Experiment: Gentamicin 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0101 and Ga0059261_0102 are separated by 49 nucleotides Ga0059261_0102 and Ga0059261_0103 are separated by 159 nucleotides Ga0059261_0103 and Ga0059261_0104 are separated by 148 nucleotides Ga0059261_0104 and Ga0059261_0105 are separated by 273 nucleotides
Ga0059261_0101: Ga0059261_0101 - Peptidase family M1, at 94,246 to 95,940
_0101
Ga0059261_0102: Ga0059261_0102 - endopeptidase La, at 95,990 to 98,383
_0102
Ga0059261_0103: Ga0059261_0103 - Bacterial nucleoid DNA-binding protein, at 98,543 to 98,815
_0103
Ga0059261_0104: Ga0059261_0104 - tRNA, at 98,964 to 99,038
_0104
Ga0059261_0105: Ga0059261_0105 - hypothetical protein, at 99,312 to 100,955
_0105
Position (kb) 95
96
97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 94.990 kb on - strand, within Ga0059261_0101 at 94.990 kb on - strand, within Ga0059261_0101 at 94.990 kb on - strand, within Ga0059261_0101 at 94.990 kb on - strand, within Ga0059261_0101 at 94.990 kb on - strand, within Ga0059261_0101 at 94.990 kb on - strand, within Ga0059261_0101 at 94.991 kb on + strand, within Ga0059261_0101 at 94.991 kb on + strand, within Ga0059261_0101 at 94.992 kb on - strand, within Ga0059261_0101 at 94.992 kb on - strand, within Ga0059261_0101 at 95.207 kb on + strand, within Ga0059261_0101 at 95.207 kb on + strand, within Ga0059261_0101 at 95.207 kb on + strand, within Ga0059261_0101 at 95.208 kb on - strand, within Ga0059261_0101 at 95.208 kb on - strand, within Ga0059261_0101 at 95.229 kb on - strand, within Ga0059261_0101 at 95.255 kb on + strand, within Ga0059261_0101 at 95.256 kb on - strand, within Ga0059261_0101 at 95.386 kb on + strand, within Ga0059261_0101 at 95.387 kb on - strand, within Ga0059261_0101 at 95.435 kb on + strand, within Ga0059261_0101 at 95.436 kb on - strand, within Ga0059261_0101 at 95.647 kb on + strand, within Ga0059261_0101 at 95.647 kb on + strand at 95.647 kb on + strand, within Ga0059261_0101 at 95.647 kb on + strand, within Ga0059261_0101 at 95.647 kb on + strand, within Ga0059261_0101 at 95.647 kb on + strand, within Ga0059261_0101 at 95.647 kb on + strand, within Ga0059261_0101 at 95.647 kb on + strand, within Ga0059261_0101 at 95.647 kb on + strand, within Ga0059261_0101 at 95.648 kb on - strand, within Ga0059261_0101 at 95.648 kb on - strand, within Ga0059261_0101 at 95.648 kb on - strand, within Ga0059261_0101 at 95.648 kb on - strand, within Ga0059261_0101 at 95.649 kb on + strand, within Ga0059261_0101 at 95.649 kb on + strand, within Ga0059261_0101 at 95.649 kb on + strand, within Ga0059261_0101 at 95.649 kb on + strand, within Ga0059261_0101 at 95.649 kb on + strand, within Ga0059261_0101 at 95.649 kb on + strand, within Ga0059261_0101 at 95.649 kb on + strand, within Ga0059261_0101 at 95.650 kb on - strand, within Ga0059261_0101 at 95.650 kb on - strand, within Ga0059261_0101 at 95.791 kb on + strand at 95.791 kb on + strand at 95.791 kb on + strand at 95.791 kb on + strand at 