Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0551

Experiment: Gentamicin 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0549 and Ga0059261_0550 overlap by 4 nucleotidesGa0059261_0550 and Ga0059261_0551 overlap by 1 nucleotidesGa0059261_0551 and Ga0059261_0552 are separated by 43 nucleotides Ga0059261_0549: Ga0059261_0549 - Domain of Unknown Function (DUF1080), at 563,838 to 564,653 _0549 Ga0059261_0550: Ga0059261_0550 - Hydroxypyruvate isomerase, at 564,650 to 565,573 _0550 Ga0059261_0551: Ga0059261_0551 - Cytochrome c2, at 565,573 to 565,956 _0551 Ga0059261_0552: Ga0059261_0552 - Predicted dehydrogenases and related proteins, at 566,000 to 567,166 _0552 Position (kb) 565 566Strain fitness (log2 ratio) -1 0 1 2at 564.684 kb on + strandat 564.685 kb on - strandat 564.759 kb on + strand, within Ga0059261_0550at 564.759 kb on + strand, within Ga0059261_0550at 564.759 kb on + strand, within Ga0059261_0550at 564.759 kb on + strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.853 kb on - strand, within Ga0059261_0550at 564.853 kb on - strand, within Ga0059261_0550at 564.919 kb on - strand, within Ga0059261_0550at 564.972 kb on + strand, within Ga0059261_0550at 564.972 kb on + strand, within Ga0059261_0550at 564.972 kb on + strand, within Ga0059261_0550at 564.973 kb on - strand, within Ga0059261_0550at 564.973 kb on - strand, within Ga0059261_0550at 564.973 kb on - strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.998 kb on + strandat 564.999 kb on - strand, within Ga0059261_0550at 564.999 kb on - strand, within Ga0059261_0550at 565.112 kb on - strand, within Ga0059261_0550at 565.461 kb on + strand, within Ga0059261_0550at 565.461 kb on + strand, within Ga0059261_0550at 565.461 kb on + strand, within Ga0059261_0550at 565.462 kb on - strand, within Ga0059261_0550at 565.462 kb on - strand, within Ga0059261_0550at 565.598 kb on + strandat 565.598 kb on + strandat 565.598 kb on + strandat 565.598 kb on + strandat 565.599 kb on - strandat 565.599 kb on - strandat 565.742 kb on + strand, within Ga0059261_0551at 565.742 kb on + strand, within Ga0059261_0551at 565.743 kb on - strand, within Ga0059261_0551at 565.779 kb on + strand, within Ga0059261_0551at 566.172 kb on + strand, within Ga0059261_0552at 566.172 kb on + strand, within Ga0059261_0552at 566.176 kb on + strand, within Ga0059261_0552at 566.176 kb on + strand, within Ga0059261_0552at 566.176 kb on + strand, within Ga0059261_0552at 566.177 kb on - strand, within Ga0059261_0552at 566.177 kb on - strand, within Ga0059261_0552at 566.177 kb on - strandat 566.177 kb on - strand, within Ga0059261_0552at 566.177 kb on - strandat 566.196 kb on + strand, within Ga0059261_0552at 566.664 kb on + strand, within Ga0059261_0552at 566.664 kb on + strand, within Ga0059261_0552at 566.675 kb on + strand, within Ga0059261_0552at 566.675 kb on + strand, within Ga0059261_0552at 566.675 kb on + strand, within Ga0059261_0552at 566.676 kb on - strandat 566.676 kb on - strandat 566.740 kb on - strand, within Ga0059261_0552at 566.748 kb on + strand, within Ga0059261_0552at 566.749 kb on - strand, within Ga0059261_0552at 566.749 kb on - strand, within Ga0059261_0552at 566.749 kb on - strand, within Ga0059261_0552

