Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0807

Experiment: Gentamicin 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0806 and Ga0059261_0807 are separated by 58 nucleotidesGa0059261_0807 and Ga0059261_0808 are separated by 191 nucleotides Ga0059261_0806: Ga0059261_0806 - glutamate--cysteine ligase, plant type, at 847,728 to 849,110 _0806 Ga0059261_0807: Ga0059261_0807 - RNA methyltransferase, RsmE family, at 849,169 to 849,912 _0807 Ga0059261_0808: Ga0059261_0808 - Dolichyl-phosphate-mannose-protein mannosyltransferase, at 850,104 to 851,435 _0808 Position (kb) 849 850Strain fitness (log2 ratio) -2 -1 0 1 2 3at 849.113 kb on - strandat 849.113 kb on - strandat 849.167 kb on + strandat 849.168 kb on - strandat 849.170 kb on + strandat 849.170 kb on + strandat 849.170 kb on + strandat 849.171 kb on - strandat 849.171 kb on - strandat 849.504 kb on + strand, within Ga0059261_0807at 849.504 kb on + strand, within Ga0059261_0807at 849.504 kb on + strand, within Ga0059261_0807at 849.504 kb on + strand, within Ga0059261_0807at 849.505 kb on - strand, within Ga0059261_0807at 849.505 kb on - strand, within Ga0059261_0807at 849.505 kb on - strand, within Ga0059261_0807at 849.807 kb on - strand, within Ga0059261_0807at 849.945 kb on - strandat 849.945 kb on - strandat 849.973 kb on + strandat 849.973 kb on + strandat 849.973 kb on + strandat 849.973 kb on + strandat 849.973 kb on + strandat 849.974 kb on - strandat 849.974 kb on - strandat 849.974 kb on - strandat 849.974 kb on - strandat 849.974 kb on - strandat 849.974 kb on - strandat 849.974 kb on - strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.999 kb on - strandat 849.999 kb on - strandat 849.999 kb on - strandat 850.030 kb on + strandat 850.030 kb on + strandat 850.031 kb on - strandat 850.031 kb on - strandat 850.031 kb on - strandat 850.063 kb on + strandat 850.063 kb on + strandat 850.063 kb on + strandat 850.064 kb on - strandat 850.064 kb on - strandat 850.064 kb on - strandat 850.068 kb on + strandat 850.068 kb on + strandat 850.069 kb on - strandat 850.069 kb on - strandat 850.246 kb on + strand, within Ga0059261_0808at 850.247 kb on - strand, within Ga0059261_0808at 850.272 kb on + strand, within Ga0059261_0808at 850.272 kb on + strand, within Ga0059261_0808at 850.273 kb on - strand, within Ga0059261_0808at 850.273 kb on - strand, within Ga0059261_0808at 850.273 kb on - strand, within Ga0059261_0808at 850.312 kb on - strand, within Ga0059261_0808at 850.515 kb on + strand, within Ga0059261_0808at 850.515 kb on + strand, within Ga0059261_0808at 850.516 kb on - strand, within Ga0059261_0808at 850.516 kb on - strand, within Ga0059261_0808at 850.516 kb on - strand, within Ga0059261_0808at 850.516 kb on - strand, within Ga0059261_0808at 850.524 kb on + strand, within Ga0059261_0808at 850.524 kb on + strand, within Ga0059261_0808at 850.535 kb on + strandat 850.535 kb on + strand, within Ga0059261_0808at 850.536 kb on - strand, within Ga0059261_0808at 850.536 kb on - strand, within Ga0059261_0808at 850.542 kb on + strand, within Ga0059261_0808at 850.542 kb on + strand, within Ga0059261_0808at 850.542 kb on + strand, within Ga0059261_0808at 850.543 kb on - strandat 850.543 kb on - strand, within Ga0059261_0808at 850.543 kb on - strand, within Ga0059261_0808at 850.740 kb on + strand, within Ga0059261_0808at 850.740 kb on + strand, within Ga0059261_0808at 850.740 kb on + strand, within Ga0059261_0808at 850.740 kb on + strandat 850.741 kb on - strand, within Ga0059261_0808at 850.741 kb on - strand, within Ga0059261_0808at 850.741 kb on - strand, within Ga0059261_0808at 850.779 kb on + strand, within Ga0059261_0808at 850.779 kb on + strand, within Ga0059261_0808at 850.779 kb on + strand, within Ga0059261_0808at 850.780 kb on - strand, within Ga0059261_0808at 850.780 kb on - strand, within Ga0059261_0808at 850.780 kb on - strand, within Ga0059261_0808at 850.911 kb on + strand, within Ga0059261_0808