95.792 kb on - strand at 95.792 kb on - strand at 95.792 kb on - strand at 95.792 kb on - strand at 95.792 kb on - strand at 95.792 kb on - strand at 95.792 kb on - strand at 95.945 kb on + strand at 95.945 kb on + strand at 95.945 kb on + strand at 95.945 kb on + strand at 95.945 kb on + strand at 95.946 kb on - strand at 95.947 kb on + strand at 95.947 kb on + strand at 95.947 kb on + strand at 95.947 kb on + strand at 95.947 kb on + strand at 95.947 kb on + strand at 95.947 kb on + strand at 95.948 kb on - strand at 95.948 kb on - strand at 95.948 kb on - strand at 95.948 kb on - strand at 95.948 kb on - strand at 95.948 kb on - strand at 95.948 kb on - strand at 95.985 kb on + strand at 95.985 kb on + strand at 95.985 kb on + strand at 95.985 kb on + strand at 95.985 kb on + strand at 95.986 kb on - strand at 95.986 kb on - strand at 95.986 kb on - strand at 96.002 kb on + strand at 96.002 kb on + strand at 96.002 kb on + strand at 96.002 kb on + strand at 96.003 kb on - strand at 96.235 kb on - strand, within Ga0059261_0102 at 96.606 kb on - strand, within Ga0059261_0102 at 96.653 kb on + strand, within Ga0059261_0102 at 96.654 kb on - strand, within Ga0059261_0102 at 96.654 kb on - strand, within Ga0059261_0102 at 96.656 kb on + strand, within Ga0059261_0102 at 96.656 kb on + strand, within Ga0059261_0102 at 96.656 kb on + strand, within Ga0059261_0102 at 96.657 kb on - strand, within Ga0059261_0102 at 96.657 kb on - strand, within Ga0059261_0102 at 96.657 kb on - strand, within Ga0059261_0102 at 96.657 kb on - strand, within Ga0059261_0102 at 96.857 kb on + strand, within Ga0059261_0102 at 96.857 kb on + strand, within Ga0059261_0102 at 96.858 kb on - strand, within Ga0059261_0102 at 96.858 kb on - strand, within Ga0059261_0102 at 96.858 kb on - strand, within Ga0059261_0102 at 96.858 kb on - strand, within Ga0059261_0102 at 96.950 kb on + strand, within Ga0059261_0102 at 96.951 kb on - strand, within Ga0059261_0102 at 96.951 kb on - strand at 96.951 kb on - strand at 96.951 kb on - strand, within Ga0059261_0102 at 96.951 kb on - strand, within Ga0059261_0102 at 97.132 kb on - strand, within Ga0059261_0102 at 97.132 kb on - strand, within Ga0059261_0102 at 97.132 kb on - strand, within Ga0059261_0102 at 97.169 kb on + strand, within Ga0059261_0102 at 97.169 kb on + strand, within Ga0059261_0102 at 97.169 kb on + strand at 97.169 kb on + strand, within Ga0059261_0102 at 97.170 kb on - strand, within Ga0059261_0102 at 97.170 kb on - strand, within Ga0059261_0102 at 97.170 kb on - strand, within Ga0059261_0102 at 97.170 kb on - strand, within Ga0059261_0102 at 97.170 kb on - strand, within Ga0059261_0102 at 97.344 kb on - strand, within Ga0059261_0102 at 97.344 kb on - strand, within Ga0059261_0102 at 97.455 kb on - strand, within Ga0059261_0102 at 97.455 kb on - strand, within Ga0059261_0102 at 97.456 kb on + strand, within Ga0059261_0102 at 97.580 kb on + strand, within Ga0059261_0102 at 97.580 kb on + strand, within Ga0059261_0102 at 97.580 