Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03440

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Benzalkonium Chloride 0.0001 mg/ml
3,602,503	-		CCNA_03437	0.43	+0.3
3,602,548	+		CCNA_03437	0.52	+1.1
3,602,556	-		CCNA_03437	0.54	-0.7
3,602,595	+		CCNA_03437	0.61	-0.9
3,602,604	+		CCNA_03437	0.63	+0.3
3,602,604	+		CCNA_03437	0.63	-1.4
3,602,604	+		CCNA_03437	0.63	+2.3
3,602,612	-		CCNA_03437	0.65	+0.5
3,602,612	-		CCNA_03437	0.65	-0.1
3,602,612	-		CCNA_03437	0.65	+0.5
3,602,612	-				+2.3
3,602,616	+		CCNA_03437	0.66	-0.9
3,602,639	-		CCNA_03437	0.70	+0.7
3,602,665	+		CCNA_03437	0.76	-0.9
3,602,672	-		CCNA_03437	0.77	+0.3
3,602,672	-		CCNA_03437	0.77	+0.5
3,602,672	-		CCNA_03437	0.77	+1.3
3,602,709	-		CCNA_03437	0.84	+0.5
3,602,711	+		CCNA_03437	0.85	-2.0
3,602,748	+				-0.4
3,602,754	+				+0.7
3,602,756	-				+1.3
3,602,759	+				+1.3
3,602,759	+				+1.3
3,602,759	+				+0.3
3,602,767	-				+1.0
3,602,767	-				-0.4
3,602,777	+				-2.8
3,602,848	+				-0.1
3,602,856	-				-1.3
3,602,861	-				-0.7
3,602,864	+				-0.9
3,602,872	-		CCNA_03438	0.12	+1.0
3,602,875	-		CCNA_03438	0.13	-0.1
3,602,875	-		CCNA_03438	0.13	+0.1
3,602,886	+		CCNA_03438	0.16	-1.6
3,602,892	+		CCNA_03438	0.18	-1.0
3,602,900	-		CCNA_03438	0.20	+0.8
3,602,900	-		CCNA_03438	0.20	+0.3
3,602,920	-		CCNA_03438	0.26	+0.0
3,602,930	-		CCNA_03438	0.29	-1.1
3,602,930	-		CCNA_03438	0.29	+0.9
3,603,015	+		CCNA_03438	0.55	-0.1
3,603,044	-		CCNA_03438	0.64	+0.2
3,603,095	+		CCNA_03438	0.79	-1.1
3,603,122	+		CCNA_03438	0.88	-0.7
3,603,122	+		CCNA_03438	0.88	-0.7
3,603,123	+		CCNA_03438	0.88	-0.7
3,603,143	+				-1.5
3,603,143	+				-0.9
3,603,178	+				-1.1
3,603,216	+				-0.3
3,603,216	+				+0.7
3,603,224	+				-1.3
3,603,225	-				+0.8
3,603,243	-				-0.7
3,603,290	-		CCNA_03439	0.21	-0.6
3,603,315	+		CCNA_03439	0.40	-1.1
3,603,327	-		CCNA_03439	0.50	+1.3
3,603,350	-		CCNA_03439	0.68	+0.1
3,603,355	+		CCNA_03439	0.72	-2.1
3,603,382	-				+0.3
3,603,392	+				+0.3
3,603,415	+				-0.5
3,603,423	-				+0.7
3,603,423	-				-0.5
3,603,435	+				+0.5
3,603,482	+				-1.3
3,603,494	+				-1.6
3,603,499	+				-1.1
3,603,500	-				-1.2
3,603,507	-				-1.9
3,603,630	+		CCNA_03440	0.13	-0.5
3,603,638	-		CCNA_03440	0.14	-0.9
3,603,638	-		CCNA_03440	0.14	-0.3
3,603,661	+		CCNA_03440	0.17	+1.3
