Experiment: Gentamicin 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0156 and Ga0059261_0157 are separated by 9 nucleotides Ga0059261_0157 and Ga0059261_0158 are separated by 98 nucleotides Ga0059261_0158 and Ga0059261_0159 are separated by 108 nucleotides
Ga0059261_0156: Ga0059261_0156 - alkyl hydroperoxide reductase subunit F, at 146,300 to 147,877
_0156
Ga0059261_0157: Ga0059261_0157 - AraC-type DNA-binding domain-containing proteins, at 147,887 to 148,786
_0157
Ga0059261_0158: Ga0059261_0158 - short chain dehydrogenase, at 148,885 to 149,628
_0158
Ga0059261_0159: Ga0059261_0159 - Transcriptional regulator, at 149,737 to 150,672
_0159
Position (kb) 147
148
149 Strain fitness (log2 ratio) -2
-1
0
1 at 146.981 kb on + strand, within Ga0059261_0156 at 146.981 kb on + strand, within Ga0059261_0156 at 146.981 kb on + strand, within Ga0059261_0156 at 146.981 kb on + strand, within Ga0059261_0156 at 146.981 kb on + strand, within Ga0059261_0156 at 146.981 kb on + strand, within Ga0059261_0156 at 146.981 kb on + strand at 146.981 kb on + strand, within Ga0059261_0156 at 146.982 kb on - strand, within Ga0059261_0156 at 146.982 kb on - strand, within Ga0059261_0156 at 146.982 kb on - strand, within Ga0059261_0156 at 147.080 kb on + strand, within Ga0059261_0156 at 147.080 kb on + strand, within Ga0059261_0156 at 147.081 kb on - strand, within Ga0059261_0156 at 147.081 kb on - strand, within Ga0059261_0156 at 147.302 kb on + strand, within Ga0059261_0156 at 147.323 kb on + strand, within Ga0059261_0156 at 147.324 kb on - strand, within Ga0059261_0156 at 147.449 kb on + strand, within Ga0059261_0156 at 147.450 kb on - strand, within Ga0059261_0156 at 147.450 kb on - strand, within Ga0059261_0156 at 147.450 kb on - strand, within Ga0059261_0156 at 147.575 kb on + strand, within Ga0059261_0156 at 147.575 kb on + strand, within Ga0059261_0156 at 147.575 kb on + strand, within Ga0059261_0156 at 147.576 kb on - strand, within Ga0059261_0156 at 147.576 kb on - strand, within Ga0059261_0156 at 147.576 kb on - strand, within Ga0059261_0156 at 147.576 kb on - strand, within Ga0059261_0156 at 147.576 kb on - strand, within Ga0059261_0156 at 147.770 kb on + strand at 147.770 kb on + strand at 147.771 kb on - strand at 147.771 kb on - strand at 147.830 kb on + strand at 147.830 kb on + strand at 147.830 kb on + strand at 147.830 kb on + strand at 147.830 kb on + strand at 147.830 kb on + strand at 147.831 kb on - strand at 147.855 kb on - strand at 147.906 kb on + strand at 147.906 kb on + strand at 147.907 kb on - strand at 147.907 kb on - strand at 147.907 kb on - strand at 147.907 kb on - strand at 147.907 kb on - strand at 147.970 kb on - strand at 147.970 kb on - strand at 148.056 kb on + strand, within Ga0059261_0157 at 148.056 kb on + strand, within Ga0059261_0157 at 148.057 kb on - strand, within Ga0059261_0157 at 148.057 kb on - strand, within Ga0059261_0157 at 148.057 kb on - strand, within Ga0059261_0157 