kb on + strand, within Ga0059261_0102 at 97.580 kb on + strand, within Ga0059261_0102 at 97.581 kb on - strand, within Ga0059261_0102 at 97.724 kb on + strand, within Ga0059261_0102 at 97.928 kb on + strand, within Ga0059261_0102 at 97.928 kb on + strand, within Ga0059261_0102 at 97.963 kb on + strand, within Ga0059261_0102 at 97.965 kb on + strand at 97.970 kb on - strand, within Ga0059261_0102 at 98.095 kb on + strand, within Ga0059261_0102 at 98.096 kb on - strand, within Ga0059261_0102 at 98.096 kb on - strand, within Ga0059261_0102 at 98.195 kb on + strand at 98.308 kb on - strand at 98.308 kb on - strand at 98.308 kb on - strand at 98.381 kb on + strand at 98.381 kb on + strand at 98.382 kb on - strand at 98.382 kb on - strand at 98.382 kb on - strand at 98.382 kb on - strand at 98.445 kb on + strand at 98.445 kb on + strand at 98.513 kb on + strand at 98.514 kb on - strand at 98.536 kb on + strand at 98.536 kb on + strand at 98.536 kb on + strand at 98.536 kb on + strand at 98.537 kb on - strand at 98.537 kb on - strand at 98.537 kb on - strand at 98.537 kb on - strand at 98.871 kb on + strand at 98.871 kb on + strand at 98.871 kb on + strand at 98.939 kb on + strand at 99.105 kb on + strand at 99.106 kb on - strand at 99.130 kb on + strand at 99.130 kb on + strand at 99.130 kb on + strand at 99.131 kb on - strand at 99.131 kb on - strand at 99.131 kb on - strand at 99.156 kb on + strand at 99.156 kb on + strand at 99.157 kb on - strand at 99.157 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.015 mg/ml remove 94,990 - Ga0059261_0101 0.44 +0.3 94,990 - Ga0059261_0101 0.44 +0.5 94,990 - Ga0059261_0101 0.44 -0.1 94,990 - Ga0059261_0101 0.44 +0.4 94,990 - Ga0059261_0101 0.44 +0.7 94,990 - Ga0059261_0101 0.44 +0.3 94,991 + Ga0059261_0101 0.44 +0.3 94,991 + Ga0059261_0101 0.44 -0.0 94,992 - Ga0059261_0101 0.44 -0.0 94,992 - Ga0059261_0101 0.44 +0.4 95,207 + Ga0059261_0101 0.57 +0.4 95,207 + Ga0059261_0101 0.57 -0.2 95,207 + Ga0059261_0101 0.57 -1.3 95,208 - Ga0059261_0101 0.57 +0.3 95,208 - Ga0059261_0101 0.57 -1.0 95,229 - Ga0059261_0101 0.58 -1.0 95,255 + Ga0059261_0101 0.60 -1.4 95,256 - Ga0059261_0101 0.60 +0.1 95,386 + Ga0059261_0101 0.67 +0.5 95,387 - Ga0059261_0101 0.67 +1.7 95,435 + Ga0059261_0101 0.70 +1.0 95,436 - Ga0059261_0101 0.70 -0.2 95,647 + Ga0059261_0101 0.83 +0.7 95,647 + -0.3 95,647 + Ga0059261_0101 0.83 +0.1 95,647 + Ga0059261_0101 0.83 -0.8 95,647 + Ga0059261_0101 0.83 -0.4 95,647 + Ga0059261_0101 0.83 +0.3 95,647 + Ga0059261_0101 0.83 -0.3 95,647 + Ga0059261_0101 0.83 -0.0 95,647 + Ga0059261_0101 0.83 -0.7 95,648 - Ga0059261_0101 0.83 +0.4 95,648 - Ga0059261_0101 0.83 -0.2 95,648 - Ga0059261_0101 0.83 -0.5 95,648 - Ga0059261_0101 0.83 -0.5 95,649 + Ga0059261_0101 0.83 +0.2 95,649 + Ga0059261_0101 0.83 +0.3 95,649 + Ga0059261_0101 0.83 +1.2 95,649 + Ga0059261_0101 0.83 -0.3 95,649 + Ga0059261_0101 0.83 -1.3 95,649 + Ga0059261_0101 0.83 +1.0 95,649 + Ga0059261_0101 0.83 +0.5 95,650 - Ga0059261_0101 0.83 +0.3 95,650 - Ga0059261_0101 0.83 -0.6 95,791 + +0.2 95,791 + -1.1 95,791 + +0.6 95,791 + -0.6 95,792 - +1.1 95,792 - -0.1 95,792 - -0.8 95,792 - +0.4 95,792 - -0.4 95,792 - -0.5 95,792 - +1.1 95,945 + -0.1 95,945 + +1.1 95,945 + -1.1 95,945 + +0.3 95,945 + +0.5 95,946 - +0.3 95,947 + +0.6 95,947 + -0.0 95,947 + -0.3 95,947 + -0.3 95,947 + +0.4 95,947 + -0.1 95,947 + +0.4 95,948 - +1.1 95,948 - +0.4 95,948 - -0.6 95,948 - +0.7 95,948 - +0.2 95,948 - +0.6 95,948 - -0.2 95,985 + +0.2 95,985 + +1.2 95,985 + -0.3 95,985 + +2.3 95,985 + +0.2 95,986 - -0.2 95,986 - +0.1 95,986 - +0.1 96,002 + +1.1 96,002 + -0.3 96,002 + -0.5 96,002 + +0.6 96,003 - +0.0 96,235 - Ga0059261_0102 0.10 +0.1 96,606 - Ga0059261_0102 0.26 +0.3 96,653 + Ga0059261_0102 0.28 +0.7 96,654 - Ga0059261_0102 0.28 +0.3 96,654 - Ga0059261_0102 0.28 +0.7 96,656 + Ga0059261_0102 0.28 -0.3 96,656 + Ga0059261_0102 0.28 +0.5 96,656 + Ga0059261_0102 0.28 +0.0 96,657 - Ga0059261_0102 0.28 -0.5 96,657 - Ga0059261_0102 0.28 +0.5 96,657 - Ga0059261_0102 0.28 +0.2 96,657 - Ga0059261_0102 0.28 +0.3 96,857 + Ga0059261_0102 0.36 +0.7 96,857 + Ga0059261_0102 0.36 -1.1 96,858 - Ga0059261_0102 0.36 +0.7 96,858 - Ga0059261_0102 0.36 +1.4 96,858 - Ga0059261_0102 0.36 -1.4 96,858 - Ga0059261_0102 0.36 +0.3 96,950 + Ga0059261_0102 0.40 +0.3 96,951 - Ga0059261_0102 0.40 +0.5 96,951 - +0.2 96,951 - -0.8 96,951 - Ga0059261_0102 0.40 -0.5 96,951 - Ga0059261_0102 0.40 +1.0 97,132 - Ga0059261_0102 0.48 +0.5 97,132 - Ga0059261_0102 0.48 -0.2 97,132 - Ga0059261_0102 0.48 +0.7 97,169 + Ga0059261_0102 0.49 -0.8 97,169 + Ga0059261_0102 0.49 +0.7 97,169 + +1.7 97,169 + Ga0059261_0102 0.49 +1.1 97,170 - Ga0059261_0102 0.49 +1.2 97,170 - Ga0059261_0102 0.49 +0.2 97,170 - Ga0059261_0102 0.49 +0.2 97,170 - Ga0059261_0102 0.49 +0.7 97,170 - Ga0059261_0102 0.49 +1.1 97,344 - Ga0059261_0102 0.57 +0.1 97,344 - Ga0059261_0102 0.57 -2.6 97,455 - Ga0059261_0102 0.61 +0.2 97,455 - Ga0059261_0102 0.61 +1.4 97,456 + Ga0059261_0102 0.61 -0.7 97,580 + Ga0059261_0102 0.66 +0.5 97,580 + Ga0059261_0102 0.66 -0.1 97,580 + Ga0059261_0102 0.66 +1.1 97,580 + Ga0059261_0102 0.66 -0.1 97,581 - Ga0059261_0102 0.66 +1.2 97,724 + Ga0059261_0102 0.72 +0.7 97,928 + Ga0059261_0102 0.81 -0.3 97,928 + Ga0059261_0102 0.81 +0.1 97,963 + Ga0059261_0102 0.82 +0.3 97,965 + +0.7 97,970 - Ga0059261_0102 0.83 +0.6 98,095 + Ga0059261_0102 0.88 +0.8 98,096 - Ga0059261_0102 0.88 +0.2 98,096 - Ga0059261_0102 0.88 +0.5 98,195 + -0.8 98,308 - +0.9 98,308 - +0.1 98,308 - +0.3 98,381 + -0.1 98,381 + +0.7 98,382 - -0.3 98,382 - +0.9 98,382 - -0.6 98,382 - +0.3 98,445 + +0.2 98,445 + -0.7 98,513 + +1.0 98,514 - -0.8 98,536 + +1.0 98,536 + +1.2 98,536 + -0.3 98,536 + -0.3 98,537 - -0.5 98,537 - +1.3 98,537 - +0.5 98,537 - +0.8 98,871 + -0.3 98,871 + +0.6 98,871 + -0.4 98,939 + +0.3 99,105 + -0.6 99,106 - +0.7 99,130 + -1.1 99,130 + +0.3 99,130 + -0.3 99,131 - -0.1 99,131 - +0.2 99,131 - -0.7 99,156 + -0.5 99,156 + +0.3 99,157 - +0.3 99,157 - +0.4
Or see this region's nucleotide sequence