Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0050

Experiment: Gentamicin 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0049 and Ga0059261_0050 are separated by 17 nucleotidesGa0059261_0050 and Ga0059261_0051 are separated by 102 nucleotides Ga0059261_0049: Ga0059261_0049 - hypothetical protein, at 43,397 to 44,482 _0049 Ga0059261_0050: Ga0059261_0050 - Predicted membrane protein, at 44,500 to 44,880 _0050 Ga0059261_0051: Ga0059261_0051 - quinolinate synthetase (EC 2.5.1.72), at 44,983 to 45,981 _0051 Position (kb) 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 43.794 kb on + strand, within Ga0059261_0049at 43.794 kb on + strand, within Ga0059261_0049at 43.852 kb on + strand, within Ga0059261_0049at 43.852 kb on + strand, within Ga0059261_0049at 43.853 kb on - strand, within Ga0059261_0049at 43.853 kb on - strand, within Ga0059261_0049at 43.914 kb on + strand, within Ga0059261_0049at 43.914 kb on + strand, within Ga0059261_0049at 43.915 kb on - strand, within Ga0059261_0049at 43.917 kb on + strand, within Ga0059261_0049at 43.917 kb on + strand, within Ga0059261_0049at 43.917 kb on + strand, within Ga0059261_0049at 43.917 kb on + strand, within Ga0059261_0049at 43.917 kb on + strand, within Ga0059261_0049at 43.917 kb on + strand, within Ga0059261_0049at 43.917 kb on + strand, within Ga0059261_0049at 43.918 kb on - strand, within Ga0059261_0049at 43.918 kb on - strand, within Ga0059261_0049at 43.918 kb on - strand, within Ga0059261_0049at 43.918 kb on - strand, within Ga0059261_0049at 43.918 kb on - strand, within Ga0059261_0049at 43.918 kb on - strand, within Ga0059261_0049at 43.998 kb on + strand, within Ga0059261_0049at 43.998 kb on + strand, within Ga0059261_0049at 43.998 kb on + strand, within Ga0059261_0049at 43.999 kb on - strand, within Ga0059261_0049at 43.999 kb on - strand, within Ga0059261_0049at 44.083 kb on + strand, within Ga0059261_0049at 44.083 kb on + strand, within Ga0059261_0049at 44.084 kb on - strand, within Ga0059261_0049at 44.179 kb on + strand, within Ga0059261_0049at 44.179 kb on + strand, within Ga0059261_0049at 44.179 kb on + strand, within Ga0059261_0049at 44.179 kb on + strand, within Ga0059261_0049at 44.179 kb on + strand, within Ga0059261_0049at 44.179 kb on + strand, within Ga0059261_0049at 44.180 kb on - strand, within Ga0059261_0049at 44.180 kb on - strand, within Ga0059261_0049at 44.180 kb on - strand, within Ga0059261_0049at 44.180 kb on - strand, within Ga0059261_0049at 44.180 kb on - strand, within Ga0059261_0049at 44.181 kb on + strand, within Ga0059261_0049at 44.181 kb on + strand, within Ga0059261_0049at 44.181 kb on + strand, within Ga0059261_0049at 44.182 kb on - strand, within Ga0059261_0049at 44.182 kb on - strand, within Ga0059261_0049at 44.182 kb on - strand, within Ga0059261_0049at 44.182 kb on - strand, within Ga0059261_0049at 44.182 kb on - strand, within Ga0059261_0049at 44.182 kb on - strand, within Ga0059261_0049at 44.187 kb on + strand, within Ga0059261_0049at 44.188 kb on - strand, within Ga0059261_0049at 44.200 kb on + strand, within Ga0059261_0049at 44.214 kb on + strand, within Ga0059261_0049at 44.214 kb on + strand, within Ga0059261_0049at 