Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03862 and CCNA_03863 are separated by 6 nucleotides CCNA_03863 and CCNA_03864 are separated by 253 nucleotides CCNA_03864 and CCNA_03865 are separated by 139 nucleotides
CCNA_03862: CCNA_03862 - thiamine monophosphate synthase TenI, at 4,024,198 to 4,024,818
_03862
CCNA_03863: CCNA_03863 - hypothetical protein, at 4,024,825 to 4,025,235
_03863
CCNA_03864: CCNA_03864 - hypothetical protein, at 4,025,489 to 4,026,016
_03864
CCNA_03865: CCNA_03865 - leucyl-tRNA synthetase, at 4,026,156 to 4,028,741
_03865
Position (kb)
4025
4026
4027 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4024.806 kb on - strand at 4024.978 kb on - strand, within CCNA_03863 at 4025.150 kb on + strand, within CCNA_03863 at 4025.150 kb on + strand, within CCNA_03863 at 4025.150 kb on + strand, within CCNA_03863 at 4025.158 kb on - strand, within CCNA_03863 at 4025.158 kb on - strand, within CCNA_03863 at 4025.158 kb on - strand, within CCNA_03863 at 4025.204 kb on - strand at 4025.269 kb on - strand at 4025.281 kb on - strand at 4025.303 kb on + strand at 4025.311 kb on - strand at 4025.428 kb on + strand at 4025.435 kb on - strand at 4025.441 kb on - strand at 4025.494 kb on - strand at 4025.499 kb on + strand at 4025.501 kb on + strand at 4025.505 kb on - strand at 4025.507 kb on - strand at 4025.507 kb on - strand at 4025.507 kb on - strand at 4025.509 kb on - strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.525 kb on + strand at 4025.528 kb on - strand at 4025.607 kb on - strand, within CCNA_03864 at 4025.620 kb on + strand, within CCNA_03864 at 4025.687 kb on + strand, within CCNA_03864 at 4025.698 kb on + strand, within CCNA_03864 at 4025.723 kb on + strand, within CCNA_03864 at 4025.740 kb on + strand, within CCNA_03864 at 4025.747 kb on + strand, within CCNA_03864 at 4025.752 kb on + strand, within CCNA_03864 at 4025.755 kb on - strand, within CCNA_03864 at 4025.755 kb on - strand, within CCNA_03864 at 4025.765 kb on - strand, within CCNA_03864 at 4025.809 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.830 kb on + strand, within CCNA_03864 at 4025.832 kb on - strand, within CCNA_03864 at 4025.832 kb on - strand, within CCNA_03864 at 4025.832 kb on - strand, within CCNA_03864 at 4025.832 kb on - strand, within CCNA_03864 at 4025.832 kb on - strand at 4025.832 kb on - strand, within CCNA_03864 at 4025.837 kb on + strand, within CCNA_03864 at 4025.837 kb on + strand, within CCNA_03864 at 4025.845 kb on - strand, within CCNA_03864 at 4025.851 kb on - strand, within CCNA_03864 at 4025.865 kb on + strand, within CCNA_03864 at 4025.871 kb on + strand, within CCNA_03864 at 4025.886 kb on + strand, within CCNA_03864 at 4025.895 kb on - strand, within CCNA_03864 at 4025.896 kb on + strand, within CCNA_03864 at 4025.896 kb on + strand, within CCNA_03864 at 4025.896 kb on + strand, within CCNA_03864 at 4025.896 kb on + strand, within CCNA_03864 at 4025.896 kb on + strand, within CCNA_03864 at 4025.904 kb on - strand, within CCNA_03864 at 4025.904 kb on - strand, within