Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03012

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Benzalkonium Chloride 0.0001 mg/ml
3,164,419	+		CCNA_03010	0.84	+0.1
3,164,470	+				+0.2
3,164,478	+				+0.6
3,164,492	+				+2.6
3,164,492	+				-0.3
3,164,500	-				+0.4
3,164,500	-				+2.6
3,164,528	-				+1.7
3,164,622	-				-0.3
3,164,627	-		CCNA_03011	0.10	+0.5
3,164,631	+		CCNA_03011	0.11	+0.8
3,164,631	+		CCNA_03011	0.11	+0.5
3,164,631	+		CCNA_03011	0.11	+1.0
3,164,636	+		CCNA_03011	0.12	+2.6
3,164,646	+		CCNA_03011	0.14	+0.1
3,164,652	+				+1.6
3,164,690	+		CCNA_03011	0.22	+1.0
3,164,698	-		CCNA_03011	0.24	+1.3
3,164,707	+		CCNA_03011	0.26	+0.2
3,164,707	+		CCNA_03011	0.26	+0.1
3,164,707	+		CCNA_03011	0.26	-0.6
3,164,707	+		CCNA_03011	0.26	+0.3
3,164,722	+		CCNA_03011	0.29	+2.1
3,164,736	-		CCNA_03011	0.31	+0.2
3,164,744	+		CCNA_03011	0.33	-1.9
3,164,750	+		CCNA_03011	0.34	-1.4
3,164,758	+		CCNA_03011	0.36	-1.5
3,164,786	+		CCNA_03011	0.41	-0.4
3,164,815	-		CCNA_03011	0.47	-0.0
3,164,847	+		CCNA_03011	0.53	+1.1
3,164,859	+		CCNA_03011	0.55	+2.6
3,164,866	-		CCNA_03011	0.57	-0.0
3,164,875	+		CCNA_03011	0.59	-1.4
3,164,918	+		CCNA_03011	0.67	+2.0
3,164,918	+		CCNA_03011	0.67	-1.3
3,164,918	+		CCNA_03011	0.67	+0.6
3,164,918	+		CCNA_03011	0.67	-0.9
3,164,918	+		CCNA_03011	0.67	-0.1
3,164,918	+		CCNA_03011	0.67	+0.4
3,164,918	+		CCNA_03011	0.67	+0.6
3,164,918	+		CCNA_03011	0.67	-0.4
3,164,918	+		CCNA_03011	0.67	-0.9
3,164,918	+		CCNA_03011	0.67	+0.2
3,164,918	+		CCNA_03011	0.67	-1.1
3,164,926	-		CCNA_03011	0.69	+1.2
3,164,926	-		CCNA_03011	0.69	-1.1
3,164,926	-		CCNA_03011	0.69	+0.8
3,164,926	-		CCNA_03011	0.69	-0.4
3,164,926	-		CCNA_03011	0.69	-0.4
3,164,926	-		CCNA_03011	0.69	-0.4
3,164,926	-		CCNA_03011	0.69	-0.6
3,164,926	-		CCNA_03011	0.69	+0.2
3,164,926	-		CCNA_03011	0.69	+0.2
3,164,926	-		CCNA_03011	0.69	+1.0
3,164,926	-		CCNA_03011	0.69	-1.8
3,164,926	-		CCNA_03011	0.69	+1.2
3,164,926	-		CCNA_03011	0.69	-1.4
3,164,945	+		CCNA_03011	0.72	+1.6
3,164,945	+		CCNA_03011	0.72	+0.2
3,164,945	+		CCNA_03011	0.72	+0.6
3,164,945	+		CCNA_03011	0.72	+1.0
3,164,953	-		CCNA_03011	0.74	+0.6
3,164,955	-		CCNA_03011	0.74	-1.1
3,164,972	+		CCNA_03011	0.78	-0.0
3,164,980	-		CCNA_03011	0.79	-0.7
3,164,985	-		CCNA_03011	0.80	-0.9
3,164,985	-		CCNA_03011	0.80	-1.4
3,165,017	-		CCNA_03011	0.86	-1.6
3,165,029	+		CCNA_03011	0.89	+2.6
3,165,039	+				+0.9
3,165,039	+				+1.5
3,165,045	+				-0.4
3,165,045	+				-0.8
3,165,053	-				-1.0
3,165,053	-				-1.1
3,165,053	-				-1.4
3,165,057	-				-1.8
3,165,077	+				-2.4
3,165,104	-				+0.6
3,165,104	-				-0.9
