Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4240

Experiment: Gentamicin 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4239 and Ga0059261_4240 are separated by 18 nucleotidesGa0059261_4240 and Ga0059261_4241 overlap by 4 nucleotidesGa0059261_4241 and Ga0059261_4242 are separated by 11 nucleotides Ga0059261_4239: Ga0059261_4239 - DNA primase, catalytic core, at 4,390,025 to 4,391,878 _4239 Ga0059261_4240: Ga0059261_4240 - hypothetical protein, at 4,391,897 to 4,392,610 _4240 Ga0059261_4241: Ga0059261_4241 - hypothetical protein, at 4,392,607 to 4,393,083 _4241 Ga0059261_4242: Ga0059261_4242 - Uncharacterized conserved protein, at 4,393,095 to 4,393,547 _4242 Position (kb) 4391 4392 4393Strain fitness (log2 ratio) -1 0 1at 4392.196 kb on - strand, within Ga0059261_4240at 4392.196 kb on - strand, within Ga0059261_4240at 4392.196 kb on - strand, within Ga0059261_4240at 4392.196 kb on - strand, within Ga0059261_4240at 4392.196 kb on - strand, within Ga0059261_4240at 4392.196 kb on - strand, within Ga0059261_4240at 4392.196 kb on - strand, within Ga0059261_4240at 4392.196 kb on - strand, within Ga0059261_4240at 4392.196 kb on - strand, within Ga0059261_4240at 4392.196 kb on - strand, within Ga0059261_4240at 4392.196 kb on - strand, within Ga0059261_4240at 4392.196 kb on - strand, within Ga0059261_4240at 4392.196 kb on - strand, within Ga0059261_4240

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.015 mg/ml
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4,392,196 - Ga0059261_4240 0.42 +0.8
4,392,196 - Ga0059261_4240 0.42 +1.3
4,392,196 - Ga0059261_4240 0.42 +0.6
4,392,196 - Ga0059261_4240 0.42 -0.1
4,392,196 - Ga0059261_4240 0.42 -0.5
4,392,196 - Ga0059261_4240 0.42 +0.2
4,392,196 - Ga0059261_4240 0.42 +0.1
4,392,196 - Ga0059261_4240 0.42 +0.4
4,392,196 - Ga0059261_4240 0.42 +0.2
4,392,196 - Ga0059261_4240 0.42 -0.3
4,392,196 - Ga0059261_4240 0.42 +1.0
4,392,196 - Ga0059261_4240 0.42 +0.4
4,392,196 - Ga0059261_4240 0.42 -0.0

Or see this region's nucleotide sequence