Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03555 and CCNA_03556 are separated by 9 nucleotides CCNA_03556 and CCNA_03557 are separated by 109 nucleotides CCNA_03557 and CCNA_03558 are separated by 207 nucleotides CCNA_03558 and CCNA_03559 overlap by 1 nucleotides CCNA_03559 and CCNA_03560 overlap by 1 nucleotides
CCNA_03555: CCNA_03555 - esterase lipase family protein, at 3,711,896 to 3,712,645
_03555
CCNA_03556: CCNA_03556 - multidrug efflux system protein, at 3,712,655 to 3,712,975
_03556
CCNA_03557: CCNA_03557 - hypothetical protein, at 3,713,085 to 3,713,810
_03557
CCNA_03558: CCNA_03558 - ATP synthase epsilon chain, at 3,714,018 to 3,714,278
_03558
CCNA_03559: CCNA_03559 - hypothetical protein, at 3,714,278 to 3,714,529
_03559
CCNA_03560: CCNA_03560 - ATP synthase beta chain, at 3,714,529 to 3,716,148
_03560
Position (kb)
3713
3714 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3712.117 kb on + strand, within CCNA_03555 at 3712.196 kb on + strand, within CCNA_03555 at 3712.215 kb on - strand, within CCNA_03555 at 3712.218 kb on + strand, within CCNA_03555 at 3712.226 kb on - strand, within CCNA_03555 at 3712.230 kb on - strand, within CCNA_03555 at 3712.262 kb on - strand, within CCNA_03555 at 3712.262 kb on - strand, within CCNA_03555 at 3712.262 kb on - strand, within CCNA_03555 at 3712.264 kb on + strand, within CCNA_03555 at 3712.266 kb on + strand, within CCNA_03555 at 3712.272 kb on - strand, within CCNA_03555 at 3712.272 kb on - strand, within CCNA_03555 at 3712.283 kb on + strand, within CCNA_03555 at 3712.284 kb on - strand, within CCNA_03555 at 3712.293 kb on + strand, within CCNA_03555 at 3712.296 kb on - strand, within CCNA_03555 at 3712.299 kb on - strand, within CCNA_03555 at 3712.301 kb on - strand, within CCNA_03555 at 3712.309 kb on + strand, within CCNA_03555 at 3712.314 kb on + strand, within CCNA_03555 at 3712.339 kb on + strand, within CCNA_03555 at 3712.360 kb on + strand, within CCNA_03555 at 3712.394 kb on + strand, within CCNA_03555 at 3712.402 kb on - strand, within CCNA_03555 at 3712.444 kb on + strand, within CCNA_03555 at 3712.457 kb on - strand, within CCNA_03555 at 3712.457 kb on - strand, within CCNA_03555 at 3712.541 kb on - strand, within CCNA_03555 at 3712.542 kb on - strand, within CCNA_03555 at 3712.604 kb on + strand at 3712.605 kb on + strand at 3712.613 kb on - strand at 3712.646 kb on + strand at 3712.702 kb on + strand, within CCNA_03556 at 3712.705 kb on - strand, within CCNA_03556 at 3712.795 kb on - strand, within CCNA_03556 at 3712.828 kb on + strand, within CCNA_03556 at 3712.853 kb on + strand, within CCNA_03556 at 3712.913 kb on + strand, within CCNA_03556 at 3712.913 kb on + strand, within CCNA_03556 at 3712.926 kb on + strand, within CCNA_03556 at 3712.934 kb on - strand, within CCNA_03556 at 3712.934 kb on - strand, within CCNA_03556 at 3713.045 kb on + strand at 3713.053 kb on - strand at 3713.072 kb on + strand at 3713.106 kb on - strand at 3713.111 kb on - strand at 3713.165 kb on - strand, within CCNA_03557 at 3713.244 kb on + strand, within CCNA_03557 at 3713.293 kb on + strand, within CCNA_03557 at 3713.316 kb on - strand, within CCNA_03557 at 3713.338 kb on - strand, within CCNA_03557 at 3713.362 kb on + strand, within CCNA_03557 at 3713.370 kb on - strand, within CCNA_03557 at 3713.389 kb on - strand, within CCNA_03557 at 3713.391 kb on + strand, within CCNA_03557 at 3713.391 kb on + strand, within CCNA_03557 at 3713.399 kb on - strand, within CCNA_03557 at 3713.461 kb on + strand, within CCNA_03557 at 3713.469 kb on - strand, within CCNA_03557 at 3713.514 kb on + strand, within CCNA_03557 at 3713.546 kb on + strand, within CCNA_03557 at 3713.547 kb on - strand, within CCNA_03557 at 3713.554 kb on - strand, within CCNA_03557 at 3713.554 kb on - strand, within CCNA_03557 at 3713.554 kb on - strand, within CCNA_03557 at 3713.554 kb on - strand, within CCNA_03557 at 3713.578 kb on + strand, within CCNA_03557 at 3713.586 kb on - strand, within CCNA_03557 at 3713.602 kb on + strand, within CCNA_03557 at 3713.632 kb on + strand, within CCNA_03557 at 3713.670 kb on - strand, within CCNA_03557 at 3713.677 kb on + strand, within CCNA_03557 at 3713.719 kb on + strand, within CCNA_03557 at 3713.746 kb on - strand at 3713.782 kb on + strand at 3713.795 kb on - strand at 3713.800 kb on - strand at 3713.874 kb on - strand at 3713.991 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 3,712,117 + CCNA_03555 0.29 -0.8 3,712,196 + CCNA_03555 0.40 +1.2 3,712,215 - CCNA_03555 0.43 +0.6 3,712,218 + CCNA_03555 0.43 +1.0 3,712,226 - CCNA_03555 0.44 -0.5 3,712,230 - CCNA_03555 0.45 -0.3 3,712,262 - CCNA_03555 0.49 -0.2 3,712,262 - CCNA_03555 0.49 +1.7 3,712,262 - CCNA_03555 0.49 -0.1 3,712,264 + CCNA_03555 0.49 +1.2 3,712,266 + CCNA_03555 0.49 +1.2 3,712,272 - CCNA_03555 0.50 +0.9 3,712,272 - CCNA_03555 0.50 -0.4 3,712,283 + CCNA_03555 0.52 +0.7 3,712,284 - CCNA_03555 0.52 +0.1 3,712,293 + CCNA_03555 0.53 +0.8 3,712,296 - CCNA_03555 0.53 +0.5 3,712,299 - CCNA_03555 0.54 -0.4 3,712,301 - CCNA_03555 0.54 -0.5 3,712,309 + CCNA_03555 0.55 +1.4 3,712,314 + CCNA_03555 0.56 +0.9 3,712,339 + CCNA_03555 0.59 +0.5 3,712,360 + CCNA_03555 0.62 +1.0 3,712,394 + CCNA_03555 0.66 +1.5 3,712,402 - CCNA_03555 0.67 -0.2 3,712,444 + CCNA_03555 0.73 +0.9 3,712,457 - CCNA_03555 0.75 +0.5 3,712,457 - CCNA_03555 0.75 -1.1 3,712,541 - CCNA_03555 0.86 +0.2 3,712,542 - CCNA_03555 0.86 +0.5 3,712,604 + +2.4 3,712,605 + +1.5 3,712,613 - +2.2 3,712,646 + +3.2 3,712,702 + CCNA_03556 0.15 +0.6 3,712,705 - CCNA_03556 0.16 +0.9 3,712,795 - CCNA_03556 0.44 +1.2 3,712,828 + CCNA_03556 0.54 -0.8 3,712,853 + CCNA_03556 0.62 +1.1 3,712,913 + CCNA_03556 0.80 +0.3 3,712,913 + CCNA_03556 0.80 +0.3 3,712,926 + CCNA_03556 0.84 +0.2 3,712,934 - CCNA_03556 0.87 +1.7 3,712,934 - CCNA_03556 0.87 +0.5 3,713,045 + -0.7 3,713,053 - +2.7 3,713,072 + +1.2 3,713,106 - +2.7 3,713,111 - +3.2 3,713,165 - CCNA_03557 0.11 +3.0 3,713,244 + CCNA_03557 0.22 -0.7 3,713,293 + CCNA_03557 0.29 +1.5 3,713,316 - CCNA_03557 0.32 +2.7 3,713,338 - CCNA_03557 0.35 +2.7 3,713,362 + CCNA_03557 0.38 +0.2 3,713,370 - CCNA_03557 0.39 +2.4 3,713,389 - CCNA_03557 0.42 +2.9 3,713,391 + CCNA_03557 0.42 -0.1 3,713,391 + CCNA_03557 0.42 -0.2 3,713,399 - CCNA_03557 0.43 +2.3 3,713,461 + CCNA_03557 0.52 +1.2 3,713,469 - CCNA_03557 0.53 +2.3 3,713,514 + CCNA_03557 0.59 -1.2 3,713,546 + CCNA_03557 0.63 +1.2 3,713,547 - CCNA_03557 0.64 +2.3 3,713,554 - CCNA_03557 0.65 +1.9 3,713,554 - CCNA_03557 0.65 +2.2 3,713,554 - CCNA_03557 0.65 +2.0 3,713,554 - CCNA_03557 0.65 +2.4 3,713,578 + CCNA_03557 0.68 -1.6 3,713,586 - CCNA_03557 0.69 +2.1 3,713,602 + CCNA_03557 0.71 +0.0 3,713,632 + CCNA_03557 0.75 +0.6 3,713,670 - CCNA_03557 0.81 +2.4 3,713,677 + CCNA_03557 0.82 -0.3 3,713,719 + CCNA_03557 0.87 +1.5 3,713,746 - +2.5 3,713,782 + -1.0 3,713,795 - +2.1 3,713,800 - +1.6 3,713,874 - +1.9 3,713,991 - +2.9
Or see this region's nucleotide sequence