Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02870

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Benzalkonium Chloride 0.0001 mg/ml
3,019,813	+		CCNA_02867	0.32	-2.4
3,019,813	+		CCNA_02867	0.32	-1.2
3,019,821	-		CCNA_02867	0.34	+0.8
3,019,821	-		CCNA_02867	0.34	-0.7
3,019,840	-		CCNA_02867	0.38	-0.3
3,019,890	+		CCNA_02867	0.48	+0.1
3,019,890	+		CCNA_02867	0.48	-1.6
3,019,898	-		CCNA_02867	0.49	+2.7
3,019,922	+		CCNA_02867	0.54	+0.8
3,019,943	+		CCNA_02867	0.58	+0.7
3,019,943	+		CCNA_02867	0.58	+0.1
3,019,943	+		CCNA_02867	0.58	+0.7
3,019,951	-		CCNA_02867	0.60	+1.7
3,019,962	+		CCNA_02867	0.62	+0.3
3,019,966	-		CCNA_02867	0.63	+0.5
3,020,000	+		CCNA_02867	0.69	+0.3
3,020,000	+		CCNA_02867	0.69	-0.7
3,020,008	-		CCNA_02867	0.71	-0.4
3,020,009	-		CCNA_02867	0.71	-0.8
3,020,015	-		CCNA_02867	0.72	+0.5
3,020,041	-		CCNA_02867	0.77	+0.9
3,020,041	-		CCNA_02867	0.77	+0.5
3,020,085	-		CCNA_02867	0.86	-0.9
3,020,085	-		CCNA_02867	0.86	-0.5
3,020,085	-		CCNA_02867	0.86	-2.2
3,020,085	-		CCNA_02867	0.86	-1.3
3,020,087	+		CCNA_02867	0.86	+2.1
3,020,087	+		CCNA_02867	0.86	+3.2
3,020,087	+		CCNA_02867	0.86	+0.3
3,020,087	+		CCNA_02867	0.86	-2.3
3,020,087	+		CCNA_02867	0.86	-0.3
3,020,087	+		CCNA_02867	0.86	+0.7
3,020,087	+		CCNA_02867	0.86	+1.3
3,020,095	-		CCNA_02867	0.88	-0.2
3,020,095	-		CCNA_02867	0.88	+1.7
3,020,095	-		CCNA_02867	0.88	+1.1
3,020,095	-		CCNA_02867	0.88	-1.0
3,020,095	-		CCNA_02867	0.88	+1.3
3,020,095	-		CCNA_02867	0.88	-0.2
3,020,095	-		CCNA_02867	0.88	-0.0
3,020,177	-		CCNA_02868	0.14	-0.3
3,020,182	-		CCNA_02868	0.17	-1.2
3,020,190	+		CCNA_02868	0.21	+0.3
3,020,194	+		CCNA_02868	0.23	+0.1
3,020,209	+		CCNA_02868	0.32	-0.8
3,020,217	-		CCNA_02868	0.36	+0.7
3,020,217	-		CCNA_02868	0.36	+0.3
3,020,267	+		CCNA_02868	0.64	+0.3
3,020,275	-		CCNA_02868	0.68	-1.6
3,020,416	+		CCNA_02869	0.31	+1.2
3,020,416	+		CCNA_02869	0.31	-0.0
3,020,424	-		CCNA_02869	0.34	+0.3
3,020,424	-		CCNA_02869	0.34	-0.1
3,020,424	-		CCNA_02869	0.34	+0.4
3,020,455	+		CCNA_02869	0.45	-0.6
3,020,455	+		CCNA_02869	0.45	-0.7
3,020,458	-		CCNA_02869	0.46	-0.6
3,020,460	+		CCNA_02869	0.46	-1.2
3,020,510	-		CCNA_02869	0.64	-0.8
3,020,510	-		CCNA_02869	0.64	-0.0
3,020,515	-		CCNA_02869	0.66	+0.4
3,020,545	-		CCNA_02869	0.76	-0.3
3,020,550	+		CCNA_02869	0.78	-1.2