at 148.057 kb on - strand, within Ga0059261_0157 at 148.057 kb on - strand, within Ga0059261_0157 at 148.057 kb on - strand, within Ga0059261_0157 at 148.057 kb on - strand, within Ga0059261_0157 at 148.417 kb on + strand, within Ga0059261_0157 at 148.417 kb on + strand, within Ga0059261_0157 at 148.461 kb on + strand, within Ga0059261_0157 at 148.663 kb on + strand, within Ga0059261_0157 at 148.663 kb on + strand, within Ga0059261_0157 at 148.663 kb on + strand, within Ga0059261_0157 at 148.664 kb on - strand at 148.664 kb on - strand, within Ga0059261_0157 at 148.664 kb on - strand, within Ga0059261_0157 at 148.683 kb on + strand, within Ga0059261_0157 at 148.683 kb on + strand, within Ga0059261_0157 at 148.684 kb on - strand, within Ga0059261_0157 at 148.684 kb on - strand, within Ga0059261_0157 at 148.692 kb on + strand, within Ga0059261_0157 at 148.787 kb on - strand at 148.805 kb on + strand at 148.805 kb on + strand at 148.922 kb on - strand at 148.983 kb on + strand, within Ga0059261_0158 at 148.984 kb on - strand, within Ga0059261_0158 at 149.003 kb on + strand, within Ga0059261_0158 at 149.004 kb on - strand, within Ga0059261_0158 at 149.058 kb on + strand, within Ga0059261_0158 at 149.059 kb on - strand, within Ga0059261_0158 at 149.059 kb on - strand, within Ga0059261_0158 at 149.302 kb on + strand, within Ga0059261_0158 at 149.303 kb on - strand, within Ga0059261_0158 at 149.303 kb on - strand, within Ga0059261_0158 at 149.303 kb on - strand, within Ga0059261_0158 at 149.399 kb on - strand, within Ga0059261_0158 at 149.399 kb on - strand, within Ga0059261_0158 at 149.399 kb on - strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.464 kb on + strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.465 kb on - strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.466 kb on + strand, within Ga0059261_0158 at 149.467 kb on - strand, within Ga0059261_0158 at 149.467 kb on - strand, within Ga0059261_0158 at 149.467 kb on - strand, within Ga0059261_0158 at 149.467 kb on - strand, within Ga0059261_0158 at 149.467 kb on - strand, within Ga0059261_0158 at 149.467 kb on - strand, within Ga0059261_0158 at 149.467 kb on - strand, within Ga0059261_0158 at 149.467 kb on - strand, within Ga0059261_0158 at 149.467 kb on - strand, within Ga0059261_0158 at 149.467 kb on - strand, within Ga0059261_0158 at 149.467 kb on - strand, within Ga0059261_0158 at 149.467 kb on - strand, within Ga0059261_0158 at 149.467 kb on - strand, within Ga0059261_0158 at 149.467 kb on - strand, within Ga0059261_0158 at 149.467 kb on - strand, within Ga0059261_0158 at 149.626 kb on + strand at 149.685 kb on + strand at 149.685 kb on + strand at 149.704 kb on + strand at 149.704 kb on + strand at 149.704 kb on + strand at 149.704 kb on + strand at 149.705 kb on - strand at 149.705 kb on - strand at 149.705 kb on - strand at 149.706 kb on + strand at 149.706 kb on + strand at 149.706 kb on + strand at 149.707 kb on - strand at 