89 -0.3
494,671 - IAI47_02395 0.89 +0.7
494,671 - IAI47_02395 0.89 +1.3
494,671 - IAI47_02395 0.89 +0.7
494,671 - IAI47_02395 0.89 +1.6
494,673 + IAI47_02395 0.89 -0.5
494,673 + IAI47_02395 0.89 -0.4
494,673 + IAI47_02395 0.89 -1.0
494,673 + IAI47_02395 0.89 -2.6
494,674 - IAI47_02395 0.89 +1.8
494,674 - IAI47_02395 0.89 +1.3
494,674 - IAI47_02395 0.89 +1.6
494,674 - IAI47_02395 0.89 +1.1
494,723 + -1.4
494,723 + +0.0
494,723 + +0.6
494,723 + -0.1
494,724 - +1.0
494,724 - +1.6
494,724 - +1.0
494,724 - +0.7
494,754 + +1.2
494,754 + +1.5
494,755 - +1.2
494,767 + -1.5
494,768 - +0.6
494,795 + +2.0
494,795 + -0.3
494,795 + -1.2
494,795 + +1.9
494,795 + +0.6
494,796 - +1.5
494,796 - +1.5
494,796 - -0.6
494,796 - -0.1
494,814 + +0.6
494,833 + +0.3
494,834 - -2.9
495,034 + IAI47_02400 0.88 +2.5
495,035 - IAI47_02400 0.89 +0.8
495,035 - IAI47_02400 0.89 +0.0
495,044 + -1.5
495,044 + -0.2
495,045 - -1.1
495,045 - +0.5
495,045 - +2.2
495,045 - +1.2
495,046 + +1.2
495,046 + +1.6
495,047 - +0.2
495,047 - +0.3
495,047 - +0.2
495,072 + +0.4
495,073 - +1.1
495,103 + +1.5
495,118 + -2.1
495,134 + +1.5
495,135 - -2.0
497,476 - +0.9

Or see this region's nucleotide sequence