Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0143

Experiment: Gentamicin 0.015 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0142 and Ga0059261_0143 are separated by 212 nucleotidesGa0059261_0143 and Ga0059261_0144 are separated by 243 nucleotides Ga0059261_0142: Ga0059261_0142 - Arabinose efflux permease, at 136,035 to 137,234 _0142 Ga0059261_0143: Ga0059261_0143 - hypothetical protein, at 137,447 to 137,803 _0143 Ga0059261_0144: Ga0059261_0144 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12), at 138,047 to 139,198 _0144 Position (kb) 137 138Strain fitness (log2 ratio) -2 -1 0 1 2at 136.515 kb on - strand, within Ga0059261_0142at 136.716 kb on + strand, within Ga0059261_0142at 136.716 kb on + strand, within Ga0059261_0142at 136.717 kb on - strand, within Ga0059261_0142at 136.717 kb on - strand, within Ga0059261_0142at 136.717 kb on - strand, within Ga0059261_0142at 136.717 kb on - strand, within Ga0059261_0142at 136.717 kb on - strand, within Ga0059261_0142at 136.717 kb on - strand, within Ga0059261_0142at 136.740 kb on + strand, within Ga0059261_0142at 136.741 kb on - strand, within Ga0059261_0142at 136.741 kb on - strand, within Ga0059261_0142at 136.741 kb on - strand, within Ga0059261_0142at 136.741 kb on - strand, within Ga0059261_0142at 136.741 kb on - strand, within Ga0059261_0142at 136.741 kb on - strand, within Ga0059261_0142at 136.741 kb on - strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strandat 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strandat 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.793 kb on + strand, within Ga0059261_0142at 136.953 kb on + strand, within Ga0059261_0142at 136.953 kb on + strand, within Ga0059261_0142at 136.953 kb on + strand, within Ga0059261_0142at 136.953 kb on + strand, within Ga0059261_0142at 136.954 kb on - strand, within Ga0059261_0142at 136.954 kb on - strand, within Ga0059261_0142at 136.954 kb on - strand, within Ga0059261_0142at 136.954 kb on - strand, within Ga0059261_0142at 137.183 kb on - strandat 137.183 kb on - strandat 137.183 kb on - strandat 137.201 kb on + strandat 137.232 kb on + strandat 137.287 kb on + strandat 137.366 kb on + strandat 137.366 kb on + strandat 137.366 kb on + strandat 137.366 kb on + strandat 137.366 kb on + strandat 137.366 kb on + strandat 137.367 kb on - strandat 137.367 kb on - strandat 137.367 kb on - strandat 137.367 kb on - strandat 137.367 kb on - strandat 137.367 kb on - strandat 137.367 kb on - strandat 137.367 kb on - strandat 137.405 kb on + strandat 137.405 kb on + strandat 137.405 kb on + strandat 137.427 kb on - strandat 137.436 kb on - strandat 137.455 kb on + strandat 137.455 kb on + strandat 137.456 kb on - strandat 137.569 kb on + strand, within Ga0059261_0143at 137.569 kb on + strand, within Ga0059261_0143at 137.569 kb on + strand, within Ga0059261_0143at 137.569 kb on + strand, within Ga0059261_0143at 137.569 kb on + strandat 137.569 kb on + strand, within Ga0059261_0143at 137.569 kb on + strandat 137.570 kb on - strand, within Ga0059261_0143at 137.570 kb on - strand, within Ga0059261_0143at 137.570 kb on - strand, within Ga0059261_0143at 137.570 kb on - strand, within Ga0059261_0143at 137.570 kb on - strand, within Ga0059261_0143at 137.570 kb on - strand, within Ga0059261_0143at 137.570 kb on - strand, within Ga0059261_0143at 137.570 kb on - strand, within Ga0059261_0143at 137.570 kb on - strand, within Ga0059261_0143at 137.570 kb on - strand, within Ga0059261_0143at 137.779 kb on + strandat 137.779 kb on + strandat 137.780 kb on - strandat 137.780 kb on - strandat 137.780 kb on - strandat 137.780 kb on - strandat 137.780 kb on - strandat 137.780 kb on - strandat 137.780 kb on - strandat 137.780 kb on - strandat 137.780 kb on - strandat 137.801 kb on + strandat 137.801 kb on + strandat 137.868 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.015 mg/ml