3,165,126	-				+0.6
3,165,126	-				+0.6
3,165,127	-				+0.6
3,165,142	-				+1.6
3,165,145	+				-0.3
3,165,221	+				+0.2
3,165,221	+				+0.0
3,165,221	+				+0.4
3,165,229	-				+0.5
3,165,229	-				-0.5
3,165,267	+				+2.4
3,165,275	-				+1.0
3,165,300	+				+1.3
3,165,300	+				+2.1
3,165,342	+		CCNA_03012	0.15	+2.1
3,165,382	+		CCNA_03012	0.22	+3.7
3,165,424	+		CCNA_03012	0.29	+3.1
3,165,428	+		CCNA_03012	0.30	+1.5
3,165,436	-		CCNA_03012	0.31	+1.5
3,165,469	+		CCNA_03012	0.37	+3.8
3,165,469	+		CCNA_03012	0.37	+3.6
3,165,520	-		CCNA_03012	0.46	+0.5
3,165,625	+		CCNA_03012	0.65	+3.8
3,165,644	+		CCNA_03012	0.68	+3.4
3,165,684	-		CCNA_03012	0.75	+1.0
3,165,692	+		CCNA_03012	0.77	+3.2
3,165,711	+		CCNA_03012	0.80	+3.4
3,165,711	+		CCNA_03012	0.80	+3.2
3,165,711	+		CCNA_03012	0.80	+2.9
3,165,726	+		CCNA_03012	0.83	+3.3
3,165,750	+		CCNA_03012	0.87	+3.2
3,165,797	+				+3.0
3,165,807	+				+3.5
3,165,875	+				+1.0
3,165,879	+				-1.2
3,165,993	-				+0.2
3,166,042	+				+0.3
3,166,049	+				+1.1
3,166,052	+				+1.5
3,166,056	+				-0.3
3,166,064	-				-0.4
3,166,071	-				-0.6
3,166,078	+				+1.1
3,166,078	+				+1.4
3,166,086	-				-0.0
3,166,101	-				+1.2
3,166,179	-		CCNA_03013	0.14	-0.2
3,166,209	+		CCNA_03013	0.15	+0.2
3,166,226	+		CCNA_03013	0.17	+0.1
3,166,320	+		CCNA_03013	0.22	+0.9
3,166,345	+		CCNA_03013	0.24	+0.3
3,166,353	-		CCNA_03013	0.25	+1.0
3,166,353	-		CCNA_03013	0.25	+0.2
3,166,355	+		CCNA_03013	0.25	-0.1
3,166,358	-		CCNA_03013	0.25	+0.7
3,166,399	-		CCNA_03013	0.27	-0.8
3,166,424	+		CCNA_03013	0.29	-2.0
3,166,434	+		CCNA_03013	0.30	-0.4
3,166,434	+		CCNA_03013	0.30	+0.1
3,166,434	+		CCNA_03013	0.30	+0.0
3,166,434	+		CCNA_03013	0.30	-1.6
3,166,434	+		CCNA_03013	0.30	+0.3
3,166,434	+		CCNA_03013	0.30	+0.5
3,166,434	+		CCNA_03013	0.30	+1.3
3,166,434	+		CCNA_03013	0.30	+1.6
3,166,434	+		CCNA_03013	0.30	+1.2
3,166,434	+		CCNA_03013	0.30	+1.1
3,166,434	+		CCNA_03013	0.30	+0.8
3,166,434	+		CCNA_03013	0.30	+1.6
3,166,434	+		CCNA_03013	0.30	-0.2
3,166,442	-		CCNA_03013	0.30	-0.3
3,166,442	-		CCNA_03013	0.30	+0.2
3,166,442	-		CCNA_03013	0.30	+3.6
3,166,448	-		CCNA_03013	0.31	+0.2
3,166,461	+		CCNA_03013	0.31	+0.7
3,166,469	-		CCNA_03013	0.32	-0.3
3,166,483	+		CCNA_03013	0.33	+2.0
3,166,493	-		CCNA_03013	0.33	-0.6
3,166,500	-		CCNA_03013	0.34	-1.0
3,166,530	+		CCNA_03013	0.36	-0.4
3,166,538	-		CCNA_03013	0.36	+1.0
3,166,578	+		CCNA_03013	0.39	-0.3
3,166,595	+		CCNA_03013	0.40	-0.1
3,166,611	-		CCNA_03013	0.41	+1.0
3,166,705	+		CCNA_03013	0.47	-0.0
3,166,796	-		CCNA_03013	0.53	-0.9
3,166,797	+		CCNA_03013	0.53	+0.2
3,166,797	+		CCNA_03013	0.53	+0.4