Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02629 and CCNA_02630 overlap by 2 nucleotides CCNA_02630 and CCNA_02631 are separated by 69 nucleotides CCNA_02631 and CCNA_02632 are separated by 349 nucleotides
CCNA_02629: CCNA_02629 - UDP-N-acetylmuramate--alanine ligase, at 2,779,586 to 2,781,007
_02629
CCNA_02630: CCNA_02630 - hypothetical protein, at 2,781,006 to 2,781,527
_02630
CCNA_02631: CCNA_02631 - P-loop NTPase-related protein, at 2,781,597 to 2,781,770
_02631
CCNA_02632: CCNA_02632 - SOUL domain heme-binding protein, at 2,782,120 to 2,782,746
_02632
Position (kb)
2781
2782 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2781.021 kb on + strand at 2781.072 kb on + strand, within CCNA_02630 at 2781.080 kb on - strand, within CCNA_02630 at 2781.091 kb on - strand, within CCNA_02630 at 2781.118 kb on + strand, within CCNA_02630 at 2781.126 kb on - strand, within CCNA_02630 at 2781.126 kb on - strand, within CCNA_02630 at 2781.183 kb on - strand, within CCNA_02630 at 2781.183 kb on - strand, within CCNA_02630 at 2781.196 kb on + strand, within CCNA_02630 at 2781.204 kb on - strand, within CCNA_02630 at 2781.252 kb on - strand, within CCNA_02630 at 2781.254 kb on + strand, within CCNA_02630 at 2781.287 kb on - strand, within CCNA_02630 at 2781.315 kb on + strand, within CCNA_02630 at 2781.433 kb on + strand, within CCNA_02630 at 2781.529 kb on - strand at 2781.529 kb on - strand at 2781.529 kb on - strand at 2781.529 kb on - strand at 2781.613 kb on + strand at 2781.623 kb on + strand, within CCNA_02631 at 2781.640 kb on - strand, within CCNA_02631 at 2781.724 kb on + strand, within CCNA_02631 at 2781.732 kb on - strand, within CCNA_02631 at 2781.733 kb on + strand, within CCNA_02631 at 2781.751 kb on + strand, within CCNA_02631 at 2781.841 kb on - strand at 2781.854 kb on - strand at 2781.865 kb on - strand at 2781.884 kb on - strand at 2781.922 kb on + strand at 2781.930 kb on + strand at 2781.961 kb on + strand at 2781.979 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.037 kb on + strand at 2782.040 kb on - strand at 2782.060 kb on + strand at 2782.060 kb on + strand at 2782.068 kb on - strand at 2782.070 kb on + strand at 2782.078 kb on - strand at 2782.078 kb on - strand at 2782.080 kb on + strand at 2782.083 kb on - strand at 2782.083 kb on - strand at 2782.088 kb on - strand at 2782.111 kb on + strand at 2782.125 kb on - strand at 2782.130 kb on - strand at 2782.137 kb on - strand at 2782.152 kb on - strand at 2782.181 kb on + strand at 2782.209 kb on - strand, within CCNA_02632 at 2782.216 kb on + strand, within CCNA_02632 at 2782.216 kb on - strand, within CCNA_02632 at 2782.224 kb on + strand, within CCNA_02632 at 2782.235 kb on + strand, within CCNA_02632 at 2782.235 kb on + strand, within CCNA_02632 at 2782.235 kb on + strand, within CCNA_02632 at 2782.243 kb on - strand, within CCNA_02632 at 2782.243 kb on - strand, within CCNA_02632 at 2782.243 kb on - strand, within CCNA_02632 at 2782.253 kb on + strand, within CCNA_02632 at 2782.276 kb on - strand, within CCNA_02632 at 2782.360 kb on + strand, within CCNA_02632 at 2782.368 kb on - strand, within CCNA_02632 at 2782.368 kb on - strand, within CCNA_02632 at 2782.371 kb on + strand, within CCNA_02632 at 2782.405 kb on + strand, within CCNA_02632 at 2782.410 kb on + strand, within CCNA_02632 at 2782.413 kb on - strand, within CCNA_02632 at 2782.413 kb on - strand, within CCNA_02632 at 2782.442 kb on - strand, within CCNA_02632 at 2782.448 kb on + strand, within CCNA_02632 at 2782.461 kb on - strand, within CCNA_02632 at 2782.470 kb on + strand, within CCNA_02632 at 2782.470 kb on - strand, within CCNA_02632 at 2782.470 kb on - strand, within CCNA_02632 at 2782.493 kb on + strand, within CCNA_02632 at 2782.505 kb on + strand, within CCNA_02632 at 2782.510 kb on - strand, within CCNA_02632
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 2,781,021 + -0.3 2,781,072 + CCNA_02630 0.13 +3.5 2,781,080 - CCNA_02630 0.14 +2.5 2,781,091 - CCNA_02630 0.16 -1.4 2,781,118 + CCNA_02630 0.21 +0.7 2,781,126 - CCNA_02630 0.23 +0.5 2,781,126 - CCNA_02630 0.23 -2.8 2,781,183 - CCNA_02630 0.34 -0.7 2,781,183 - CCNA_02630 0.34 -1.4 2,781,196 + CCNA_02630 0.36 -0.0 2,781,204 - CCNA_02630 0.38 -0.3 2,781,252 - CCNA_02630 0.47 -1.0 2,781,254 + CCNA_02630 0.48 -0.7 2,781,287 - CCNA_02630 0.54 -2.8 2,781,315 + CCNA_02630 0.59 -0.5 2,781,433 + CCNA_02630 0.82 +0.7 2,781,529 - +0.9 2,781,529 - +2.5 2,781,529 - +2.5 2,781,529 - -1.3 2,781,613 + -0.3 2,781,623 + CCNA_02631 0.15 +0.9 2,781,640 - CCNA_02631 0.25 -1.3 2,781,724 + CCNA_02631 0.73 +0.1 2,781,732 - CCNA_02631 0.78 -0.7 2,781,733 + CCNA_02631 0.78 -0.5 2,781,751 + CCNA_02631 0.89 +1.5 2,781,841 - +1.5 2,781,854 - +0.1 2,781,865 - -1.4 2,781,884 - -1.7 2,781,922 + -0.5 2,781,930 + -0.5 2,781,961 + -0.1 2,781,979 + -1.3 2,781,996 + -0.7 2,781,996 + +0.5 2,781,996 + +0.1 2,781,996 + +1.5 2,781,996 + -1.7 2,781,996 + -1.5 2,782,004 - -1.1 2,782,004 - -0.5 2,782,004 - +2.5 2,782,004 - +0.4 2,782,004 - -0.4 2,782,004 - -1.2 2,782,004 - +0.5 2,782,037 + +0.0 2,782,040 - -1.1 2,782,060 + +1.5 2,782,060 + +1.5 2,782,068 - -2.3 2,782,070 + -0.7 2,782,078 - +0.1 2,782,078 - +0.5 2,782,080 + -0.5 2,782,083 - +0.7 2,782,083 - -2.1 2,782,088 - +0.5 2,782,111 + -0.3 2,782,125 - +1.5 2,782,130 - +0.1 2,782,137 - +0.5 2,782,152 - -0.9 2,782,181 + -0.1 2,782,209 - CCNA_02632 0.14 -1.4 2,782,216 + CCNA_02632 0.15 -1.2 2,782,216 - CCNA_02632 0.15 -0.3 2,782,224 + CCNA_02632 0.17 +1.5 2,782,235 + CCNA_02632 0.18 +0.1 2,782,235 + CCNA_02632 0.18 -0.1 2,782,235 + CCNA_02632 0.18 -0.7 2,782,243 - CCNA_02632 0.20 +2.5 2,782,243 - CCNA_02632 0.20 +0.9 2,782,243 - CCNA_02632 0.20 -0.7 2,782,253 + CCNA_02632 0.21 -0.4 2,782,276 - CCNA_02632 0.25 -0.3 2,782,360 + CCNA_02632 0.38 +0.9 2,782,368 - CCNA_02632 0.40 -0.1 2,782,368 - CCNA_02632 0.40 -1.9 2,782,371 + CCNA_02632 0.40 -0.1 2,782,405 + CCNA_02632 0.45 -0.9 2,782,410 + CCNA_02632 0.46 +0.1 2,782,413 - CCNA_02632 0.47 -1.1 2,782,413 - CCNA_02632 0.47 -0.9 2,782,442 - CCNA_02632 0.51 -0.2 2,782,448 + CCNA_02632 0.52 -1.0 2,782,461 - CCNA_02632 0.54 +0.5 2,782,470 + CCNA_02632 0.56 -0.1 2,782,470 - CCNA_02632 0.56 -1.8 2,782,470 - CCNA_02632 0.56 -0.1 2,782,493 + CCNA_02632 0.59 +0.5 2,782,505 + CCNA_02632 0.61 +0.9 2,782,510 - CCNA_02632 0.62 +0.2
Or see this region's nucleotide sequence