3,603,692	-		CCNA_03440	0.20	+0.4
3,603,701	+		CCNA_03440	0.21	-0.5
3,603,711	+		CCNA_03440	0.22	-1.1
3,603,807	+		CCNA_03440	0.31	+0.3
3,603,815	-		CCNA_03440	0.32	-1.8
3,603,842	-		CCNA_03440	0.35	+0.3
3,603,862	-		CCNA_03440	0.37	+1.3
3,603,862	-		CCNA_03440	0.37	+0.3
3,603,872	-		CCNA_03440	0.38	-0.7
3,603,945	-		CCNA_03440	0.45	-2.3
3,603,945	-		CCNA_03440	0.45	+0.7
3,603,955	+		CCNA_03440	0.46	+0.3
3,603,963	-		CCNA_03440	0.47	-0.3
3,604,022	+		CCNA_03440	0.53	+0.5
3,604,062	-		CCNA_03440	0.57	-1.7
3,604,119	+		CCNA_03440	0.63	+1.3
3,604,138	+		CCNA_03440	0.65	-0.9
3,604,146	-		CCNA_03440	0.65	+0.3
3,604,162	+		CCNA_03440	0.67	-1.2
3,604,243	+		CCNA_03440	0.75	+3.3
3,604,243	+		CCNA_03440	0.75	+0.1
3,604,243	+		CCNA_03440	0.75	-0.3
3,604,248	+		CCNA_03440	0.76	-1.6
3,604,251	-		CCNA_03440	0.76	+0.7
3,604,251	-		CCNA_03440	0.76	-0.7
3,604,251	-		CCNA_03440	0.76	-0.1
3,604,251	-		CCNA_03440	0.76	-2.2
3,604,273	+		CCNA_03440	0.78	-0.9
3,604,286	-		CCNA_03440	0.80	-0.7
3,604,299	-		CCNA_03440	0.81	-0.2
3,604,340	+		CCNA_03440	0.85	-0.5
3,604,348	-		CCNA_03440	0.86	-1.8
3,604,360	-		CCNA_03440	0.87	-1.2
3,604,369	-		CCNA_03440	0.88	+0.1
3,604,371	+		CCNA_03440	0.88	-1.1
3,604,377	-		CCNA_03440	0.89	-0.1
3,604,393	+				-0.1
3,604,393	+				+2.3
3,604,393	+				-1.2
3,604,401	-				-1.3
3,604,401	-				+0.3
3,604,410	+				+0.3
3,604,415	+				+0.7
3,604,415	+				-0.1
3,604,418	-				+0.9
3,604,424	-				+0.3
3,604,435	+				+0.8
3,604,435	+				+1.8
3,604,435	+				+2.3
3,604,441	+				-0.5
3,604,443	-				-1.3
3,604,477	-				-0.5
3,604,477	-				+1.3
3,604,477	-				+0.9
3,605,319	+				-1.2
3,605,383	+		CCNA_03443	0.16	-1.6
3,605,391	-		CCNA_03443	0.18	+0.2
3,605,413	+		CCNA_03443	0.22	+1.3
3,605,415	+		CCNA_03443	0.23	+0.2
3,605,423	-		CCNA_03443	0.24	+0.1
3,605,425	-		CCNA_03443	0.25	-0.3
3,605,427	+				+2.3
3,605,427	+		CCNA_03443	0.25	+0.7
3,605,427	+				+0.7
3,605,427	+		CCNA_03443	0.25	+1.3
3,605,430	-		CCNA_03443	0.26	-1.4
3,605,435	-		CCNA_03443	0.27	-0.8
3,605,435	-		CCNA_03443	0.27	-1.1
3,605,435	-		CCNA_03443	0.27	-0.9
3,605,437	-		CCNA_03443	0.27	+1.3
3,605,456	-		CCNA_03443	0.31	+2.9
3,605,457	-		CCNA_03443	0.31	+0.9
3,605,457	-		CCNA_03443	0.31	-0.9
3,605,465	+		CCNA_03443	0.33	-3.0
3,605,465	+		CCNA_03443	0.33	-1.1