Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0880

Experiment: Gentamicin 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0878 and Ga0059261_0879 overlap by 4 nucleotidesGa0059261_0879 and Ga0059261_0880 are separated by 47 nucleotidesGa0059261_0880 and Ga0059261_0881 are separated by 32 nucleotides Ga0059261_0878: Ga0059261_0878 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 919,432 to 920,436 _0878 Ga0059261_0879: Ga0059261_0879 - ribosomal RNA small subunit methyltransferase A, at 920,433 to 921,251 _0879 Ga0059261_0880: Ga0059261_0880 - Tetratricopeptide repeat, at 921,299 to 921,805 _0880 Ga0059261_0881: Ga0059261_0881 - tRNA and rRNA cytosine-C5-methylases, at 921,838 to 923,022 _0881 Position (kb) 921 922Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 920.575 kb on + strand, within Ga0059261_0879at 920.575 kb on + strand, within Ga0059261_0879at 920.575 kb on + strand, within Ga0059261_0879at 920.576 kb on - strand, within Ga0059261_0879at 920.774 kb on + strand, within Ga0059261_0879at 920.774 kb on + strand, within Ga0059261_0879at 920.793 kb on + strand, within Ga0059261_0879at 920.793 kb on + strand, within Ga0059261_0879at 920.793 kb on + strand, within Ga0059261_0879at 920.793 kb on + strand, within Ga0059261_0879at 920.794 kb on - strand, within Ga0059261_0879at 920.794 kb on - strandat 920.794 kb on - strand, within Ga0059261_0879at 920.794 kb on - strand, within Ga0059261_0879at 920.794 kb on - strand, within Ga0059261_0879at 920.795 kb on + strand, within Ga0059261_0879at 920.795 kb on + strand, within Ga0059261_0879at 920.795 kb on + strandat 920.795 kb on + strand, within Ga0059261_0879at 920.795 kb on + strand, within Ga0059261_0879at 920.795 kb on + strand, within Ga0059261_0879at 920.795 kb on + strand, within Ga0059261_0879at 920.795 kb on + strand, within Ga0059261_0879at 920.795 kb on + strand, within Ga0059261_0879at 920.795 kb on + strand, within Ga0059261_0879at 920.795 kb on + strand, within Ga0059261_0879at 920.796 kb on - strand, within Ga0059261_0879at 920.796 kb on - strand, within Ga0059261_0879at 920.796 kb on - strand, within Ga0059261_0879at 920.796 kb on - strand, within Ga0059261_0879at 920.796 kb on - strandat 920.796 kb on - strand, within Ga0059261_0879at 920.796 kb on - strand, within Ga0059261_0879at 920.799 kb on - strand, within Ga0059261_0879at 920.922 kb on + strandat 920.923 kb on - strand, within Ga0059261_0879at 921.032 kb on + strand, within Ga0059261_0879at 921.032 kb on + strand, within Ga0059261_0879at 921.032 kb on + strand, within Ga0059261_0879at 921.032 kb on + strand, within Ga0059261_0879at 921.033 kb on - strand, within Ga0059261_0879at 921.033 kb on - strand, within Ga0059261_0879at 921.033 kb on - strand, within Ga0059261_0879at 921.033 kb on - strand, within Ga0059261_0879at 921.205 kb on + strandat 921.249 kb on + strandat 921.249 kb on + strandat 921.250 kb on - strandat 921.250 kb on - strandat 921.250 kb on - strandat 921.269 kb on - strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.301 kb on - strandat 921.301 kb on - strandat 921.301 kb on - strandat 921.301 kb on - strandat 921.534 kb on + strand, within Ga0059261_0880at 921.534 kb on + strand, within Ga0059261_0880at 921.534 kb on + strand, within Ga0059261_0880at 921.535 kb on - strand, within Ga0059261_0880at 921.535 kb on - strand, within Ga0059261_0880at 921.535 kb on - strand, within Ga0059261_0880at 921.535 kb on - strand, within Ga0059261_0880at 921.593 kb on - strand, within Ga0059261_0880at 921.593 kb on - strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.595 kb on - strand, within Ga0059261_0880at 921.595 kb on - strandat 921.595 kb on - strand, within Ga0059261_0880at 921.595 kb on - strand, within Ga0059261_0880at 921.799 kb on + strandat 921.799 kb on + strandat 921.799 kb on + strandat 921.800 kb on - strandat 921.800 kb on - strandat 921.800 kb on - strandat 921.800 kb on - strandat 921.821 kb on + strandat 921.821 kb on + strandat 921.822 kb on - strandat 921.822 kb on - strandat 921.822 kb on - strandat 921.836 kb on + strandat 921.836 kb on + strandat 921.836 kb on + strandat 921.836 kb on + strandat 921.837 kb on - strandat 921.837 kb on - strandat 921.837 kb on - strandat 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.484 kb on + strand, within Ga0059261_0881at 922.484 kb on + strand, within Ga0059261_0881at 922.485 kb on - strand, within Ga0059261_0881at 922.485 kb on - strand, within Ga0059261_0881at 922.485 kb on - strand, within Ga0059261_0881at 922.752 kb on - strandat 922.752 kb on - strand, within Ga0059261_0881

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.015 mg/ml
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920,575 + Ga0059261_0879 0.17 -2.8
920,575 + Ga0059261_0879 0.17 -1.2
920,575 + Ga0059261_0879 0.17 -0.4
920,576 - Ga0059261_0879 0.17 -0.1
920,774 + Ga0059261_0879 0.42 -1.7
920,774 + Ga0059261_0879 0.42 -1.4
920,793 + Ga0059261_0879 0.44 -2.0
920,793 + Ga0059261_0879 0.44 -1.4
920,793 + Ga0059261_0879 0.44 -0.8
920,793 + Ga0059261_0879 0.44 -0.6
920,794 - Ga0059261_0879 0.44 -0.8
920,794 - +0.8
920,794 - Ga0059261_0879 0.44 -1.3
920,794 - Ga0059261_0879 0.44 -0.2
920,794 - Ga0059261_0879 0.44 -0.8
920,795 + Ga0059261_0879 0.44 -0.5
920,795 + Ga0059261_0879 0.44 -3.3
920,795 + -0.8
920,795 + Ga0059261_0879 0.44 -1.2
920,795 + Ga0059261_0879 0.44 -1.6
920,795 + Ga0059261_0879 0.44 -1.1
920,795 + Ga0059261_0879 0.44 -1.8
920,795 + Ga0059261_0879 0.44 -1.6
920,795 + Ga0059261_0879 0.44 +0.3
920,795 + Ga0059261_0879 0.44 -1.1
920,795 + Ga0059261_0879 0.44 -0.6
920,796 - Ga0059261_0879 0.44 -0.8
920,796 - Ga0059261_0879 0.44 -0.8
