Strain Fitness in Caulobacter crescentus NA1000 around CCNA_R0037

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01450 and CCNA_R0036 are separated by 129 nucleotidesCCNA_R0036 and CCNA_R0037 are separated by 45 nucleotidesCCNA_R0037 and CCNA_01451 are separated by 172 nucleotidesCCNA_01451 and CCNA_01452 overlap by 32 nucleotides CCNA_01450: CCNA_01450 - single-stranded-DNA-specific exonuclease recJ, at 1,562,926 to 1,564,746 _01450 CCNA_R0036: CCNA_R0036 - tRNA-Glu, at 1,564,876 to 1,564,950 _R0036 CCNA_R0037: CCNA_R0037 - tRNA-Glu, at 1,564,996 to 1,565,070 _R0037 CCNA_01451: CCNA_01451 - cold shock protein cspD, at 1,565,243 to 1,565,833 _01451 CCNA_01452: CCNA_01452 - hypothetical protein, at 1,565,802 to 1,566,356 _01452 Position (kb) 1564 1565 1566Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1564.741 kb on + strandat 1564.763 kb on + strandat 1564.763 kb on + strandat 1564.774 kb on + strandat 1564.778 kb on + strandat 1564.779 kb on + strandat 1565.020 kb on + strand, within CCNA_R0037at 1565.045 kb on + strand, within CCNA_R0037at 1565.055 kb on + strand, within CCNA_R0037at 1565.151 kb on - strandat 1565.223 kb on + strandat 1565.228 kb on + strandat 1565.236 kb on - strandat 1565.236 kb on - strandat 1565.236 kb on - strandat 1565.324 kb on + strand, within CCNA_01451at 1565.329 kb on + strand, within CCNA_01451at 1565.330 kb on + strand, within CCNA_01451at 1565.330 kb on + strand, within CCNA_01451at 1565.338 kb on - strand, within CCNA_01451at 1565.355 kb on + strand, within CCNA_01451at 1565.355 kb on + strand, within CCNA_01451at 1565.355 kb on + strand, within CCNA_01451at 1565.355 kb on + strand, within CCNA_01451at 1565.360 kb on + strand, within CCNA_01451at 1565.363 kb on - strand, within CCNA_01451at 1565.363 kb on - strand, within CCNA_01451at 1565.378 kb on - strand, within CCNA_01451at 1565.434 kb on - strand, within CCNA_01451at 1565.468 kb on + strand, within CCNA_01451at 1565.511 kb on - strand, within CCNA_01451at 1565.533 kb on - strand, within CCNA_01451at 1565.604 kb on - strand, within CCNA_01451at 1565.610 kb on + strand, within CCNA_01451at 1565.635 kb on - strand, within CCNA_01451at 1565.662 kb on + strand, within CCNA_01451at 1565.663 kb on + strand, within CCNA_01451at 1565.663 kb on + strand, within CCNA_01451at 1565.663 kb on - strand, within CCNA_01451at 1565.664 kb on - strand, within CCNA_01451at 1565.698 kb on - strand, within CCNA_01451at 1565.698 kb on - strand, within CCNA_01451at 1565.765 kb on + strand, within CCNA_01451at 1565.765 kb on + strand, within CCNA_01451at 1565.787 kb on + strandat 1565.833 kb on + strandat 1565.845 kb on + strandat 1565.925 kb on + strand, within CCNA_01452at 1565.934 kb on + strand, within CCNA_01452at 1565.935 kb on + strand, within CCNA_01452at 1565.943 kb on - strand, within CCNA_01452at 1565.962 kb on - strand, within CCNA_01452at 1565.981 kb on + strand, within CCNA_01452at 1566.023 kb on + strand, within CCNA_01452at 1566.031 kb on - strand, within CCNA_01452at 1566.056 kb on + strand, within CCNA_01452

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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1,564,741 + -0.7
1,564,763 + +1.0
1,564,763 + -0.3
1,564,774 + +0.2
1,564,778 + +1.6
1,564,779 + +1.6
1,565,020 + CCNA_R0037 0.32 +2.8
1,565,045 + CCNA_R0037 0.65 +3.4
1,565,055 + CCNA_R0037 0.79 +2.8
1,565,151 - +0.2
1,565,223 + -0.1
1,565,228 + -0.7
1,565,236 - +0.2
1,565,236 - -0.1
1,565,236 - +1.2
1,565,324 + CCNA_01451 0.14 +0.1
1,565,329 + CCNA_01451 0.15 -2.0
1,565,330 + CCNA_01451 0.15 +0.9
1,565,330 + CCNA_01451 0.15 +0.3
1,565,338 - CCNA_01451 0.16 +0.2
1,565,355 + CCNA_01451 0.19 -0.4
1,565,355 + CCNA_01451 0.19 -1.7
1,565,355 + CCNA_01451 0.19 +0.5
1,565,355 + CCNA_01451 0.19 +0.2
1,565,360 + CCNA_01451 0.20 -0.4
1,565,363 - CCNA_01451 0.20 +1.9
1,565,363 - CCNA_01451 0.20 -0.5
1,565,378 - CCNA_01451 0.23 +0.7
1,565,434 - CCNA_01451 0.32 -0.3
1,565,468 + CCNA_01451 0.38 -1.2
1,565,511 - CCNA_01451 0.45 -0.8
1,565,533 - CCNA_01451 0.49 -0.5
1,565,604 - CCNA_01451 0.61 +2.5
1,565,610 + CCNA_01451 0.62 -0.1
1,565,635 - CCNA_01451 0.66 +0.9
1,565,662 + CCNA_01451 0.71 +1.5
1,565,663 + CCNA_01451 0.71 +0.8
1,565,663 + CCNA_01451 0.71 +0.1
1,565,663 - CCNA_01451 0.71 -0.3
1,565,664 - CCNA_01451 0.71 -0.4
1,565,698 - CCNA_01451 0.77 +1.9
1,565,698 - CCNA_01451 0.77 -0.1
1,565,765 + CCNA_01451 0.88 -0.8
1,565,765 + CCNA_01451 0.88 -1.1
1,565,787 + +1.0
1,565,833 + +0.7
1,565,845 + -0.9
1,565,925 + CCNA_01452 0.22 +0.9
1,565,934 + CCNA_01452 0.24 +1.9
1,565,935 + CCNA_01452 0.24 +0.7
1,565,943 - CCNA_01452 0.25 -0.5
1,565,962 - CCNA_01452 0.29 -0.5
1,565,981 + CCNA_01452 0.32 +1.0
1,566,023 + CCNA_01452 0.40 +0.8
1,566,031 - CCNA_01452 0.41 -0.7
1,566,056 + CCNA_01452 0.46 -0.2

Or see this region's nucleotide sequence