3,020,570	+		CCNA_02869	0.85	+0.9
3,020,570	+		CCNA_02869	0.85	+0.4
3,020,578	-		CCNA_02869	0.88	-0.2
3,020,596	+				+1.1
3,020,604	-				-0.5
3,020,608	+				-0.7
3,020,610	+				-0.3
3,020,618	+				-2.8
3,020,664	+				+0.4
3,020,677	-				-2.6
3,020,784	-				-0.8
3,020,831	+		CCNA_02870	0.15	+0.1
3,020,874	+		CCNA_02870	0.25	+0.7
3,020,882	-		CCNA_02870	0.27	-1.5
3,020,890	+		CCNA_02870	0.29	+0.5
3,020,890	+		CCNA_02870	0.29	+1.1
3,020,980	-		CCNA_02870	0.51	-0.7
3,021,000	+		CCNA_02870	0.56	-0.3
3,021,000	+		CCNA_02870	0.56	-1.3
3,021,002	-		CCNA_02870	0.56	-1.7
3,021,020	-		CCNA_02870	0.60	+1.1
3,021,037	+				+0.1
3,021,057	+		CCNA_02870	0.69	+0.1
3,021,062	+		CCNA_02870	0.71	+0.1
3,021,070	-		CCNA_02870	0.72	+2.7
3,021,077	-		CCNA_02870	0.74	-0.5
3,021,077	-		CCNA_02870	0.74	+0.7
3,021,090	-		CCNA_02870	0.77	-0.2
3,021,111	-				+2.7
3,021,205	-				-0.2
3,021,205	-				+1.1
3,021,205	-				+0.3
3,021,277	-		CCNA_02871	0.19	+0.3
3,021,292	+		CCNA_02871	0.23	+1.9
3,021,318	-		CCNA_02871	0.30	-0.7
3,021,332	+		CCNA_02871	0.33	+1.0
3,021,332	+		CCNA_02871	0.33	+1.7
3,021,340	-		CCNA_02871	0.35	+0.7
3,021,359	-		CCNA_02871	0.40	+2.7
3,021,359	-		CCNA_02871	0.40	-0.3
3,021,373	+		CCNA_02871	0.43	+1.1
3,021,373	+		CCNA_02871	0.43	-0.3
3,021,381	-		CCNA_02871	0.45	-0.2
3,021,401	+		CCNA_02871	0.50	-0.9
3,021,404	-		CCNA_02871	0.51	-0.8
3,021,409	-		CCNA_02871	0.52	-0.9
3,021,467	+		CCNA_02871	0.67	-0.2
3,021,485	-		CCNA_02871	0.71	+1.7
3,021,552	+		CCNA_02871	0.88	-0.8
3,021,560	-				+0.8
3,021,573	+				-1.0
3,021,635	+		CCNA_03882	0.14	-0.5
3,021,742	+		CCNA_03882	0.52	+1.7
3,021,750	-		CCNA_03882	0.55	-0.8
3,021,750	-		CCNA_03882	0.55	+0.7
3,021,790	+		CCNA_03882	0.69	-1.3
3,021,807	-		CCNA_03882	0.75	-0.3
3,021,847	+		CCNA_03882	0.89	-0.3
3,021,858	+				+0.3
3,021,858	+				-0.5
3,021,858	+				+0.5
3,021,865	+				+0.3
3,021,872	+				+0.1
3,021,873	-				-1.7
3,021,944	+				+0.3
3,021,957	-				+1.1
3,021,993	+				-0.7
3,022,019	-				-0.5
3,022,032	+				+1.1
3,022,041	+				-0.7
3,022,058	+				+0.8
3,022,066	-				-0.5
3,022,086	+				-0.3
3,022,089	+				-0.2
3,022,089	+				+0.7
3,022,089	+				+1.1
3,022,089	-				+1.2
3,022,097	-				-1.5
3,022,097	-				-0.3
3,022,097	-				+1.2
3,022,097	-				-1.0
3,022,162	+		CCNA_02872	0.12	-2.6
3,022,162	+		CCNA_02872	0.12	+0.7