149.707 kb on - strand at 149.749 kb on + strand at 149.749 kb on + strand at 149.749 kb on + strand at 149.749 kb on + strand at 149.750 kb on - strand at 149.750 kb on - strand at 149.750 kb on - strand at 149.750 kb on - strand at 149.757 kb on + strand at 149.776 kb on + strand at 149.776 kb on + strand at 149.777 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.015 mg/ml remove 146,981 + Ga0059261_0156 0.43 -0.5 146,981 + Ga0059261_0156 0.43 +0.1 146,981 + Ga0059261_0156 0.43 -1.0 146,981 + Ga0059261_0156 0.43 -0.4 146,981 + Ga0059261_0156 0.43 +0.5 146,981 + Ga0059261_0156 0.43 -0.8 146,981 + +0.7 146,981 + Ga0059261_0156 0.43 -0.7 146,982 - Ga0059261_0156 0.43 +0.1 146,982 - Ga0059261_0156 0.43 -0.8 146,982 - Ga0059261_0156 0.43 -0.3 147,080 + Ga0059261_0156 0.49 -0.5 147,080 + Ga0059261_0156 0.49 +0.2 147,081 - Ga0059261_0156 0.49 -0.1 147,081 - Ga0059261_0156 0.49 +0.6 147,302 + Ga0059261_0156 0.63 -1.0 147,323 + Ga0059261_0156 0.65 -0.4 147,324 - Ga0059261_0156 0.65 -0.1 147,449 + Ga0059261_0156 0.73 -1.3 147,450 - Ga0059261_0156 0.73 +0.3 147,450 - Ga0059261_0156 0.73 +0.4 147,450 - Ga0059261_0156 0.73 -0.8 147,575 + Ga0059261_0156 0.81 +1.0 147,575 + Ga0059261_0156 0.81 -0.6 147,575 + Ga0059261_0156 0.81 -0.5 147,576 - Ga0059261_0156 0.81 -0.2 147,576 - Ga0059261_0156 0.81 -0.2 147,576 - Ga0059261_0156 0.81 +0.4 147,576 - Ga0059261_0156 0.81 -0.0 147,576 - Ga0059261_0156 0.81 +0.1 147,770 + -0.4 147,770 + -0.1 147,771 - +0.7 147,771 - -0.5 147,830 + -0.2 147,830 + +1.1 147,830 + +0.4 147,830 + -0.4 147,830 + +1.0 147,830 + +0.1 147,831 - +0.1 147,855 - +0.1 147,906 + -0.3 147,906 + +1.0 147,907 - -0.2 147,907 - +0.4 147,907 - -0.4 147,907 - -0.6 147,907 - +0.5 147,970 - +0.1 147,970 - +0.7 148,056 + Ga0059261_0157 0.19 +0.4 148,056 + Ga0059261_0157 0.19 -0.1 148,057 - Ga0059261_0157 0.19 -1.8 148,057 - Ga0059261_0157 0.19 +0.1 148,057 - Ga0059261_0157 0.19 +0.8 148,057 - Ga0059261_0157 0.19 +0.4 148,057 - Ga0059261_0157 0.19 -0.5 148,057 - Ga0059261_0157 0.19 +0.6 148,057 - Ga0059261_0157 0.19 -0.0 148,417 + Ga0059261_0157 0.59 -0.5 148,417 + Ga0059261_0157 0.59 +0.9 148,461 + Ga0059261_0157 0.64 +0.6 148,663 + Ga0059261_0157 0.86 -0.4 148,663 + Ga0059261_0157 0.86 +1.0 148,663 + Ga0059261_0157 0.86 +0.9 148,664 - -0.3 148,664 - Ga0059261_0157 0.86 -0.3 148,664 - Ga0059261_0157 0.86 +0.2 148,683 + Ga0059261_0157 0.88 +0.1 148,683 + Ga0059261_0157 0.88 +0.7 148,684 - Ga0059261_0157 0.89 +0.8 148,684 - Ga0059261_0157 0.89 -0.0 148,692 + Ga0059261_0157 0.89 +0.2 148,787 - -0.7 148,805 + -0.6 148,805 + -0.7 148,922 - +1.7 148,983 + Ga0059261_0158 0.13 -0.0 148,984 - Ga0059261_0158 0.13 -0.2 149,003 + Ga0059261_0158 0.16 -0.5 149,004 - Ga0059261_0158 0.16 -0.2 149,058 + Ga0059261_0158 0.23 +0.7 149,059 - Ga0059261_0158 0.23 +0.2 149,059 - Ga0059261_0158 0.23 +0.3 149,302 + Ga0059261_0158 0.56 -0.1 149,303 - Ga0059261_0158 0.56 +0.2 149,303 - Ga0059261_0158 0.56 +0.6 149,303 - Ga0059261_0158 