CCNA_03864 at 4025.904 kb on - strand, within CCNA_03864 at 4025.904 kb on - strand, within CCNA_03864 at 4025.904 kb on - strand, within CCNA_03864 at 4025.939 kb on + strand, within CCNA_03864 at 4025.947 kb on - strand, within CCNA_03864 at 4025.960 kb on - strand, within CCNA_03864 at 4025.996 kb on - strand at 4026.011 kb on + strand at 4026.032 kb on - strand at 4026.084 kb on - strand at 4026.084 kb on - strand at 4026.084 kb on - strand at 4026.094 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 4,024,806 - +2.0 4,024,978 - CCNA_03863 0.37 +2.9 4,025,150 + CCNA_03863 0.79 -1.2 4,025,150 + CCNA_03863 0.79 -0.4 4,025,150 + CCNA_03863 0.79 +0.8 4,025,158 - CCNA_03863 0.81 +2.8 4,025,158 - CCNA_03863 0.81 +2.4 4,025,158 - CCNA_03863 0.81 +2.5 4,025,204 - +2.5 4,025,269 - +1.8 4,025,281 - +2.0 4,025,303 + -2.2 4,025,311 - +2.3 4,025,428 + +0.5 4,025,435 - -0.7 4,025,441 - -0.7 4,025,494 - -1.4 4,025,499 + -0.5 4,025,501 + -1.3 4,025,505 - -0.4 4,025,507 - +2.1 4,025,507 - +0.4 4,025,507 - -3.5 4,025,509 - -2.6 4,025,520 + +0.5 4,025,520 + -2.1 4,025,520 + -2.6 4,025,520 + -0.7 4,025,520 + -1.8 4,025,520 + -0.9 4,025,520 + -2.4 4,025,520 + -1.9 4,025,520 + -0.8 4,025,520 + -1.5 4,025,525 + -0.2 4,025,528 - -1.6 4,025,607 - CCNA_03864 0.22 +0.5 4,025,620 + CCNA_03864 0.25 -1.7 4,025,687 + CCNA_03864 0.38 -2.6 4,025,698 + CCNA_03864 0.40 -2.9 4,025,723 + CCNA_03864 0.44 -2.1 4,025,740 + CCNA_03864 0.48 -2.4 4,025,747 + CCNA_03864 0.49 -1.8 4,025,752 + CCNA_03864 0.50 -1.9 4,025,755 - CCNA_03864 0.50 -0.9 4,025,755 - CCNA_03864 0.50 +1.1 4,025,765 - CCNA_03864 0.52 +1.1 4,025,809 + CCNA_03864 0.61 -3.5 4,025,824 + CCNA_03864 0.63 -1.6 4,025,824 + CCNA_03864 0.63 -1.3 4,025,824 + CCNA_03864 0.63 -3.2 4,025,824 + CCNA_03864 0.63 -2.1 4,025,824 + CCNA_03864 0.63 -1.8 4,025,824 + CCNA_03864 0.63 -2.0 4,025,824 + CCNA_03864 0.63 -3.1 4,025,824 + CCNA_03864 0.63 +0.8 4,025,824 + CCNA_03864 0.63 -1.4 4,025,824 + CCNA_03864 0.63 -1.8 4,025,824 + CCNA_03864 0.63 -1.8 4,025,830 + CCNA_03864 0.65 -0.8 4,025,832 - CCNA_03864 0.65 -1.2 4,025,832 - CCNA_03864 0.65 -2.3 4,025,832 - CCNA_03864 0.65 -1.4 4,025,832 - CCNA_03864 0.65 +0.1 4,025,832 - +1.1 4,025,832 - CCNA_03864 0.65 -0.9 4,025,837 + CCNA_03864 0.66 -2.2 4,025,837 + CCNA_03864 0.66 -0.9 4,025,845 - CCNA_03864 0.67 +0.5 4,025,851 - CCNA_03864 0.69 -1.2 4,025,865 + CCNA_03864 0.71 -2.1 4,025,871 + CCNA_03864 0.72 -0.2 4,025,886 + CCNA_03864 0.75 -1.6 4,025,895 - CCNA_03864 0.77 -1.8 4,025,896 + CCNA_03864 0.77 -2.4 4,025,896 + CCNA_03864 0.77 -1.4 4,025,896 + CCNA_03864 0.77 -1.7 4,025,896 + CCNA_03864 0.77 -1.5 4,025,896 + CCNA_03864 0.77 -3.3 4,025,904 - CCNA_03864 0.79 -1.7 4,025,904 - CCNA_03864 0.79 -1.7 4,025,904 - CCNA_03864 0.79 -1.4 4,025,904 - CCNA_03864 0.79 -2.1 4,025,904 - CCNA_03864 0.79 -3.6 4,025,939 + CCNA_03864 0.85 -0.3 4,025,947 - CCNA_03864 0.87 -0.5 4,025,960 - CCNA_03864 0.89 -2.0 4,025,996 - -1.9 4,026,011 + +2.0 4,026,032 - -0.5 4,026,084 - -0.5 4,026,084 - -1.4 4,026,084 - +0.5 4,026,094 + +1.2
Or see this region's nucleotide sequence