Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01885 and IAI47_01890 are separated by 363 nucleotides IAI47_01890 and IAI47_01895 are separated by 38 nucleotides IAI47_01895 and IAI47_01900 are separated by 72 nucleotides
IAI47_01885: IAI47_01885 - DNA uptake porin HofQ, at 413,114 to 414,385
_01885
IAI47_01890: IAI47_01890 - shikimate kinase AroK, at 414,749 to 415,270
_01890
IAI47_01895: IAI47_01895 - 3-dehydroquinate synthase, at 415,309 to 416,397
_01895
IAI47_01900: IAI47_01900 - SPOR domain-containing protein, at 416,470 to 417,516
_01900
Position (kb) 415
416
417 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 414.374 kb on - strand at 414.374 kb on - strand at 414.383 kb on + strand at 414.405 kb on - strand at 414.405 kb on - strand at 414.405 kb on - strand at 414.436 kb on + strand at 414.436 kb on + strand at 414.436 kb on + strand at 414.436 kb on + strand at 414.437 kb on - strand at 414.437 kb on - strand at 414.437 kb on - strand at 414.437 kb on - strand at 414.437 kb on - strand at 414.437 kb on - strand at 414.437 kb on - strand at 414.441 kb on + strand at 414.441 kb on + strand at 414.441 kb on + strand at 414.441 kb on + strand at 414.441 kb on + strand at 414.441 kb on + strand at 414.441 kb on + strand at 414.442 kb on - strand at 414.442 kb on - strand at 414.442 kb on - strand at 414.442 kb on - strand at 414.471 kb on - strand at 414.471 kb on - strand at 414.478 kb on + strand at 414.478 kb on + strand at 414.478 kb on + strand at 414.479 kb on - strand at 414.479 kb on - strand at 414.479 kb on - strand at 414.488 kb on - strand at 414.521 kb on + strand at 414.521 kb on + strand at 414.522 kb on - strand at 414.533 kb on + strand at 414.534 kb on - strand at 414.534 kb on - strand at 414.534 kb on - strand at 414.556 kb on + strand at 414.556 kb on + strand at 414.557 kb on - strand at 414.557 kb on - strand at 414.606 kb on + strand at 414.606 kb on + strand at 414.607 kb on - strand at 414.608 kb on + strand at 414.609 kb on - strand at 414.641 kb on + strand at 414.716 kb on + strand at 415.291 kb on + strand at 416.401 kb on + strand at 416.401 kb on + strand at 416.401 kb on + strand at 416.455 kb on + strand at 417.177 kb on + strand, within IAI47_01900 at 417.268 kb on + strand, within IAI47_01900 at 417.268 kb on + strand, within IAI47_01900 at 417.268 kb on + strand, within IAI47_01900 at 417.268 kb on + strand, within IAI47_01900 at 417.268 kb on + strand, within IAI47_01900 at 417.268 kb on + strand, within IAI47_01900 at 417.270 kb on + strand, within IAI47_01900 at 417.270 kb on + strand, within IAI47_01900 at 417.270 kb on + strand, within IAI47_01900 at 417.270 kb on + strand, within IAI47_01900 at 417.270 kb on + strand, within IAI47_01900 at 417.366 kb on + strand, within IAI47_01900 at 417.382 kb on + strand, within IAI47_01900 at 417.382 kb on + strand, within IAI47_01900 at 417.382 kb on + strand, within IAI47_01900 at 417.382 kb on + strand, within IAI47_01900
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 414,374 - -1.2 414,374 - -0.3 414,383 + -0.7 414,405 - +1.6 414,405 - -1.4 414,405 - +0.6 414,436 + +1.3 414,436 + -2.3 414,436 + +2.0 414,436 + -1.2 414,437 - -0.0 414,437 - +0.4 414,437 - -0.1 414,437 - +2.0 414,437 - +1.4 414,437 - +0.5 414,437 - +0.3 414,441 + +1.2 414,441 + -1.2 414,441 + -2.0 414,441 + -0.9 414,441 + +0.4 414,441 + -1.3 414,441 + -3.2 414,442 - +0.2 414,442 - +1.0 414,442 - +2.4 414,442 - +2.3 414,471 - -0.4 414,471 - -2.7 414,478 + +0.3 414,478 + -0.4 414,478 + -2.6 414,479 - +1.7 414,479 - +0.4 414,479 - +0.8 414,488 - -2.3 414,521 + +1.6 414,521 + +0.2 414,522 - -1.5 414,533 + +0.6 414,534 - +0.3 414,534 - -1.0 414,534 - +0.3 414,556 + +0.6 414,556 + +1.7 414,557 - +1.0 414,557 - +2.2 414,606 + +2.9 414,606 + +0.1 414,607 - -1.2 414,608 + -1.9 414,609 - -0.6 414,641 + -1.5 414,716 + +0.3 415,291 + +0.3 416,401 + +0.6 416,401 + -0.1 416,401 + -0.7 416,455 + +1.9 417,177 + IAI47_01900 0.68 -0.6 417,268 + IAI47_01900 0.76 +0.0 417,268 + IAI47_01900 0.76 -0.6 417,268 + IAI47_01900 0.76 +0.8 417,268 + IAI47_01900 0.76 -1.7 417,268 + IAI47_01900 0.76 +1.1 417,268 + IAI47_01900 0.76 -0.7 417,270 + IAI47_01900 0.76 +0.9 417,270 + IAI47_01900 0.76 -0.2 417,270 + IAI47_01900 0.76 -0.4 417,270 + IAI47_01900 0.76 -0.5 417,270 + IAI47_01900 0.76 +1.6 417,366 + IAI47_01900 0.86 -1.9 417,382 + IAI47_01900 0.87 +0.5 417,382 + IAI47_01900 0.87 +1.3 417,382 + IAI47_01900 0.87 +0.3 417,382 + IAI47_01900 0.87 +1.6
Or see this region's nucleotide sequence