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.015 mg/ml
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849,113 - -0.3
849,113 - -0.0
849,167 + -1.3
849,168 - -0.8
849,170 + +0.3
849,170 + -0.0
849,170 + -0.3
849,171 - +0.4
849,171 - +0.7
849,504 + Ga0059261_0807 0.45 +0.5
849,504 + Ga0059261_0807 0.45 +0.3
849,504 + Ga0059261_0807 0.45 +0.1
849,504 + Ga0059261_0807 0.45 -0.8
849,505 - Ga0059261_0807 0.45 +1.2
849,505 - Ga0059261_0807 0.45 -0.1
849,505 - Ga0059261_0807 0.45 +0.6
849,807 - Ga0059261_0807 0.86 -0.3
849,945 - -0.3
849,945 - -1.1
849,973 + -0.3
849,973 + -0.1
849,973 + -0.5
849,973 + +0.2
849,973 + +0.5
849,974 - -0.3
849,974 - -0.0
849,974 - +0.1
849,974 - +0.7
849,974 - +0.5
849,974 - +0.3
849,974 - -0.1
849,998 + +0.9
849,998 + -2.0
849,998 + +0.7
849,998 + +0.2
849,998 + -0.3
849,998 + -0.7
849,998 + +0.6
849,998 + +0.2
849,998 + -0.3
849,999 - +0.6
849,999 - +0.0
849,999 - +0.0
850,030 + +0.5
850,030 + +0.8
850,031 - -0.3
850,031 - +0.2
850,031 - -0.1
850,063 + +0.2
850,063 + +0.2
850,063 + +0.1
850,064 - -0.4
850,064 - +0.2
850,064 - +0.0
850,068 + -0.3
850,068 + +0.0
850,069 - +0.2
850,069 - -1.1
850,246 + Ga0059261_0808 0.11 -0.4
850,247 - Ga0059261_0808 0.11 +0.7
850,272 + Ga0059261_0808 0.13 -0.3
850,272 + Ga0059261_0808 0.13 -0.0
850,273 - Ga0059261_0808 0.13 +0.2
850,273 - Ga0059261_0808 0.13 -0.0
850,273 - Ga0059261_0808 0.13 -0.2
850,312 - Ga0059261_0808 0.16 -0.0
850,515 + Ga0059261_0808 0.31 -0.5
850,515 + Ga0059261_0808 0.31 +0.4
850,516 - Ga0059261_0808 0.31 -0.2
850,516 - Ga0059261_0808 0.31 -0.4
850,516 - Ga0059261_0808 0.31 -0.4
850,516 - Ga0059261_0808 0.31 -0.1
850,524 + Ga0059261_0808 0.32 +0.6
850,524 + Ga0059261_0808 0.32 -0.2
850,535 + -0.3
850,535 + Ga0059261_0808 0.32 -0.4
850,536 - Ga0059261_0808 0.32 -0.8
850,536 - Ga0059261_0808 0.32 +0.2
850,542 + Ga0059261_0808 0.33 -0.4
850,542 + Ga0059261_0808 0.33 -1.7
850,542 + Ga0059261_0808 0.33 +0.3
850,543 - +3.1
850,543 - Ga0059261_0808 0.33 -0.8
850,543 - Ga0059261_0808 0.33 +0.1
850,740 + Ga0059261_0808 0.48 +0.1
850,740 + Ga0059261_0808 0.48 -0.0
850,740 + Ga0059261_0808 0.48 -1.0
850,740 + -1.3
850,741 - Ga0059261_0808 0.48 +2.1
850,741 - Ga0059261_0808 0.48 +0.2
850,741 - Ga0059261_0808 0.48 -0.2
850,779 + Ga0059261_0808 0.51 -0.3
850,779 + Ga0059261_0808 0.51 -0.7
850,779 + Ga0059261_0808 0.51 +0.7
850,780 - Ga0059261_0808 0.51 -0.3
850,780 - Ga0059261_0808 0.51 +0.3
850,780 - Ga0059261_0808 0.51 +0.3
850,911 + Ga0059261_0808 0.61 +0.6

Or see this region's nucleotide sequence