0.56 +0.2 149,399 - Ga0059261_0158 0.69 -0.3 149,399 - Ga0059261_0158 0.69 -0.2 149,399 - Ga0059261_0158 0.69 +0.3 149,464 + Ga0059261_0158 0.78 -0.5 149,464 + Ga0059261_0158 0.78 -0.6 149,464 + Ga0059261_0158 0.78 -0.1 149,464 + Ga0059261_0158 0.78 +0.6 149,464 + Ga0059261_0158 0.78 +0.4 149,464 + Ga0059261_0158 0.78 -0.5 149,464 + Ga0059261_0158 0.78 +0.5 149,464 + Ga0059261_0158 0.78 +0.5 149,464 + Ga0059261_0158 0.78 -0.3 149,464 + Ga0059261_0158 0.78 +0.1 149,464 + Ga0059261_0158 0.78 -0.4 149,464 + Ga0059261_0158 0.78 -0.2 149,464 + Ga0059261_0158 0.78 -0.3 149,464 + Ga0059261_0158 0.78 -0.0 149,464 + Ga0059261_0158 0.78 -0.5 149,464 + Ga0059261_0158 0.78 +0.6 149,465 - Ga0059261_0158 0.78 -0.3 149,465 - Ga0059261_0158 0.78 +0.5 149,465 - +1.7 149,465 - Ga0059261_0158 0.78 +0.3 149,465 - Ga0059261_0158 0.78 -0.9 149,465 - Ga0059261_0158 0.78 +0.6 149,465 - Ga0059261_0158 0.78 +0.4 149,465 - Ga0059261_0158 0.78 -0.0 149,465 - Ga0059261_0158 0.78 -1.3 149,465 - Ga0059261_0158 0.78 +0.7 149,465 - Ga0059261_0158 0.78 -0.2 149,465 - Ga0059261_0158 0.78 -1.0 149,465 - Ga0059261_0158 0.78 +0.6 149,465 - Ga0059261_0158 0.78 -0.3 149,465 - Ga0059261_0158 0.78 -0.0 149,465 - Ga0059261_0158 0.78 -0.1 149,465 - Ga0059261_0158 0.78 -0.4 149,465 - Ga0059261_0158 0.78 -0.7 149,465 - Ga0059261_0158 0.78 +0.6 149,465 - Ga0059261_0158 0.78 -0.3 149,465 - Ga0059261_0158 0.78 -0.5 149,465 - Ga0059261_0158 0.78 +0.1 149,466 + Ga0059261_0158 0.78 +0.4 149,466 + Ga0059261_0158 0.78 +0.2 149,466 + Ga0059261_0158 0.78 -1.1 149,466 + Ga0059261_0158 0.78 +0.4 149,466 + Ga0059261_0158 0.78 -0.9 149,466 + Ga0059261_0158 0.78 +0.3 149,466 + Ga0059261_0158 0.78 +0.0 149,466 + Ga0059261_0158 0.78 +0.3 149,466 + Ga0059261_0158 0.78 -2.3 149,466 + Ga0059261_0158 0.78 -0.1 149,466 + Ga0059261_0158 0.78 -1.0 149,466 + Ga0059261_0158 0.78 -0.7 149,466 + Ga0059261_0158 0.78 +0.0 149,466 + Ga0059261_0158 0.78 +0.1 149,466 + Ga0059261_0158 0.78 +0.3 149,466 + Ga0059261_0158 0.78 +0.1 149,467 - Ga0059261_0158 0.78 -0.5 149,467 - Ga0059261_0158 0.78 +0.0 149,467 - Ga0059261_0158 0.78 -0.1 149,467 - Ga0059261_0158 0.78 +0.1 149,467 - Ga0059261_0158 0.78 -0.5 149,467 - Ga0059261_0158 0.78 +0.0 149,467 - Ga0059261_0158 0.78 +0.3 149,467 - Ga0059261_0158 0.78 -1.8 149,467 - Ga0059261_0158 0.78 -0.8 149,467 - Ga0059261_0158 0.78 -0.3 149,467 - Ga0059261_0158 0.78 +0.3 149,467 - Ga0059261_0158 0.78 +0.6 149,467 - Ga0059261_0158 0.78 +0.4 149,467 - Ga0059261_0158 0.78 +0.5 149,467 - Ga0059261_0158 0.78 +0.3 149,626 + +0.4 149,685 + -0.2 149,685 + +0.5 149,704 + -0.6 149,704 + -1.0 149,704 + -0.5 149,704 + -0.4 149,705 - +0.2 149,705 - -0.2 149,705 - -0.3 149,706 + +0.3 149,706 + -0.8 149,706 + -0.3 149,707 - +0.1 149,707 - +0.3 149,749 + -0.7 149,749 + +0.7 149,749 + -0.4 149,749 + -0.1 149,750 - -0.7 149,750 - -0.7 149,750 - -0.5 149,750 - -0.1 149,757 + -0.3 149,776 + -0.4 149,776 + -0.6 149,777 - +1.3
Or see this region's nucleotide sequence