44.214 kb on + strand, within Ga0059261_0049at 44.215 kb on - strand, within Ga0059261_0049at 44.215 kb on - strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.218 kb on + strand, within Ga0059261_0049at 44.219 kb on - strand, within Ga0059261_0049at 44.219 kb on - strandat 44.219 kb on - strand, within Ga0059261_0049at 44.219 kb on - strand, within Ga0059261_0049at 44.219 kb on - strand, within Ga0059261_0049at 44.219 kb on - strand, within Ga0059261_0049at 44.219 kb on - strand, within Ga0059261_0049at 44.219 kb on - strand, within Ga0059261_0049at 44.219 kb on - strand, within Ga0059261_0049at 44.219 kb on - strand, within Ga0059261_0049at 44.219 kb on - strand, within Ga0059261_0049at 44.220 kb on + strand, within Ga0059261_0049at 44.220 kb on + strand, within Ga0059261_0049at 44.220 kb on + strand, within Ga0059261_0049at 44.220 kb on + strand, within Ga0059261_0049at 44.221 kb on - strandat 44.221 kb on - strand, within Ga0059261_0049at 44.221 kb on - strand, within Ga0059261_0049at 44.221 kb on - strand, within Ga0059261_0049at 44.221 kb on - strand, within Ga0059261_0049at 44.373 kb on + strand, within Ga0059261_0049at 44.373 kb on + strand, within Ga0059261_0049at 44.374 kb on - strandat 44.410 kb on + strandat 44.410 kb on + strandat 44.410 kb on + strandat 44.410 kb on + strandat 44.410 kb on + strandat 44.410 kb on + strandat 44.410 kb on + strandat 44.410 kb on + strandat 44.411 kb on - strandat 44.411 kb on - strandat 44.411 kb on - strandat 44.411 kb on - strandat 44.411 kb on - strandat 44.411 kb on - strandat 44.501 kb on + strandat 44.501 kb on + strandat 44.502 kb on - strandat 44.558 kb on + strand, within Ga0059261_0050at 44.559 kb on - strand, within Ga0059261_0050at 44.559 kb on - strand, within Ga0059261_0050at 44.559 kb on - strand, within Ga0059261_0050at 44.643 kb on - strand, within Ga0059261_0050at 44.744 kb on + strand, within Ga0059261_0050at 44.745 kb on - strand, within Ga0059261_0050at 44.745 kb on - strand, within Ga0059261_0050at 44.745 kb on - strand, within Ga0059261_0050at 44.883 kb on + strandat 44.883 kb on + strandat 44.883 kb on + strandat 44.883 kb on + strandat 44.883 kb on + strandat 44.884 kb on - strandat 44.884 kb on - strandat 44.884 kb on - strandat 44.884 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.015 mg/ml
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43,794 + Ga0059261_0049 0.37 -0.5
43,794 + Ga0059261_0049 0.37 -0.3
43,852 + Ga0059261_0049 0.42 -0.2
43,852 + Ga0059261_0049 0.42 +1.0
43,853 - Ga0059261_0049 0.42 +0.2
43,853 - Ga0059261_0049 0.42 -3.6
43,914 + Ga0059261_0049 0.48 +1.7
43,914 + Ga0059261_0049 0.48 -0.5
43,915 - Ga0059261_0049 0.48 -0.5
43,917 + Ga0059261_0049 0.48 +0.2
43,917 + Ga0059261_0049 0.48 -0.1
43,917 + Ga0059261_0049 0.48 -0.5
43,917 + Ga0059261_0049 0.48 +0.1
43,917 + Ga0059261_0049 0.48 +0.0
43,917 + Ga0059261_0049 0.48 +0.3
43,917 + Ga0059261_0049 0.48 +0.1
43,918 - Ga0059261_0049 0.48 -0.3
43,918 - Ga0059261_0049 0.48 +1.5
43,918 - Ga0059261_0049 0.48 +0.2
43,918 - Ga0059261_0049 0.48 -0.3
43,918 - Ga0059261_0049 0.48 +0.1
43,918 - Ga0059261_0049 0.48 -0.0
43,998 + Ga0059261_0049 0.55 -0.4
43,998 + Ga0059261_0049 0.55 -0.1