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.015 mg/ml
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564,684 + +1.1
564,685 - +0.5
564,759 + Ga0059261_0550 0.12 +1.0
564,759 + Ga0059261_0550 0.12 +0.5
564,759 + Ga0059261_0550 0.12 -0.3
564,759 + Ga0059261_0550 0.12 +0.2
564,760 - Ga0059261_0550 0.12 +0.7
564,760 - Ga0059261_0550 0.12 -0.5
564,760 - Ga0059261_0550 0.12 +0.5
564,760 - Ga0059261_0550 0.12 +0.4
564,795 + Ga0059261_0550 0.16 -0.2
564,795 + Ga0059261_0550 0.16 -0.9
564,795 + Ga0059261_0550 0.16 +0.5
564,795 + Ga0059261_0550 0.16 +0.5
564,796 - Ga0059261_0550 0.16 -0.3
564,796 - Ga0059261_0550 0.16 +0.3
564,796 - Ga0059261_0550 0.16 +0.4
564,796 - Ga0059261_0550 0.16 -0.7
564,796 - Ga0059261_0550 0.16 +0.0
564,796 - Ga0059261_0550 0.16 +1.0
564,796 - Ga0059261_0550 0.16 +0.8
564,853 - Ga0059261_0550 0.22 -0.5
564,853 - Ga0059261_0550 0.22 -0.3
564,919 - Ga0059261_0550 0.29 -0.3
564,972 + Ga0059261_0550 0.35 +0.2
564,972 + Ga0059261_0550 0.35 +0.3
564,972 + Ga0059261_0550 0.35 +0.0
564,973 - Ga0059261_0550 0.35 +0.2
564,973 - Ga0059261_0550 0.35 -0.1
564,973 - Ga0059261_0550 0.35 -1.6
564,996 + Ga0059261_0550 0.37 +0.0
564,996 + Ga0059261_0550 0.37 +0.1
564,996 + Ga0059261_0550 0.37 -0.3
564,996 + Ga0059261_0550 0.37 +0.3
564,996 + Ga0059261_0550 0.37 -0.8
564,996 + Ga0059261_0550 0.37 -0.3
564,997 - Ga0059261_0550 0.38 +0.4
564,997 - Ga0059261_0550 0.38 -1.6
564,997 - Ga0059261_0550 0.38 +0.3
564,997 - Ga0059261_0550 0.38 -1.0
564,997 - Ga0059261_0550 0.38 +0.2
564,997 - Ga0059261_0550 0.38 +1.4
564,998 + +0.7
564,999 - Ga0059261_0550 0.38 -0.3
564,999 - Ga0059261_0550 0.38 +0.2
565,112 - Ga0059261_0550 0.50 +0.7
565,461 + Ga0059261_0550 0.88 -0.6
565,461 + Ga0059261_0550 0.88 -0.7
565,461 + Ga0059261_0550 0.88 +0.0
565,462 - Ga0059261_0550 0.88 +0.9
565,462 - Ga0059261_0550 0.88 +1.2
565,598 + +0.1
565,598 + -1.0
565,598 + -0.3
565,598 + -1.0
565,599 - -1.4
565,599 - -0.3
565,742 + Ga0059261_0551 0.44 -0.1
565,742 + Ga0059261_0551 0.44 +1.0
565,743 - Ga0059261_0551 0.44 +0.0
565,779 + Ga0059261_0551 0.54 +0.2
566,172 + Ga0059261_0552 0.15 -0.5
566,172 + Ga0059261_0552 0.15 +0.1
566,176 + Ga0059261_0552 0.15 -0.7
566,176 + Ga0059261_0552 0.15 -0.5
566,176 + Ga0059261_0552 0.15 +0.5
566,177 - Ga0059261_0552 0.15 +1.2
566,177 - Ga0059261_0552 0.15 +0.9
566,177 - -0.3
566,177 - Ga0059261_0552 0.15 -1.1
566,177 - -0.8
566,196 + Ga0059261_0552 0.17 -0.3
566,664 + Ga0059261_0552 0.57 -0.3
566,664 + Ga0059261_0552 0.57 -0.9
566,675 + Ga0059261_0552 0.58 +0.0
566,675 + Ga0059261_0552 0.58 -0.2
566,675 + Ga0059261_0552 0.58 +0.5
566,676 - +0.7
566,676 - +2.7
566,740 - Ga0059261_0552 0.63 +0.2
566,748 + Ga0059261_0552 0.64 -1.6
566,749 - Ga0059261_0552 0.64 +1.5
566,749 - Ga0059261_0552 0.64 -0.8
566,749 - Ga0059261_0552 0.64 -1.5

Or see this region's nucleotide sequence