remove
136,515 - Ga0059261_0142 0.40 +0.5
136,716 + Ga0059261_0142 0.57 -0.1
136,716 + Ga0059261_0142 0.57 -2.1
136,717 - Ga0059261_0142 0.57 -0.6
136,717 - Ga0059261_0142 0.57 -0.1
136,717 - Ga0059261_0142 0.57 +0.5
136,717 - Ga0059261_0142 0.57 +0.1
136,717 - Ga0059261_0142 0.57 +0.3
136,717 - Ga0059261_0142 0.57 +0.7
136,740 + Ga0059261_0142 0.59 -1.0
136,741 - Ga0059261_0142 0.59 -1.9
136,741 - Ga0059261_0142 0.59 +1.3
136,741 - Ga0059261_0142 0.59 +0.0
136,741 - Ga0059261_0142 0.59 +0.6
136,741 - Ga0059261_0142 0.59 +0.1
136,741 - Ga0059261_0142 0.59 -1.3
136,741 - Ga0059261_0142 0.59 -1.1
136,746 + Ga0059261_0142 0.59 +0.0
136,746 + Ga0059261_0142 0.59 -0.0
136,746 + Ga0059261_0142 0.59 -0.1
136,746 + Ga0059261_0142 0.59 +0.5
136,746 + Ga0059261_0142 0.59 -0.5
136,746 + Ga0059261_0142 0.59 +1.0
136,746 + Ga0059261_0142 0.59 -0.4
136,746 + Ga0059261_0142 0.59 -0.3
136,746 + Ga0059261_0142 0.59 +0.5
136,746 + Ga0059261_0142 0.59 -1.8
136,746 + Ga0059261_0142 0.59 -0.1
136,746 + Ga0059261_0142 0.59 -0.7
136,746 + Ga0059261_0142 0.59 +1.1
136,746 + Ga0059261_0142 0.59 -0.6
136,746 + -0.1
136,747 - Ga0059261_0142 0.59 +0.2
136,747 - Ga0059261_0142 0.59 +0.2
136,747 - Ga0059261_0142 0.59 +0.4
136,747 - Ga0059261_0142 0.59 +0.2
136,747 - Ga0059261_0142 0.59 -0.2
136,747 - Ga0059261_0142 0.59 -0.4
136,747 - +0.7
136,747 - Ga0059261_0142 0.59 -0.6
136,747 - Ga0059261_0142 0.59 -0.2
136,747 - Ga0059261_0142 0.59 -0.7
136,747 - Ga0059261_0142 0.59 -0.8
136,793 + Ga0059261_0142 0.63 -1.4
136,953 + Ga0059261_0142 0.77 +0.4
136,953 + Ga0059261_0142 0.77 +0.1
136,953 + Ga0059261_0142 0.77 -0.3
136,953 + Ga0059261_0142 0.77 +0.3
136,954 - Ga0059261_0142 0.77 -0.3
136,954 - Ga0059261_0142 0.77 +0.2
136,954 - Ga0059261_0142 0.77 +2.3
136,954 - Ga0059261_0142 0.77 +0.4
137,183 - +0.2
137,183 - -0.8
137,183 - -0.3
137,201 + -0.3
137,232 + +0.5
137,287 + +0.2
137,366 + -0.6
137,366 + -0.3
137,366 + +0.5
137,366 + +0.1
137,366 + +0.0
137,366 + +0.7
137,367 - +0.1
137,367 - -0.1
137,367 - +0.3
137,367 - +0.6
137,367 - +0.9
137,367 - -1.8
137,367 - -1.0
137,367 - -0.6
137,405 + -0.8
137,405 + -1.8
137,405 + -0.4
137,427 - +0.2
137,436 - +1.3
137,455 + -0.8
137,455 + -0.4
137,456 - +0.3
137,569 + Ga0059261_0143 0.34 +0.3
137,569 + Ga0059261_0143 0.34 +0.3
137,569 + Ga0059261_0143 0.34 +0.4
137,569 + Ga0059261_0143 0.34 -0.6
137,569 + +0.7
137,569 + Ga0059261_0143 0.34 +0.2
137,569 + +0.7
137,570 - Ga0059261_0143 0.34 +0.2
137,570 - Ga0059261_0143 0.34 +0.2
137,570 - Ga0059261_0143 0.34 +1.5
137,570 - Ga0059261_0143 0.34 -0.1
137,570 - Ga0059261_0143 0.34 -0.0
137,570 - Ga0059261_0143 0.34 +0.9
137,570 - Ga0059261_0143 0.34 +0.5
137,570 - Ga0059261_0143 0.34 +0.2
137,570 - Ga0059261_0143 0.34 +0.5
137,570 - Ga0059261_0143 0.34 -0.6
137,779 + +1.1
137,779 + -0.8
137,780 - +0.4
137,780 - -0.5
137,780 - +0.4
137,780 - -1.3
137,780 - +0.3
137,780 - +0.2
137,780 - +0.1
137,780 - +1.0
137,780 - +0.7
137,801 + -0.7
137,801 + +0.2
137,868 + -0.7

Or see this region's nucleotide sequence