43,998 + Ga0059261_0049 0.55 +0.8
43,999 - Ga0059261_0049 0.55 -0.8
43,999 - Ga0059261_0049 0.55 -0.5
44,083 + Ga0059261_0049 0.63 +1.0
44,083 + Ga0059261_0049 0.63 -0.1
44,084 - Ga0059261_0049 0.63 -0.3
44,179 + Ga0059261_0049 0.72 -0.1
44,179 + Ga0059261_0049 0.72 +0.4
44,179 + Ga0059261_0049 0.72 -0.5
44,179 + Ga0059261_0049 0.72 +0.1
44,179 + Ga0059261_0049 0.72 -0.8
44,179 + Ga0059261_0049 0.72 +0.6
44,180 - Ga0059261_0049 0.72 -0.9
44,180 - Ga0059261_0049 0.72 +0.7
44,180 - Ga0059261_0049 0.72 -0.4
44,180 - Ga0059261_0049 0.72 +0.7
44,180 - Ga0059261_0049 0.72 +0.0
44,181 + Ga0059261_0049 0.72 -0.0
44,181 + Ga0059261_0049 0.72 +2.2
44,181 + Ga0059261_0049 0.72 +0.5
44,182 - Ga0059261_0049 0.72 -0.1
44,182 - Ga0059261_0049 0.72 -0.3
44,182 - Ga0059261_0049 0.72 +0.3
44,182 - Ga0059261_0049 0.72 +0.4
44,182 - Ga0059261_0049 0.72 +0.7
44,182 - Ga0059261_0049 0.72 -0.6
44,187 + Ga0059261_0049 0.73 +0.3
44,188 - Ga0059261_0049 0.73 -0.1
44,200 + Ga0059261_0049 0.74 -0.2
44,214 + Ga0059261_0049 0.75 -0.4
44,214 + Ga0059261_0049 0.75 +0.2
44,214 + Ga0059261_0049 0.75 +0.1
44,215 - Ga0059261_0049 0.75 -0.7
44,215 - Ga0059261_0049 0.75 -0.3
44,218 + Ga0059261_0049 0.76 +0.3
44,218 + Ga0059261_0049 0.76 +1.1
44,218 + Ga0059261_0049 0.76 +0.4
44,218 + Ga0059261_0049 0.76 -0.2
44,218 + Ga0059261_0049 0.76 +0.4
44,218 + Ga0059261_0049 0.76 +0.4
44,218 + Ga0059261_0049 0.76 -0.7
44,218 + Ga0059261_0049 0.76 -0.2
44,218 + Ga0059261_0049 0.76 +0.5
44,218 + Ga0059261_0049 0.76 -1.0
44,218 + Ga0059261_0049 0.76 -0.6
44,218 + Ga0059261_0049 0.76 -0.2
44,218 + Ga0059261_0049 0.76 -0.8
44,218 + Ga0059261_0049 0.76 -1.3
44,218 + Ga0059261_0049 0.76 +1.4
44,218 + Ga0059261_0049 0.76 +0.4
44,218 + Ga0059261_0049 0.76 -0.6
44,219 - Ga0059261_0049 0.76 +0.5
44,219 - +2.7
44,219 - Ga0059261_0049 0.76 -0.5
44,219 - Ga0059261_0049 0.76 -0.0
44,219 - Ga0059261_0049 0.76 -0.0
44,219 - Ga0059261_0049 0.76 -0.2
44,219 - Ga0059261_0049 0.76 -0.4
44,219 - Ga0059261_0049 0.76 +0.7
44,219 - Ga0059261_0049 0.76 -0.8
44,219 - Ga0059261_0049 0.76 -0.1
44,219 - Ga0059261_0049 0.76 +1.1
44,220 + Ga0059261_0049 0.76 -0.1
44,220 + Ga0059261_0049 0.76 +0.8
44,220 + Ga0059261_0049 0.76 +0.8
44,220 + Ga0059261_0049 0.76 +0.4
44,221 - +0.7
44,221 - Ga0059261_0049 0.76 -0.0
44,221 - Ga0059261_0049 0.76 -1.0
44,221 - Ga0059261_0049 0.76 -0.3
44,221 - Ga0059261_0049 0.76 +0.0
44,373 + Ga0059261_0049 0.90 -0.0
44,373 + Ga0059261_0049 0.90 -0.1
44,374 - -0.4
44,410 + +0.0
44,410 + -0.6
44,410 + +0.3
44,410 + -0.0
44,410 + -0.8
44,410 + -0.0
44,410 + -1.3
44,410 + +0.2
44,411 - -0.9
44,411 - +0.6
44,411 - +0.1
44,411 - +0.4
44,411 - -0.3
44,411 - -0.6
44,501 + -0.3
44,501 + +0.4
44,502 - +0.7
44,558 + Ga0059261_0050 0.15 -0.2
44,559 - Ga0059261_0050 0.15 +0.2
44,559 - Ga0059261_0050 0.15 +0.6
44,559 - Ga0059261_0050 0.15 -0.2
44,643 - Ga0059261_0050 0.38 -0.3
44,744 + Ga0059261_0050 0.64 +0.7
44,745 - Ga0059261_0050 0.64 +0.6
44,745 - Ga0059261_0050 0.64 +0.4
44,745 - Ga0059261_0050 0.64 +1.0
44,883 + -0.4
44,883 + +0.0
44,883 + +0.1
44,883 + +0.2
44,883 + -0.1
44,884 - -0.1
44,884 - -0.9
44,884 - +0.3
44,884 - -0.3

Or see this region's nucleotide sequence