Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3860

Experiment: Gentamicin 0.015 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.015 mg/ml
3,964,110	+		Ga0059261_3858	0.81	+0.2
3,964,111	-		Ga0059261_3858	0.81	+0.4
3,964,291	+		Ga0059261_3858	0.88	-0.3
3,964,291	+		Ga0059261_3858	0.88	-0.1
3,964,292	-		Ga0059261_3858	0.89	-0.1
3,964,307	+		Ga0059261_3858	0.89	+0.9
3,964,307	+		Ga0059261_3858	0.89	-0.0
3,964,308	-		Ga0059261_3858	0.89	-0.0
3,964,328	-		Ga0059261_3858	0.90	-0.5
3,964,328	-		Ga0059261_3858	0.90	+0.4
3,964,545	-				-0.4
3,964,552	+				-0.9
3,964,552	+				-0.6
3,964,552	+				-0.3
3,964,552	+				+1.3
3,964,553	-				+0.4
3,964,553	-				+0.4
3,964,553	-				-0.3
3,964,553	-				-0.1
3,964,553	-				+0.2
3,964,556	+				-0.3
3,964,556	+				-0.0
3,964,556	+				+0.1
3,964,557	-				-0.2
3,964,557	-				+0.3
3,964,557	-				-0.3
3,964,557	-				-2.3
3,964,557	-				+0.3
3,964,837	+		Ga0059261_3859	0.55	-0.9
3,964,838	-		Ga0059261_3859	0.55	+1.1
3,964,838	-		Ga0059261_3859	0.55	-0.6
3,964,838	-		Ga0059261_3859	0.55	-1.3
3,964,908	-		Ga0059261_3859	0.69	+0.6
3,965,035	+				+0.2
3,965,035	+				+0.5
3,965,036	-				+0.8
3,965,036	-				-0.5
3,965,045	+				-0.1
3,965,045	+				+0.4
3,965,046	-				-0.1
3,965,046	-				+0.2
3,965,115	+				-0.3
3,965,116	-				+0.8
3,965,294	+		Ga0059261_3860	0.27	+0.1
3,965,294	+		Ga0059261_3860	0.27	+0.7
3,965,294	+		Ga0059261_3860	0.27	-0.3
3,965,294	+		Ga0059261_3860	0.27	-0.1
3,965,295	-		Ga0059261_3860	0.28	+0.4
3,965,295	-		Ga0059261_3860	0.28	+2.9
3,965,295	-		Ga0059261_3860	0.28	-0.2
3,965,295	-		Ga0059261_3860	0.28	+1.0
3,965,405	+		Ga0059261_3860	0.40	+0.1
3,965,405	+		Ga0059261_3860	0.40	+0.6
3,965,406	-		Ga0059261_3860	0.40	+0.7
3,965,406	-		Ga0059261_3860	0.40	-0.2
3,965,406	-		Ga0059261_3860	0.40	+0.6
3,965,436	-				+0.7
3,965,564	+		Ga0059261_3860	0.58	+0.1
3,965,564	+		Ga0059261_3860	0.58	-0.3
3,965,565	-		Ga0059261_3860	0.58	+1.4
3,965,565	-		Ga0059261_3860	0.58	+0.7
3,965,565	-		Ga0059261_3860	0.58	+1.1
3,965,565	-		Ga0059261_3860	0.58	+0.3
3,965,565	-		Ga0059261_3860	0.58	-0.0
3,965,603	+		Ga0059261_3860	0.62	+0.0
3,965,603	+		Ga0059261_3860	0.62	-0.5
3,965,603	+		Ga0059261_3860	0.62	+0.3
3,965,618	+		Ga0059261_3860	0.64	+0.8
3,965,618	+		Ga0059261_3860	0.64	-1.6
3,965,618	+		Ga0059261_3860	0.64	+0.5
3,965,618	+		Ga0059261_3860	0.64	-0.1
3,965,618	+		Ga0059261_3860	0.64	+0.6
3,965,618	+				+2.7
3,965,618	+		Ga0059261_3860	0.64	-0.1
3,965,619	-		Ga0059261_3860	0.64	-0.0
3,965,619	-		Ga0059261_3860	0.64	-0.1
3,965,720	+		Ga0059261_3860	0.75	+0.5
3,965,720	+		Ga0059261_3860	0.75	+0.0
3,965,720	+				-1.6
3,965,720	+		Ga0059261_3860	0.75	-0.3
3,965,721	-		Ga0059261_3860	0.76	+0.3
3,965,721	-		Ga0059261_3860	0.76	+0.9
3,965,721	-		Ga0059261_3860	0.76	+0.6
3,965,721	-		Ga0059261_3860	0.76	-0.4
3,965,721	-		Ga0059261_3860	0.76	+0.2
3,965,721	-		Ga0059261_3860	0.76	+0.0
3,965,721	-		Ga0059261_3860	0.76	-0.3
3,965,721	-		Ga0059261_3860	0.76	-0.5
3,965,741	+		Ga0059261_3860	0.78	+0.1
3,965,742	-		Ga0059261_3860	0.78	-0.3
3,965,749	+		Ga0059261_3860	0.79	+0.1
3,965,749	+		Ga0059261_3860	0.79	+0.5
3,965,750	-		Ga0059261_3860	0.79	+1.5
3,965,870	+				-0.9
3,965,871	-				+0.3
3,965,921	+				+0.3
3,965,921	+				-0.3
3,965,922	-				+0.7
3,965,922	-				-0.3
3,965,922	-				-0.4
3,966,173	+				+0.7
3,966,173	+				-0.3
3,966,173	+				+1.0
3,966,173	+				-0.3
3,966,174	-				+0.5
3,966,216	+				+0.7
3,966,216	+				+0.3
3,966,216	+				+0.1
3,966,216	+				+0.5
3,966,217	-				-1.6
3,966,217	-				+0.4
3,966,217	-				+0.2
3,966,217	-				+1.7
3,966,220	+				+0.6
3,966,220	+				-0.7
3,966,220	+				+0.4
3,966,221	-				+0.5
3,966,221	-				+0.6
3,966,221	-				+0.5
3,966,221	-				+0.7
3,966,442	+		Ga0059261_3861	0.17	-0.9
3,966,443	-		Ga0059261_3861	0.17	+0.4
3,966,457	+		Ga0059261_3861	0.18	-0.4
3,966,458	-		Ga0059261_3861	0.18	-0.5
3,966,458	-		Ga0059261_3861	0.18	-0.4
3,966,574	+		Ga0059261_3861	0.27	-0.0
3,966,574	+		Ga0059261_3861	0.27	+0.3
3,966,575	-		Ga0059261_3861	0.27	+0.1
3,966,726	-		Ga0059261_3861	0.38	-0.8
3,966,854	-		Ga0059261_3861	0.47	+0.3
3,966,854	-		Ga0059261_3861	0.47	-0.1
3,966,875	+		Ga0059261_3861	0.49	+0.1
3,966,876	-		Ga0059261_3861	0.49	-0.1