920,796 - Ga0059261_0879 0.44 -1.5
920,796 - Ga0059261_0879 0.44 -0.2
920,796 - +1.8
920,796 - Ga0059261_0879 0.44 -0.3
920,796 - Ga0059261_0879 0.44 -1.1
920,799 - Ga0059261_0879 0.45 -1.4
920,922 + -1.2
920,923 - Ga0059261_0879 0.60 +1.2
921,032 + Ga0059261_0879 0.73 -2.5
921,032 + Ga0059261_0879 0.73 -0.8
921,032 + Ga0059261_0879 0.73 -1.8
921,032 + Ga0059261_0879 0.73 -1.6
921,033 - Ga0059261_0879 0.73 -1.0
921,033 - Ga0059261_0879 0.73 -0.6
921,033 - Ga0059261_0879 0.73 -1.7
921,033 - Ga0059261_0879 0.73 -1.7
921,205 + -0.5
921,249 + +0.3
921,249 + +0.4
921,250 - +1.0
921,250 - -0.4
921,250 - +0.8
921,269 - -0.1
921,300 + -0.4
921,300 + +0.2
921,300 + +0.0
921,300 + -0.1
921,300 + -0.0
921,300 + -0.2
921,300 + -0.2
921,300 + +0.4
921,300 + +0.1
921,300 + +0.1
921,301 - +1.2
921,301 - -0.3
921,301 - +0.1
921,301 - +0.8
921,534 + Ga0059261_0880 0.46 +0.6
921,534 + Ga0059261_0880 0.46 -0.4
921,534 + Ga0059261_0880 0.46 +0.2
921,535 - Ga0059261_0880 0.47 -0.1
921,535 - Ga0059261_0880 0.47 +0.5
921,535 - Ga0059261_0880 0.47 -0.8
921,535 - Ga0059261_0880 0.47 -0.2
921,593 - Ga0059261_0880 0.58 +0.5
921,593 - Ga0059261_0880 0.58 -0.9
921,594 + Ga0059261_0880 0.58 -0.5
921,594 + Ga0059261_0880 0.58 +0.2
921,594 + Ga0059261_0880 0.58 -0.1
921,594 + Ga0059261_0880 0.58 -0.1
921,594 + Ga0059261_0880 0.58 -0.4
921,594 + Ga0059261_0880 0.58 -1.0
921,594 + Ga0059261_0880 0.58 +0.2
921,594 + Ga0059261_0880 0.58 +0.0
921,594 + Ga0059261_0880 0.58 -0.0
921,595 - Ga0059261_0880 0.58 -0.1
921,595 - -0.8
921,595 - Ga0059261_0880 0.58 +0.4
921,595 - Ga0059261_0880 0.58 -0.4
921,799 + -0.4
921,799 + -0.3
921,799 + -0.4
921,800 - -0.6
921,800 - -0.3
921,800 - +0.0
921,800 - +0.2
921,821 + -0.2
921,821 + +0.8
921,822 - -0.0
921,822 - +0.3
921,822 - +0.5
921,836 + +0.1
921,836 + -0.2
921,836 + -0.6
921,836 + -2.0
921,837 - -0.2
921,837 - -0.7
921,837 - +0.8
922,018 + Ga0059261_0881 0.15 +0.5
922,018 + Ga0059261_0881 0.15 -0.6
922,018 + Ga0059261_0881 0.15 -0.4
922,018 + Ga0059261_0881 0.15 +0.2
922,018 + Ga0059261_0881 0.15 +0.3
922,018 + Ga0059261_0881 0.15 -0.2
922,018 + Ga0059261_0881 0.15 +0.2
922,018 + Ga0059261_0881 0.15 +0.3
922,018 + Ga0059261_0881 0.15 -0.3
922,018 + Ga0059261_0881 0.15 +0.2
922,018 + Ga0059261_0881 0.15 -0.6
922,018 + Ga0059261_0881 0.15 +1.3
922,019 - Ga0059261_0881 0.15 +0.4
922,019 - Ga0059261_0881 0.15 +0.2
922,019 - Ga0059261_0881 0.15 -1.0
922,019 - Ga0059261_0881 0.15 -0.0
922,019 - Ga0059261_0881 0.15 +1.0
922,019 - Ga0059261_0881 0.15 -0.2
922,019 - Ga0059261_0881 0.15 -0.2
922,019 - Ga0059261_0881 0.15 +0.0
922,484 + Ga0059261_0881 0.55 +0.1
922,484 + Ga0059261_0881 0.55 -0.0
922,485 - Ga0059261_0881 0.55 +0.1
922,485 - Ga0059261_0881 0.55 +0.5
922,485 - Ga0059261_0881 0.55 +0.8
922,752 - +0.8
922,752 - Ga0059261_0881 0.77 +0.1

Or see this region's nucleotide sequence